View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9169_low_19 (Length: 430)
Name: NF9169_low_19
Description: NF9169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9169_low_19 |
 | |
|
| [»] scaffold0108 (1 HSPs) |
| | |
|
| [»] scaffold0064 (1 HSPs) |
| | |
|
| [»] scaffold0051 (1 HSPs) |
| | |
|
| [»] scaffold0040 (1 HSPs) |
| | |
|
| [»] scaffold0897 (1 HSPs) |
| | |
|
| [»] scaffold0304 (2 HSPs) |
| | |
|
| [»] scaffold0319 (2 HSPs) |
| | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
| [»] scaffold0282 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 14 - 422
Target Start/End: Original strand, 10787017 - 10787425
Alignment:
| Q |
14 |
tggacatcatattgctcgtcctcagcagggtgatagcctcgatagttacgtctcaatccatccccgtaacagttatgccagttgttgcagaatcgacggc |
113 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||| || || |||||||||| |
|
|
| T |
10787017 |
tggagatcatattgctcgtcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggc |
10787116 |
T |
|
| Q |
114 |
gaaccagtcgagggggcagtaatctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaacgtttat |
213 |
Q |
| |
|
|||||| |||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
10787117 |
gaaccaactgaggaggcagtaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttt |
10787216 |
T |
|
| Q |
214 |
tgtctccaaaagagaccagaaatcatgaaaaagtgtagcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcaca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10787217 |
tgtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcaca |
10787316 |
T |
|
| Q |
314 |
gagccaacatccatagcattcttcaacaaaccttggacagtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgcagaatatgt |
413 |
Q |
| |
|
|||||| | ||||||||||||| |||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||| | ||||||||| |||| |
|
|
| T |
10787317 |
gagccagcgtccatagcattctgcaacaagccttggacggtaggaatgcagggctcagggtctagcatgaactgggtacacctcagaatgcagaacatgt |
10787416 |
T |
|
| Q |
414 |
gatgtccat |
422 |
Q |
| |
|
||||||||| |
|
|
| T |
10787417 |
gatgtccat |
10787425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 14 - 422
Target Start/End: Complemental strand, 14688776 - 14688368
Alignment:
| Q |
14 |
tggacatcatattgctcgtcctcagcagggtgatagcctcgatagttacgtctcaatccatccccgtaacagttatgccagttgttgcagaatcgacggc |
113 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||| | |
|
|
| T |
14688776 |
tggagatcatattgctcatcctcagcagggtgatagcctcgatagttgcgtctcaatccatccccgcgccagttgtgccagttgttgcagaatcgacgac |
14688677 |
T |
|
| Q |
114 |
gaaccagtcgagggggcagtaatctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaacgtttat |
213 |
Q |
| |
|
| |||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||| | |
|
|
| T |
14688676 |
ggaccaaccgaggaggcagtaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcccgttatatctctgcgatagcgcgcgacgtttct |
14688577 |
T |
|
| Q |
214 |
tgtctccaaaagagaccagaaatcatgaaaaagtgtagcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcaca |
313 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| || ||| ||||||||||||||||||||| || ||||| ||||||||||||||| |
|
|
| T |
14688576 |
tgtctccaaaagagaccaaaaatcatgaaaaagtgtagcggtatcaggtgtgataccgtcaagcgccctcagcagcacgtcgaaatacagggcggtcaca |
14688477 |
T |
|
| Q |
314 |
gagccaacatccatagcattcttcaacaaaccttggacagtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgcagaatatgt |
413 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||| |
|
|
| T |
14688476 |
gagccagcatccatggcattcttcaacaaaccttggatggtagggatgcagggctcagggtccagcatgaactgggtgcacctcaaaatgcagaacatgt |
14688377 |
T |
|
| Q |
414 |
gatgtccat |
422 |
Q |
| |
|
||||||||| |
|
|
| T |
14688376 |
gatgtccat |
14688368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 14 - 422
Target Start/End: Complemental strand, 7360778 - 7360370
Alignment:
| Q |
14 |
tggacatcatattgctcgtcctcagcagggtgatagcctcgatagttacgtctcaatccatccccgtaacagttatgccagttgttgcagaatcgacggc |
113 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||| | |
|
|
| T |
7360778 |
tggagatcatattgctcatcctcagcagggtgatagcctcgatagttacgtctcaatacatccccgcgacagttgtgccagttgttgcagaatcgacgac |
7360679 |
T |
|
| Q |
114 |
gaaccagtcgagggggcagtaatctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaacgtttat |
213 |
Q |
| |
|
| | || ||||| ||||||||||| || |||||||||||||| || |||||| ||||||| |||||||||| ||||| ||||| ||||| |||||| |
|
|
| T |
7360678 |
ggatcaaccgaggaggcagtaatcttttataccagcctgaaacgaaacggaaagaggtgtccacgcctgttatgtctctacgatagcgcgcgacgtttcg |
7360579 |
T |
|
| Q |
214 |
tgtctccaaaagagaccagaaatcatgaaaaagtgtagcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcaca |
313 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||| |||| || |||||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
