View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9169_low_28 (Length: 401)
Name: NF9169_low_28
Description: NF9169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9169_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 103 - 386
Target Start/End: Original strand, 51823339 - 51823622
Alignment:
| Q |
103 |
gttcagttgcaattatgaaagtatttcattctctaatgttagtagagtaattcaatattctggtaattaacctaaaatgtaattgggcctttgatcacct |
202 |
Q |
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| T |
51823339 |
gttcagttgcaattatgaaagtatttcattctctaatgttagtagagtaattcaatattctggtaattaacctaaaatgtacttgagcctttgatcacct |
51823438 |
T |
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| Q |
203 |
gtactatataaagaagtatagaaagcaataaagttagttagtaagttctcaattatgttttgctcccttttactttatagttggtgcaattgaagaggaa |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
51823439 |
gtactatataaagaagtatagaaagcaataaagttagttagttagttctcaattatgttttgctcccttttactttacagatggtgcaattgaagaggaa |
51823538 |
T |
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| Q |
303 |
accatggaaggctgaaaaacaacctttgcaaagtggaaaaacaatacaaaaaaggtaaagagctcaaattcctaagataaagat |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||| |
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| T |
51823539 |
accatggaaggctgaaaaacaacctttgcaaagtggaaaaacaatacaaaaaagggaaagagctcaaatactaaagataaagat |
51823622 |
T |
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