View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9169_low_16 (Length: 442)
Name: NF9169_low_16
Description: NF9169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9169_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 44016492 - 44016125
Alignment:
| Q |
1 |
acaatccaattaaaattcagcgtgacataataaattcagttatatgaatttgatttgttttttgaatctcactctacaggtggaaccgtggagcaatttc |
100 |
Q |
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| T |
44016492 |
acaatccaattaaaattcagcgtgacataataaattcagttatatgaatttgatttgttttttgaatctcactctacaggtggaaccgtggagcaatttc |
44016393 |
T |
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| Q |
101 |
aaagcaataatcatcaaggatcacttgtaacatatgatcaaaacaactattttggtgatactctcgagactggcaactatgtatcaaacaataataatgg |
200 |
Q |
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| T |
44016392 |
aaagcaataatcatcaaggatcacttataacatatgatcaaaacaactattttggtgatactctcgagactggcaactatgtatcaaacaataataatgg |
44016293 |
T |
|
| Q |
201 |
acaaataggttgcatcgaggggccaccatttcccacatcaccattcatgaatgagatcataccttatagcttcttagattcacaatcagacggtggtggt |
300 |
Q |
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| T |
44016292 |
acaaataggttgcatcgaggggccaccatttcccacatcaccattcatgaatgagatcataccttatagcttcttagattcacaatcagacggtggtggt |
44016193 |
T |
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| Q |
301 |
acaatgccttcaagttcaggaccaatcattgacggagcttcaaggtggcattaacaaaatttgtaatt |
368 |
Q |
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| T |
44016192 |
acaatgccttcaagttcaggaccaatcattgatggagcttcaaggtggcattaacaaaatttgtaatt |
44016125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 75 - 298
Target Start/End: Original strand, 44030195 - 44030418
Alignment:
| Q |
75 |
tacaggtggaaccgtggagcaatttcaaagcaataatcatcaaggatcacttgtaacatatgatcaaaacaactattttggtgata---ctctcgagact |
171 |
Q |
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| T |
44030195 |
tacaggtgaaaccatggagcaatttccaaacaataatcatcaagaaccagttataacatatgatcaaaacaactattttggtgataaatctctagagaat |
44030294 |
T |
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| Q |
172 |
ggcaactatgtatcaaacaataataatggacaaataggttgcatcgaggggccaccatttcccacatcaccattcatgaatgagatcataccttatagct |
271 |
Q |
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| T |
44030295 |
ggcaactatgtagcaaacaataataatgcacaaataggttgcaccgattggtcatcatttcccacatcaccattcatgaatg---gcatgccttacagct |
44030391 |
T |
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| Q |
272 |
tcttagattcacaatcagacggtggtg |
298 |
Q |
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| T |
44030392 |
tcccagattcacaatcagacggtggtg |
44030418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 364 - 433
Target Start/End: Original strand, 44033493 - 44033562
Alignment:
| Q |
364 |
taattgggagaacttatctattaacatacatatttgtatggaagaacttatgcaaattactgatgtccat |
433 |
Q |
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| T |
44033493 |
taattgggagaacttatctattaacatacatatttgtatggaagaacttatgcaaattacttatgtccat |
44033562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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