View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9169_low_21 (Length: 422)
Name: NF9169_low_21
Description: NF9169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9169_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 6 - 414
Target Start/End: Complemental strand, 10341593 - 10341186
Alignment:
| Q |
6 |
ttgttgttgttgtgttaaccctctggttctctcatattttggtaatctgaaattcagttagaagacaagtgacatgtaaagtctggctatgaattattcc |
105 |
Q |
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| T |
10341593 |
ttgttgttgttgtgttaaccctctggttctctcatattttggtaatcttaaattcagttagaagacaagtgacatgtaaagtctggctatgaattattcc |
10341494 |
T |
|
| Q |
106 |
atttaggatttgaatttggattctcctgaacgatctgtccttaagtgaaactcattaatcacttgagctcaatcactcgagcactctaaaaaccaatgtg |
205 |
Q |
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| T |
10341493 |
atttaggatttgaattcggattctcgtgaacgatctgtccttaagtgaaactcattaatcacttgagctcaatcactcgagtactctaaaaaccaatgtg |
10341394 |
T |
|
| Q |
206 |
cgtttagtgaatgatctattcgagactcggacgacaccataagctcaactcaatctcaaagtggatctcagacaatctggcccacccaagtggtgcaggt |
305 |
Q |
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| T |
10341393 |
cgtttagtgaatgatctattcgagactccgacgacaccataagctcaactcaatctcaaagtggatctcagacaatctggcccacccaattggtgcaggt |
10341294 |
T |
|
| Q |
306 |
ttggtcacccttttggaccataccagaactacttccttagctttgttgatttattaaaaccatcatgaaaccctcaatcattgaaagaaacaactctttg |
405 |
Q |
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| T |
10341293 |
ttggtcacccttttggactataccagaactacttccttagctttgttgatttatt-aaaccatcatgaaaccctcaatcattgaaagaaacaactctttg |
10341195 |
T |
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| Q |
406 |
taaccacca |
414 |
Q |
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| T |
10341194 |
taaccacca |
10341186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 182
Target Start/End: Original strand, 13126360 - 13126424
Alignment:
| Q |
118 |
aatttggattctcctgaacgatctgtccttaagtgaaactcattaatcacttgagctcaatcact |
182 |
Q |
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||||||| ||||| ||||||| |||||| |||||||||||||| |||||||||||||||||| |
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| T |
13126360 |
aatttgggttctctcgaacgatacgtcctttggtgaaactcattaaccacttgagctcaatcact |
13126424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 38753632 - 38753592
Alignment:
| Q |
142 |
gtccttaagtgaaactcattaatcacttgagctcaatcact |
182 |
Q |
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|||||||| ||||||||||||| ||||||||||||| |||| |
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| T |
38753632 |
gtccttaaatgaaactcattaaccacttgagctcaaccact |
38753592 |
T |
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