7360578 |
tgtctccaaaagagacaagaaatcatgaaaaagtgcagcggcatcaggtgtgacaccgtcaagcgccctcagcagtacgtcgaagtacagagcggtcaca |
7360479 |
T |
|
| Q |
314 |
gagccaacatccatagcattcttcaacaaaccttggacagtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgcagaatatgt |
413 |
Q |
| |
|
|||||| ||||||| ||||||||||| |||||||||| ||||| | |||||||||||| ||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
7360478 |
gagccagcatccatggcattcttcaagaaaccttggatggtagggacgcagggctcaggatccagcatgaactgggtacacctcaaaatgcagaacatgt |
7360379 |
T |
|
| Q |
414 |
gatgtccat |
422 |
Q |
| |
|
| ||||||| |
|
|
| T |
7360378 |
ggtgtccat |
7360370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 125 - 370
Target Start/End: Original strand, 10157909 - 10158154
Alignment:
| Q |
125 |
gggggcagtaatctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaacgtttattgtctccaaaa |
224 |
Q |
| |
|
|||||||| || || ||||||||||||||||| ||||| || ||| |||||| || |||||||| ||||||||||||||||| || | |||||||||| |
|
|
| T |
10157909 |
gggggcagcaaccttttgtaccagcctgaaacgaagcgaaagtgggagtcccctcccgttatctccctgcgataacgcgcaacattcttcgtctccaaaa |
10158008 |
T |
|
| Q |
225 |
gagaccagaaatcatgaaaaagtgtagcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatc |
324 |
Q |
| |
|
||||||| || |||| |||||| || ||||| | || ||||||||||||||||| || |||||| ||||| || ||| |||| |||||| |||| |
|
|
| T |
10158009 |
gagaccaaaagtcattgaaaagttcagttatatcaggagagataccgtcaagcgccctcaacattacatcaaagtaaagcgcgctcacggagccatcatc |
10158108 |
T |
|
| Q |
325 |
catagcattcttcaacaaaccttggacagtaggaatgcagggctca |
370 |
Q |
| |
|
|||||||||||| | | || | ||||||||||||||| |||||| |
|
|
| T |
10158109 |
catagcattcttgagcgaatacttgacagtaggaatgcatggctca |
10158154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 14 - 422
Target Start/End: Original strand, 1729835 - 1730243
Alignment:
| Q |
14 |
tggacatcatattgctcgtcctcagcagggtgatagcctcgatagttacgtctcaatccatccccgtaacagttatgccagttgttgcagaatcgacggc |
113 |
Q |
| |
|
|||| |||||||||||||||||||||| || |||| ||||||||||| ||||||||||||||||||| |||||| |||||||| ||||| |||||||||| |
|
|
| T |
1729835 |
tggagatcatattgctcgtcctcagcaaggcgataacctcgatagttgcgtctcaatccatccccgtgacagttgtgccagttattgcaaaatcgacggc |
1729934 |
T |
|
| Q |
114 |
gaaccagtcgagggggcagtaatctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaacgtttat |
213 |
Q |
| |
|
| |||| |||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||| | |
|
|
| T |
1729935 |
ggaccaactgaggaggcagtaatctcttataccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcgacgtttct |
1730034 |
T |
|
| Q |
214 |
tgtctccaaaagagaccagaaatcatgaaaaagtgtagcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcaca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1730035 |
tgtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacatcgttaagcaccctcagcagtacatcgaagtacagggcggtcaca |
1730134 |
T |
|
| Q |
314 |
gagccaacatccatagcattcttcaacaaaccttggacagtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgcagaatatgt |
413 |
Q |
| |
|
|||||| | |||||||||||||||| |||||||||||| |||||||| ||||||||||||| |||||||||||| |||||||| ||||||||||| || | |
|
|
| T |
1730135 |
gagccagcgtccatagcattcttcagcaaaccttggacggtaggaatacagggctcagggtacagcatgaactgagtacacctcaaaatgcagaacatat |
1730234 |
T |
|
| Q |
414 |
gatgtccat |
422 |
Q |
| |
|
||||||||| |
|
|
| T |
1730235 |
gatgtccat |
1730243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 334
Target Start/End: Complemental strand, 22338649 - 22338584
Alignment:
| Q |
269 |
ccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattc |
334 |
Q |
| |
|
||||| || |||||||||| ||||| ||||| || ||| ||||||||||| |||||||||||||| |
|
|
| T |
22338649 |
ccgtcgagtgccctcagcatgacatcaaagtagagcgcgctcacagagccagcatccatagcattc |
22338584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 14 - 422
Target Start/End: Complemental strand, 14329307 - 14328899
Alignment:
| Q |
14 |
tggacatcatattgctcgtcctcagcagggtgatagcctcgatagttacgtctcaatccatccccgtaacagttatgccagttgttgcagaatcgacggc |
113 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||| | |
|
|
| T |
14329307 |
tggagatcatattgctcatcctcagcagggtgatagcctcgatagttgcgtctcaatccatccccgcgacagttgtgccagttgttgcagaatcgacgac |
14329208 |
T |
|
| Q |
114 |
gaaccagtcgagggggcagtaatctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaacgtttat |
213 |
Q |
| |
|
|| || ||||| ||||||||||| || |||||||||||||| |||||||||||||||||| | || ||||| ||||||||||| ||||| |||||| |
|
|
| T |
14329207 |
aaatcaaccgaggaggcagtaatcttttataccagcctgaaacgaagcggaaacgggtgtccacacccgttatgtctctgcgatagcgcgcgacgtttcg |
14329108 |
T |
|
| Q |
214 |
