View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9169_low_15 (Length: 446)
Name: NF9169_low_15
Description: NF9169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9169_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Complemental strand, 53614882 - 53614456
Alignment:
| Q |
1 |
ttatacataaaggactaaaattataagttttttaaagttaaaggagaaaaaatgcattatagcctaaaatttattgaatccgtgttgtctacttgtgggg |
100 |
Q |
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| T |
53614882 |
ttatatatagaggactaaaattgtaagtttttgaaagttaagggaggaaaaatgcactttagcctaaaatttattgaatcagtgttgtctacttctgggg |
53614783 |
T |
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| Q |
101 |
ttttacttggtagtattattaattaacaagacagccaaatgaagttgagaccgctttggttctttgactatttttggcttaggagtgggttagatgatgt |
200 |
Q |
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| T |
53614782 |
ttttacttgatagtatta---attaacaagacaaccaaatga-gttgagaccgctttggttctttgactatttttggcttaggagtgggttagatgatgt |
53614687 |
T |
|
| Q |
201 |
cgactgtggaattgtgctaccctactaattactgaagagcctccatccttcacatgttcatacgcaacatggtcattcaatgaacctccatccaaatcca |
300 |
Q |
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| T |
53614686 |
cgactgtggaattgtgctaccctactaattactaaagagcctccatccttcacatgttcatacgcaacatggtcattcaatgaacctccatccaaatcca |
53614587 |
T |
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| Q |
301 |
atgaatcatctcttgaccgggtgttgtagggaaacaagtagctctaaagacgggtagatttacaggagaaacaagtagcaactgttgtaggtaggtagga |
400 |
Q |
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| T |
53614586 |
atgaatcatctcttgaccgggtgttgtagggaaacaagtagctctaaagacgggtagatttacaggagaaacaagtagcaactgttgtaggtaggtagga |
53614487 |
T |
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| Q |
401 |
cgtaaatatataattttggtcattaattttt |
431 |
Q |
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| T |
53614486 |
cgtaaatatataattttggtcattaattttt |
53614456 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 40
Target Start/End: Original strand, 2412970 - 2412998
Alignment:
| Q |
12 |
ggactaaaattataagttttttaaagtta |
40 |
Q |
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| T |
2412970 |
ggactaaaattataagttttttaaagtta |
2412998 |
T |
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