View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9169_low_23 (Length: 417)
Name: NF9169_low_23
Description: NF9169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9169_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 16 - 394
Target Start/End: Complemental strand, 7054874 - 7054481
Alignment:
| Q |
16 |
tattcgataaaatatatttaaatttgtgcgtcggcaccggtcacacactagtatcacatagaataactcaactattttccgatggctaacattaagagga |
115 |
Q |
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| T |
7054874 |
tatttgataaaatatatctaaatttgtgcgtcggcacgagttacacactagtatcacatagaataactcaactattttccgatggctaacataaagagga |
7054775 |
T |
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| Q |
116 |
ggacaaggacgagctaacannnnnnnnn-aataacaaatgttaattattaggttnnnnnnnntttcattcgtttggctttgaacacaaaacctccaattc |
214 |
Q |
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| T |
7054774 |
ggacaaggacgagctaacattttttttttaataacaaatgttagttattaggttaatttttttttcatttgtttggctttgaatacaaaacctccaattc |
7054675 |
T |
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| Q |
215 |
tttactttttactcaaataagttgagctatccaattttctcatagatgagctaatgtcactagggaaatagtgtatattgaatattacttagttgac--- |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
7054674 |
cttactttttactcaaataagttgagctatccaattttctcatagacgagctaatgtcactagagaaatagtgtatattgaatattactgagttgacctt |
7054575 |
T |
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| Q |
312 |
-----------aaaattattgattgccatttaagtatggttttttgtatttgtatatcattgcgcttgtaaatattataatttgtgtggtccat |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7054574 |
acactcatatgaaaattattgattgccatttaagtatggttttttgtatttgtatatcattgcgcttgtaaatattataatttgtgtggtccat |
7054481 |
T |
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