tgtctccaaaagagaccagaaatcatgaaaaagtgtagcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcaca |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| || ||| |||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
14329107 |
tgtctccaaaagagaccagaaatcatgaaaaagtgtagcggcatcaggtgtgataccgtcaagcgccctcagcagtacgtcgaagtacagagcggtcaca |
14329008 |
T |
|
| Q |
314 |
gagccaacatccatagcattcttcaacaaaccttggacagtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgcagaatatgt |
413 |
Q |
| |
|
|||||| ||||||| |||||||||| |||||||| || ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
14329007 |
gagccagcatccatggcattcttcagcaaaccttagatggtagggatgcagggctcagggtccagcatgaactgggtacacctcaaaatgcagaacatgt |
14328908 |
T |
|
| Q |
414 |
gatgtccat |
422 |
Q |
| |
|
||||||||| |
|
|
| T |
14328907 |
gatgtccat |
14328899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 35 - 405
Target Start/End: Complemental strand, 18166922 - 18166551
Alignment:
| Q |
35 |
tcagcagggtgatagcctcgatagttacgtctcaatccatccccgtaacagttatgccagttgttgcagaatcgacggcgaaccagtcgagggggcagta |
134 |
Q |
| |
|
|||||||| ||| | |||||||||||||| || | |||||| || ||| || ||||||||||||||||||||||| | || | | || ||||| | |
|
|
| T |
18166922 |
tcagcaggatgaaaccctcgatagttacgccttagtccatctccacgacaattgtgccagttgttgcagaatcgacgacaaattaactggggaggcagca |
18166823 |
T |
|
| Q |
135 |
atctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaacgtttatt-gtctccaaaagagaccaga |
233 |
Q |
| |
|
| | ||||||||||||||| || ||||||||| ||| |||||| ||||||||||| ||||||||||||||||| ||| || ||||||||||||||||| | |
|
|
| T |
18166822 |
accgcttgtaccagcctgagacgaagcggaaatgggagtcccctcctgttatctccctgcgataacgcgcaacatttttttgtctccaaaagagaccaaa |
18166723 |
T |
|
| Q |
234 |
aatcatgaaaaagtgtagcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcatt |
333 |
Q |
| |
|
| |||| || ||| |||||||||| | ||| |||||||||||| ||||||| |||||| ||||| || ||||||||||| ||| |||||||||| || |
|
|
| T |
18166722 |
agtcattgaagagttcagcggtatcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatagcgtt |
18166623 |
T |
|
| Q |
334 |
cttcaacaaaccttggacagtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgca |
405 |
Q |
| |
|
| | | ||||| | ||| ||||||||||| |||||| ||||||||||| || || || || |||||||| |
|
|
| T |
18166622 |
cctaagcaaacgcttgacggtaggaatgcatggctcaacatccagcatgaattgagtgcatctcaaaatgca |
18166551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 422
Target Start/End: Original strand, 24954578 - 24954977
Alignment:
| Q |
14 |
tggacatcatattgctcgtcctcagcagggtgatagcctcgatagttacgtctcaatccatccccgtaacagttatgccagttgttgcagaatcgacggc |
113 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||| | |
|
|
| T |
24954578 |
tggagatcatattgcttatcctcagcagggtgatagcctcgatagttgcgtctcaatccatccccgcgacagt---------tgttgcagaatcgacgac |
24954668 |
T |
|
| Q |
114 |
gaaccagtcgagggggcagtaatctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaacgtttat |
213 |
Q |
| |
|
| | || |||||| ||||||||||| || |||||||||||||| |||||||||| ||||||| |||||||||| |||| ||||| ||||| |||||| |
|
|
| T |
24954669 |
ggatcaatcgaggaggcagtaatcttttataccagcctgaaacgaagcggaaacaggtgtccacgcctgttatgtctcgacgatatcgcgcgacgtttcg |
24954768 |
T |
|
| Q |
214 |
tgtctccaaaagagaccagaaatcatgaaaaagtgtagcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcaca |
313 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||| || ||| |||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
24954769 |
tgtctccagaagagaccagaaatcatgaaaaagtgtagcggcatcaggtgtgataccgtcaagcgccctcagcagtacgtcgaagtacagagcggtcaca |
24954868 |
T |
|
| Q |
314 |
gagccaacatccatagcattcttcaacaaaccttggacagtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgcagaatatgt |
413 |
Q |
| |
|
|||||| ||||||| |||||||||| ||| ||||||| ||||| ||||| ||||||||||||| |||||||||||||||||| ||||||||||| |||| |
|
|
| T |
24954869 |
gagccagcatccatggcattcttcagcaagccttggatggtagggatgcaaggctcagggtccaacatgaactgggtacacctcaaaatgcagaacatgt |
24954968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 35 - 370
Target Start/End: Complemental strand, 23621749 - 23621413
Alignment:
| Q |
35 |
tcagcagggtgatagcctcgatagttacgtctcaatccatccccgtaacagttatgccagttgttgcagaatcgacggcgaaccag-tcgagggggcagt |
133 |
Q |
| |
|
|||||||| ||| | ||| ||||||| || || |||||||| || |||||| ||||||||||||||||||||||| |||| | | | |||||||| |
|
|
| T |
23621749 |
tcagcaggatgaaaccctagatagttgcgccttaatccatctccacgacagttgtgccagttgttgcagaatcgacgacgaattaactggggggggcagc |
23621650 |
T |
|
| Q |
134 |
aatctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaacgtttattgtctccaaaagagaccaga |
233 |
Q |
| |
|
|| ||||||||||||| |||||| ||||||||| ||| |||||| ||||||||||| ||||||||||||||||| ||| ||||||||||||||||||| | |
|
|
| T |
23621649 |
aacctcttgtaccagcatgaaacgaagcggaaatgggagtcccctcctgttatctccctgcgataacgcgcaacattttttgtctccaaaagagaccaaa |
