View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9169_low_2 (Length: 819)

Name: NF9169_low_2
Description: NF9169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9169_low_2
NF9169_low_2
[»] chr2 (1 HSPs)
chr2 (18-798)||(9222405-9223181)


Alignment Details
Target: chr2 (Bit Score: 685; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 685; E-Value: 0
Query Start/End: Original strand, 18 - 798
Target Start/End: Complemental strand, 9223181 - 9222405
Alignment:
Q  18 tttattgcttttgattctaagaagaactcagaaccagtgggagaagataatgatcaagccctagatgcagttatgaaactttattctgccttcaaaaata 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9223181 tttattgcttttgattctaagaagaactcagaaccagtgggagaagataatgatcaagccctagatgcagttatgaaactttattctgccttcaaaaata 9223082  T
Q  118 aaaacatacaagaattgtctgagatacttgcagatgaatgtagatgtgtgtgcaatttcctctcattcttccaagctttccaaggaaaaacggtatctgc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9223081 aaaacatacaagaattgtctgagatacttgcagatgaatgtagatgtgtgtgcaatttcctctcattcttccaagctttccaaggaaaaacggtatctgc 9222982  T
Q  218 tcctattttcagctcattcaacaacaataattgtcttgtttttagctttctacaacaatatttttgcattctcgttagtgacataaattacggtggcaac 317  Q
    ||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9222981 tcctattttcagctcattca---acaataattgtcttgtttttagctttctacaacaatatttttgcattctggttagtgacataaattacggtggcaac 9222885  T
Q  318 aataatttacctataaaagtttgtgttttagcacataaagtaattgtgtattggctaaatttttcaaatatccaaaataatagagacaccgtcataattc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  9222884 aataatttacctataaaagtttgtgttttagcacataaagtaattttgtattggctaaatttttcaaatatccaaaataat--agacaccgtcataattc 9222787  T
Q  418 tatatggtctaaatttttatctatctcatcatatgagtttaaactttaaattgatataaaagacgtggttggaaggaaagaatacactaaagtggtcagg 517  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  9222786 tatatggtctaaatttttatctatctcatcgtatgagtttaaactttaaattgatataaaagacgtggttggaaggaaagaatacactaaagtggtctgg 9222687  T
Q  518 tttctcaaccgagattagtcatccctaatatgcgtggcataaactatccaattcacaattatcaac-nnnnnnnntctaatttgtcttatggttcataat 616  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||         | |||||||||||||||||||||||    
T  9222686 tttctcgaccgagattagtcatccgtaatatgtgtggcataaactatccaattcacaatcatcaacaaaaaaaaatataatttgtcttatggttcataat 9222587  T
Q  617 ctaattcatattgttttatggttcatccttttttgcattgcagcaagtgttggaattcttttctcatttgatacgtttatttggtgacaacattcaaatt 716  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9222586 ctaattcatattgttttatggttcatccttttttgcattgcagcaagtgttggaattcttttctcatttgatacgtttatttggtgacaacattcaaatt 9222487  T
Q  717 gtggtgaaacccactcttcatgacggcatgaatgttggggtccattggaaatttggtaaatcataatcatattctctcctct 798  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9222486 gtggtgaaacccactcttcatgacggcatgaatgttggggtccattggaaatttggtaaatcataatcataatctctcctct 9222405  T

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