23621550 |
T |
|
| Q |
234 |
aatcatgaaaaagtgtagcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcatt |
333 |
Q |
| |
|
| ||| || ||| |||||| ||| | ||| |||||||||||| ||||||| |||||| ||||| || ||||||||||| ||| ||||||||||||| |
|
|
| T |
23621549 |
agtcaatgaagagttcagcggtgtcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatagcatt |
23621450 |
T |
|
| Q |
334 |
cttcaacaaaccttggacagtaggaatgcagggctca |
370 |
Q |
| |
|
| | | ||||| || || ||||||||||| |||||| |
|
|
| T |
23621449 |
cctaagcaaacgtttaacggtaggaatgcatggctca |
23621413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 35 - 405
Target Start/End: Complemental strand, 23196144 - 23195774
Alignment:
| Q |
35 |
tcagcagggtgatagcctcgatagttacgtctcaatccatccccgtaacagttatgccagttgttgcagaatcgacggcgaaccagtcgagggggcagta |
134 |
Q |
| |
|
|||||||| ||| | ||||||||||| || || | |||||| || |||||| ||||||||||||||||||||||| |||| | | | || |||| | |
|
|
| T |
23196144 |
tcagcaggatgaaaccctcgatagttgcgccttagtccatctccacgacagttgtgccagttgttgcagaatcgacgacgaattaattggggaggcaaca |
23196045 |
T |
|
| Q |
135 |
atctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaacgtttattgtctccaaaagagaccagaa |
234 |
Q |
| |
|
| ||||| |||||||||| |||||||||||| ||| |||||| ||| ||||||| ||||||||||||||||| ||| ||||||||||||||||||| || |
|
|
| T |
23196044 |
acctcttaaaccagcctgagacaaagcggaaatgggagtcccctcctattatctccctgcgataacgcgcaacattttttgtctccaaaagagaccaaaa |
23195945 |
T |
|
| Q |
235 |
atcatgaaaaagtgtagcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattc |
334 |
Q |
| |
|
|||| || ||| |||||||||| | ||| |||||||||||| ||||||| |||||| ||||| || ||||||||||| ||| ||||||||| ||| |
|
|
| T |
23195944 |
gtcattgaagagttcagcggtatcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatagtgttc |
23195845 |
T |
|
| Q |
335 |
ttcaacaaaccttggacagtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgca |
405 |
Q |
| |
|
| | ||||| | ||| ||||||||||| |||||| |||||||||||| || || || || |||||||| |
|
|
| T |
23195844 |
ctaagcaaacacttgacggtaggaatgcatggctcaacgtccagcatgaattgagtgcatctcaaaatgca |
23195774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 35 - 405
Target Start/End: Original strand, 22643208 - 22643577
Alignment:
| Q |
35 |
tcagcagggtgatagcctcgatagttacgtctcaatccatccccgtaacagttatgccagttgttgcagaatcgacggcgaaccagtcgagggggcagta |
134 |
Q |
| |
|
|||||||| ||| | ||||||||||| || || | |||||| || |||||| ||| ||||||||||||||||||| |||| | || || || | |
|
|
| T |
22643208 |
tcagcaggatgaaaccctcgatagttgcgccttagtccatctccaagacagttgtgctagttgttgcagaatcgacgacgaattaacttgggaggaagca |
22643307 |
T |
|
| Q |
135 |
atctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaacgtttattgtctccaaaagagaccagaa |
234 |
Q |
| |
|
| ||||||||||||||| | || ||| ||||| ||| ||||| |||||| |||| ||||||||| ||||||| ||| ||||||||||||||||||| || |
|
|
| T |
22643308 |
acctcttgtaccagcctaagacgaagtggaaatgggactcccctcctgttgtctccctgcgataatgcgcaacattttttgtctccaaaagagaccaaaa |
22643407 |
T |
|
| Q |
235 |
atcatgaaaaagtgtagcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattc |
334 |
Q |
| |
|
|||| || ||| ||||||||||| ||| |||||||||||| ||||||| |||||| ||||| || ||||||||||| ||| ||||||| || ||| |
|
|
| T |
22643408 |
gtcattgaagagttcagcggtatcaa-aatgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatggcgttc |
22643506 |
T |
|
| Q |
335 |
ttcaacaaaccttggacagtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgca |
405 |
Q |
| |
|
| | ||||| | |||| |||||||||| |||||| ||||||||||| || || || || |||||||| |
|
|
| T |
22643507 |
ctaagcaaacgcttgacaataggaatgcatggctcaacatccagcatgaattgagtgcatctcaaaatgca |
22643577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 3e-86; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 14 - 422
Target Start/End: Original strand, 22080833 - 22081242
Alignment:
| Q |
14 |
tggacatcatattgctcgtcctcagcagggtgatagcctcgatagttacgtctcaatccatccccgtaacagttatgccagttgttgcagaatcgacggc |
113 |
Q |
| |
|
|||| ||||||||| || || |||||||| ||||| ||||||||||| || ||||||||||||||| |||||| ||||||||||||||||||||||| | |
|
|
| T |
22080833 |
tggagatcatattgttcatcttcagcaggatgataccctcgatagttgcgcctcaatccatccccgcgacagttgtgccagttgttgcagaatcgacgac |
22080932 |
T |
|
| Q |
114 |
gaaccagtcgagggggcagtaatctcttgtaccagcc-tgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaacgttta |
212 |
Q |
| |
|
| | | | || ||||||||||||||||||||||| | | || |||||||||||||| ||||||||||||||||| |||||||| ||||| |||||| |
|
|
| T |
22080933 |
ggattaactggggaggcagtaatctcttgtaccagccattagacgaagcggaaacgggtatccccgcctgttatctccctgcgatagcgcgcgacgtttc |
22081032 |
T |
|
| Q |
213 |
ttgtctccaaaagagaccagaaatcatgaaaaagtgtagcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcac |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||| |||||| || ||| ||| |||||||||||||||||||| |||||||| || |||||||| |
|
|
| T |
22081033 |
ttgtctccaaaagagaccagaaatcatgaaagagttcagcagtatcaggtgtgataccatcaagcgccctcagcagtacgtcgaagtagagagcggtcac |
22081132 |
T |
|
| Q |
313 |
agagccaacatccatagcattcttcaacaaaccttggacagtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgcagaatatg |
412 |
Q |
| |
|
||| ||| ||||||| || ||||| | ||||||| ||| ||||||||||| |||||| |||| ||| || |||||||| || |||||||| || || |
|
|
| T |
22081133 |
agaaccagcatccatggcgttcttaagaaaacctttgacggtaggaatgcatggctcaatatccaacataaattgggtacatctcaaaatgcaaaacata |
22081232 |
T |
|
| Q |
413 |
tgatgtccat |
422 |
Q |
| |
|
|||||||||| |
|
|
| T |
22081233 |
tgatgtccat |
22081242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 236 - 422
Target Start/End: Complemental strand, 41375532 - 41375346
Alignment:
| Q |
236 |
tcatgaaaaagtgtagcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattct |
335 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
41375532 |
tcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccagcgtccatagcattct |
41375433 |
T |
|
| Q |
336 |
tcaacaaaccttggacagtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgcagaatatgtgatgtccat |
422 |
Q |
| |
|
||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||| |
|
|
| T |
41375432 |
tcagcaagccttggacggtaggaatgcagggctcagggtccagcatgaactgggtacacctcaaaatgcagaacatatgatgtccat |
41375346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 41375729 - 41375532
Alignment:
| Q |
14 |
tggacatcatattgctcgtcctcagcagggtgatagcctcgatagttacgtctcaatccatccccgtaacagttatgccagttgttgcagaatcgacggc |
113 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||| | |||||| ||||| |||||||||| |
|
|
| T |
41375729 |
tggagatcatattgctcgtcctcagcagggtgataacctcgatagttgcgtctcaatccatccccgtgacagttgtaccagttattgcaaaatcgacggc |
41375630 |
T |
|
| Q |
114 |
gaaccagtcgagggggcagtaatctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaacgttt |
211 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
41375629 |
gaaccaactaaggaggcagtaatctcttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcgacgttt |
41375532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 333
Target Start/End: Complemental strand, 22799852 - 22799785
Alignment:
| Q |
266 |
acaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcatt |
333 |
Q |
| |
|
||||| |||||||||||||||| ||||| ||||| || ||| ||||||||||| ||||||||||||| |
|
|
| T |
22799852 |
acaccatcaagcgccctcagcatgacatcaaagtagagcgcgctcacagagccagcatccatagcatt |
22799785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 32 - 369
Target Start/End: Original strand, 38791 - 39128
Alignment:
| Q |
32 |
tcctcagcagggtgatagcctcgatagttacgtctcaatccatccccgtaacagttatgccagttgttgcagaatcgacggcgaaccagtcgagggggca |
131 |
Q |
| |
|
||||||||||| ||| | ||||||||||| || || | |||||| || ||||| |||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
38791 |
tcctcagcaggatgaaatcctcgatagttgcgccttagtccatctccagggcagttttgccagttgttgcagaatcgacggcgaattaactgagggggca |
38890 |
T |
|
| Q |
132 |
gtaatctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaacgtttattgtctccaaaagagacca |
231 |
Q |
| |
|
| || || |||||||||||||||| ||||||||| ||| ||| | ||| ||||||| ||||||||||||||||| ||| | ||||||||||||||||| |
|
|
| T |
38891 |
gcaaccttttgtaccagcctgaaatgaagcggaaatgggaatcctctcctattatctccctgcgataacgcgcaacatttttcgtctccaaaagagacca |
38990 |
T |
|
| Q |
232 |
gaaatcatgaaaaagtgtagcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagca |
331 |
Q |
| |
|
|| |||| |||||| |||||||||| | ||| |||||||||||| ||||||| |||||| ||||| || ||||||||||| ||| |||||||||| |
|
|
| T |
38991 |
aaagtcattgaaaagttcagcggtatcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatagcg |
39090 |
T |
|
| Q |
332 |
ttcttcaacaaaccttggacagtaggaatgcagggctc |
369 |
Q |
| |
|
||| | | ||||| || ||| ||||||||||| ||||| |
|
|
| T |
39091 |
ttcctaagcaaacgtttgacggtaggaatgcatggctc |
39128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 32 - 369
Target Start/End: Complemental strand, 32947 - 32610
Alignment:
| Q |
32 |
tcctcagcagggtgatagcctcgatagttacgtctcaatccatccccgtaacagttatgccagttgttgcagaatcgacggcgaaccagtcgagggggca |
131 |
Q |
| |
|
||||||||||| ||| | ||||||||||| || || | |||||| || ||||| |||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
32947 |
tcctcagcaggatgaaatcctcgatagttgcgccttagtccatctccagggcagttttgccagttgttgcagaatcgacggcgaattaactgagggggca |
32848 |
T |
|
| Q |
132 |
gtaatctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaacgtttattgtctccaaaagagacca |
231 |
Q |
| |
|
| || || |||||||||||||||| ||||||||| ||| ||| | ||| ||||||| ||||||||||||||||| ||| | ||||||||||||||||| |
|
|
| T |
32847 |
gcaaccttttgtaccagcctgaaatgaagcggaaatgggaatcctctcctattatctccctgcgataacgcgcaacatttttcgtctccaaaagagacca |
32748 |
T |
|
| Q |
232 |
gaaatcatgaaaaagtgtagcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagca |
331 |
Q |
| |
|
|| |||| |||||| |||||||||| | ||| |||||||||||| ||||||| |||||| ||||| || ||||||||||| ||| |||||||||| |
|
|
| T |
32747 |
aaagtcattgaaaagttcagcggtatcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatagcg |
32648 |
T |
|
| Q |
332 |
ttcttcaacaaaccttggacagtaggaatgcagggctc |
369 |
Q |
| |
|
||| | | ||||| || ||| ||||||||||| ||||| |
|
|
| T |
32647 |
ttcctaagcaaacgtttgacggtaggaatgcatggctc |
32610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 35 - 405
Target Start/End: Original strand, 74318 - 74688
Alignment:
| Q |
35 |
tcagcagggtgatagcctcgatagttacgtctcaatccatccccgtaacagttatgccagttgttgcagaatcgacggcgaaccagtcgagggggcagta |
134 |
Q |
| |
|
|||||||| ||||| ||||| |||||||| || | |||||| || |||||| ||||||||||||||||||||||| || | | || ||||||| |
|
|
| T |
74318 |
tcagcaggatgataccctcggtagttacgccttagtccatctccacgacagttgtgccagttgttgcagaatcgacgacggattaacttgggaggcagta |
74417 |
T |
|
| Q |
135 |
atctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaacgtttattgtctccaaaagagaccagaa |
234 |
Q |
| |
|
| ||||||||||||||||| || ||||| |||||||||||||| ||||||||||| |||||||| |||||||| ||| | ||||||||||||||||| || |
|
|
| T |
74418 |
acctcttgtaccagcctgagacgaagcgaaaacgggtgtcccctcctgttatctccctgcgatagcgcgcaacatttttcgtctccaaaagagaccaaaa |
74517 |
T |
|
| Q |
235 |
atcatgaaaaagtgtagcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattc |
334 |
Q |
| |
|
|||| || ||| |||||||||| || ||| ||||||||| || |||| || |||||| ||||| || ||||||||||| ||| |||||||||| ||| |
|
|
| T |
74518 |
ctcattgaagagttcagcggtatcaggtgtgataccgtcaagtgctctcaccattacatcaaagtaaagagcggtcacagaaccagcatccatagcgttc |
74617 |
T |
|
| Q |
335 |
ttcaacaaaccttggacagtaggaatgcagggctcagggtccagcatgaactgggtacaccttaaaatgca |
405 |
Q |
| |
|
|| | |||| | ||| ||||||||||| |||||| || |||||||| ||||| || || |||||||| |
|
|
| T |
74618 |
ttaagcaaatgcttgacggtaggaatgcatggctcaacatctagcatgaattgggtgcatctcaaaatgca |
74688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 32 - 370
Target Start/End: Original strand, 35865 - 36203
Alignment:
| Q |
32 |
tcctcagcagggtgatagcctcgatagttacgtctcaatccatccccgtaacagttatgccagttgttgcagaatcgacggcgaaccagtcgagggggca |
131 |
Q |
| |
|
||||||||||| ||| | ||||||||||| ||||||| ||||| | ||||| |||||||||||||||||||| || |||| | | || |||| |
|
|
| T |
35865 |
tcctcagcaggatgaaaccctcgatagttgcgtctcagcccatctctagggcagttgtgccagttgttgcagaatcggcgacgaattaactggggcggca |
35964 |
T |
|
| Q |
132 |
gtaatctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaacgtttattgtctccaaaagagacca |
231 |
Q |
| |
|
| || |||||||||||||||||||| ||||| || ||| |||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
35965 |
gcaacctcttgtaccagcctgaaacgaagcgaaagtgggagtcccctcctgttatctccctgcgataacgcgcaacattctttgtctccaaaagagacca |
36064 |
T |
|
| Q |
232 |
gaaatcatgaaaaagtgtagcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagca |
331 |
Q |
| |
|
||| |||| || ||| || | ||||| | ||| |||||||||||||||||||| |||||| ||||| || ||| | || || ||| | ||||||||| |
|
|
| T |
36065 |
gaagtcattgaagagttcagtgatatcaggagtgataccgtcaagcgccctcagcattacatcaaagtaaagagcgtttacggaaccagcgtccatagca |
36164 |
T |
|
| Q |
332 |
ttcttcaacaaaccttggacagtaggaatgcagggctca |
370 |
Q |
| |
|
||| | | ||||| || ||||||||||||||| |||||| |
|
|
| T |
36165 |
ttcctaagcaaacgtttgacagtaggaatgcatggctca |
36203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0897 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0897
Description:
Target: scaffold0897; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 35 - 336
Target Start/End: Complemental strand, 4138 - 3837
Alignment:
| Q |
35 |
tcagcagggtgatagcctcgatagttacgtctcaatccatccccgtaacagttatgccagttgttgcagaatcgacggcgaaccagtcgagggggcagta |
134 |
Q |
| |
|
|||||||| ||| | ||||||||||| ||||| | |||||| || |||||| ||||||||||||||||||| ||| ||||| | || || ||||| | |
|
|
| T |
4138 |
tcagcaggatgaaaccctcgatagttgcgtcttagtccatctccacgacagttgtgccagttgttgcagaatcaacgacgaactaaccggggaggcagca |
4039 |
T |
|
| Q |
135 |
atctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaacgtttattgtctccaaaagagaccagaa |
234 |
Q |
| |
|
| || |||||||||| ||| ||||||| |||| ||| ||||| ||||||||||| ||||||||||||||||| ||| ||||||||||||||||||| || |
|
|
| T |
4038 |
acctattgtaccagcatgagacaaagcagaaatgggaatcccctcctgttatctccctgcgataacgcgcaacattttttgtctccaaaagagaccaaaa |
3939 |
T |
|
| Q |
235 |
atcatgaaaaagtgtagcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattc |
334 |
Q |
| |
|
|||| || ||| |||||||||| | ||| ||||| ||||| ||||||| |||||| ||||| || ||||||||||| ||| ||||||| || ||| |
|
|
| T |
3938 |
gtcattgaagagttcagcggtatcaggagtgatgccgtcgagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatggcgttc |
3839 |
T |
|
| Q |
335 |
tt |
336 |
Q |
| |
|
|| |
|
|
| T |
3838 |
tt |
3837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: scaffold0304
Description:
Target: scaffold0304; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 83 - 334
Target Start/End: Complemental strand, 12526 - 12276
Alignment:
| Q |
83 |
cagttatgccagttgttgcagaatcgacggcgaaccagtcgagggggcagtaatctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctg |
182 |
Q |
| |
|
||||| ||||||||||| ||||||||||| |||| | | ||||||||| || ||||||||||||||| ||||||||| |||| ||| || || |||| |
|
|
| T |
12526 |
cagttgtgccagttgtttcagaatcgacgacgaattaa-ctagggggcagcaacctcttgtaccagcctaaaacaaagcagaaatgggaatcgcctcctg |
12428 |
T |
|
| Q |
183 |
ttatctctctgcgataacgcgcaacgtttattgtctccaaaagagaccagaaatcatgaaaaagtgtagcggtatcaagtctgacaccgtcaagcgccct |
282 |
Q |
| |
|
||||||| ||||||||||||||||| ||| ||||||||||||||||||| || |||| |||||| || ||||||| | ||| | ||||||||||||| |
|
|
| T |
12427 |
ttatctccctgcgataacgcgcaacattttttgtctccaaaagagaccaaaagtcattgaaaagttcagtggtatcaggagtgatatcgtcaagcgccct |
12328 |
T |
|
| Q |
283 |
cagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattc |
334 |
Q |
| |
|
||||| ||||| ||||| || ||| ||||||||||| | |||||||||||| |
|
|
| T |
12327 |
cagcattacatgaaagtaaagagcgctcacagagccagcgtccatagcattc |
12276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 83 - 334
Target Start/End: Complemental strand, 18277 - 18027
Alignment:
| Q |
83 |
cagttatgccagttgttgcagaatcgacggcgaaccagtcgagggggcagtaatctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctg |
182 |
Q |
| |
|
||||| ||||||||||| ||||||||||| |||| | | ||||||||| || ||||||||||||||| ||||||||| |||| ||| || || |||| |
|
|
| T |
18277 |
cagttgtgccagttgtttcagaatcgacgacgaattaa-ctagggggcagcaacctcttgtaccagcctaaaacaaagcagaaatgggaatcgcctcctg |
18179 |
T |
|
| Q |
183 |
ttatctctctgcgataacgcgcaacgtttattgtctccaaaagagaccagaaatcatgaaaaagtgtagcggtatcaagtctgacaccgtcaagcgccct |
282 |
Q |
| |
|
||||||| ||||||||||||||||| ||| ||||||||||||||||||| || |||| |||||| || ||||||| | ||| | ||||||||||||| |
|
|
| T |
18178 |
ttatctccctgcgataacgcgcaacattttttgtctccaaaagagaccaaaagtcattgaaaagttcagtggtatcaggagtgatatcgtcaagcgccct |
18079 |
T |
|
| Q |
283 |
cagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattc |
334 |
Q |
| |
|
||||| ||||| ||||| || ||| ||||||||||| | |||||||||||| |
|
|
| T |
18078 |
cagcattacatgaaagtaaagagcgctcacagagccagcgtccatagcattc |
18027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 4e-42; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 32 - 370
Target Start/End: Complemental strand, 14562533 - 14562190
Alignment:
| Q |
32 |
tcctcagcagggtgatagcctcgatagttacgtctcaatccatccccgtaacagttatgccagttgttgcagaatcgacggcgaacca-----gtcgagg |
126 |
Q |
| |
|
||||||||||| ||| | ||||||||||| || || | |||||| || ||||| |||||||||||||||||||||||||||| | | | || |
|
|
| T |
14562533 |
tcctcagcaggatgaaatcctcgatagttgcgccttagtccatctccagggcagttgtgccagttgttgcagaatcgacggcgaattaactggggggggg |
14562434 |
T |
|
| Q |
127 |
gggcagtaatctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaacgtttattgtctccaaaaga |
226 |
Q |
| |
|
|||||| || || ||||||||||||||||| ||||||||| ||| ||||| ||| ||||||| ||||||||||||||||| ||| | |||||||||||| |
|
|
| T |
14562433 |
gggcagcaaccttttgtaccagcctgaaacgaagcggaaatgggaatcccctcctattatctccctgcgataacgcgcaacatttttcgtctccaaaaga |
14562334 |
T |
|
| Q |
227 |
gaccagaaatcatgaaaaagtgtagcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatcca |
326 |
Q |
| |
|
||||| || |||| |||||| || || |||| | ||| |||||||| ||||||||||| |||||| ||||| || ||| ||||||||||| | |||| |
|
|
| T |
14562333 |
gaccaaaagtcattgaaaagttcagtggcatcaggagtgataccgtcaatcgccctcagcattacatcaaagtaaagagcgctcacagagccagcgtcca |
14562234 |
T |
|
| Q |
327 |
tagcattcttcaacaaaccttggacagtaggaatgcagggctca |
370 |
Q |
| |
|
|||||||| | | ||||| | ||| ||||||||||| |||||| |
|
|
| T |
14562233 |
tagcattcctaagcaaacgcttgacggtaggaatgcatggctca |
14562190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 32 - 370
Target Start/End: Complemental strand, 13284670 - 13284332
Alignment:
| Q |
32 |
tcctcagcagggtgatagcctcgatagttacgtctcaatccatccccgtaacagttatgccagttgttgcagaatcgacggcgaaccagtcgagggggca |
131 |
Q |
| |
|
||||||||||| ||| ||||||||||| |||||||| ||||| || ||||| |||||||||||||||||||| || |||| | ||||||| |
|
|
| T |
13284670 |
tcctcagcaggatgaattcctcgatagttgcgtctcaacccatctccagggcagttgtgccagttgttgcagaatcggcgacgaattaactaggggggca |
13284571 |
T |
|
| Q |
132 |
gtaatctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaacgtttattgtctccaaaagagacca |
231 |
Q |
| |
|
| || |||||||||||||||||||| ||||| ||| || |||||| || |||||||| ||||||||||| ||||| || | ||||||||||||||||| |
|
|
| T |
13284570 |
gcaacctcttgtaccagcctgaaacgaagcgaaaataggagtcccctcccgttatctccctgcgataacgagcaacattcttcgtctccaaaagagacca |
13284471 |
T |
|
| Q |
232 |
gaaatcatgaaaaagtgtagcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagca |
331 |
Q |
| |
|
|| |||| || ||| || ||||||| | ||| |||||||||||||||||||| |||||| ||||| || ||| ||||||||||| | |||||||| |
|
|
| T |
13284470 |
aaagtcattgaagagttcagtggtatcaggagtgataccgtcaagcgccctcagcattacatcaaagtaaagagcgctcacagagccagcgtccatagcg |
13284371 |
T |
|
| Q |
332 |
ttcttcaacaaaccttggacagtaggaatgcagggctca |
370 |
Q |
| |
|
||| | | ||||| | ||| ||||||||||| |||||| |
|
|
| T |
13284370 |
ttcctaagcaaacgcttgacggtaggaatgcatggctca |
13284332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 330
Target Start/End: Complemental strand, 14742024 - 14741960
Alignment:
| Q |
266 |
acaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagc |
330 |
Q |
| |
|
||||| |||||||||||||||| ||||| ||||| || ||| ||||||||||| |||||||||| |
|
|
| T |
14742024 |
acaccatcaagcgccctcagcatgacatcaaagtagagcgcgctcacagagccagcatccatagc |
14741960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: scaffold0319
Description:
Target: scaffold0319; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 83 - 333
Target Start/End: Original strand, 19335 - 19584
Alignment:
| Q |
83 |
cagttatgccagttgttgcagaatcgacggcgaaccagtcgagggggcagtaatctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctg |
182 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||| | | |||||||| || |||||||||||||||||||| ||| ||||| ||| ||||| |||| |
|
|
| T |
19335 |
cagttgtgccagttgttgcagaatcgacgacgaattaactg-gggggcagcaacctcttgtaccagcctgaaacgaagtggaaatgggaatcccctcctg |
19433 |
T |
|
| Q |
183 |
ttatctctctgcgataacgcgcaacgtttattgtctccaaaagagaccagaaatcatgaaaaagtgtagcggtatcaagtctgacaccgtcaagcgccct |
282 |
Q |
| |
|
||||||| ||||||||||||||||| ||| ||||||||||||||||||| || |||| |||||| || || |||| | ||| |||||||| |||| | |
|
|
| T |
19434 |
ttatctccctgcgataacgcgcaacattttttgtctccaaaagagaccaaaagtcattgaaaagttcagtggcatcaggagtgataccgtcaatcgccat |
19533 |
T |
|
| Q |
283 |
cagcagtacatcgaagtacagggcggtcacagagccaacatccatagcatt |
333 |
Q |
| |
|
||| | |||||| ||||| || ||| ||||||||||| | ||||||||||| |
|
|
| T |
19534 |
cagaattacatcaaagtaaagagcgctcacagagccagcgtccatagcatt |
19584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 268 - 370
Target Start/End: Original strand, 13680 - 13782
Alignment:
| Q |
268 |
accgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattcttcaacaaaccttggacagtaggaatgcagggc |
367 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||| || ||| ||||||||||| | |||||||||||| | | ||||| | ||| ||||||||||| ||| |
|
|
| T |
13680 |
accgtcaatcgccctcagcattacatcaaagtaaagagcgctcacagagccagcgtccatagcattcctaagcaaacgcttgacggtaggaatgcatggc |
13779 |
T |
|
| Q |
368 |
tca |
370 |
Q |
| |
|
||| |
|
|
| T |
13780 |
tca |
13782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 137 - 370
Target Start/End: Original strand, 28605 - 28838
Alignment:
| Q |
137 |
ctcttgtaccagcctgaaacaaagcggaaacgggtgtccccgcctgttatctctctgcgataacgcgcaacgtttattgtctccaaaagagaccagaaat |
236 |
Q |
| |
|
|||||||||||||||||||| ||||| ||| ||| |||||| ||||||||||| ||||||||||||||||| ||| | ||||||||||||||||| || | |
|
|
| T |
28605 |
ctcttgtaccagcctgaaacgaagcgaaaatgggagtcccctcctgttatctccctgcgataacgcgcaacatttttcgtctccaaaagagaccaaaagt |
28704 |
T |
|
| Q |
237 |
catgaaaaagtgtagcggtatcaagtctgacaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcattctt |
336 |
Q |
| |
|
|| || ||| || ||||||| | ||| |||||||||||||||||||| |||||| ||||| || ||| | ||||||||| | |||||||| ||| | |
|
|
| T |
28705 |
caatgaagagttcagtggtatcatgagtgataccgtcaagcgccctcagcattacatcaaagtaaagagcgcttacagagccagcgtccatagcgttcct |
28804 |
T |
|
| Q |
337 |
caacaaaccttggacagtaggaatgcagggctca |
370 |
Q |
| |
|
| ||||| | ||| ||||||||||| |||||| |
|
|
| T |
28805 |
aagcaaacgcttgacggtaggaatgcatggctca |
28838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0282 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0282
Description:
Target: scaffold0282; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 333
Target Start/End: Complemental strand, 2215 - 2148
Alignment:
| Q |
266 |
acaccgtcaagcgccctcagcagtacatcgaagtacagggcggtcacagagccaacatccatagcatt |
333 |
Q |
| |
|
||||| |||||||||||||||| ||||| ||||| || || ||||||||||| ||||||||||||| |
|
|
| T |
2215 |
acaccatcaagcgccctcagcatgacatcaaagtagagcacgctcacagagccagcatccatagcatt |
2148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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