View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9169_low_29 (Length: 391)
Name: NF9169_low_29
Description: NF9169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9169_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 51746540 - 51746155
Alignment:
| Q |
1 |
cagcagataatattagccactctaggatatgttacttgagtattgatgtgttgcgagtctataagtaaactataaaaatcattagaatttgacagcatat |
100 |
Q |
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| T |
51746540 |
cagcagataatattaggcactctaggatatgttacttgagtattgatgtgttgcgagtctataagtaaactataaaaatcattagaatttgacagcatat |
51746441 |
T |
|
| Q |
101 |
atcatatggaattgtaataaactcgcttcatttttactttcattcaaaaggaaaaacaaacctctctacaaaatatgaagcaatctttccagcaacaaca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
51746440 |
atcatatggaattgtaataaactcgcttcatttttactttcattcaaaaggaaaaacaaacctctctacaaaatacgaagcaatctttccagcaacaaca |
51746341 |
T |
|
| Q |
201 |
tatgcaggagccaaatctccaagttttgactccaaagcaggggcagttgcctgcaacaaccatcagaatgcatctatattgatcaaacgggaagatagga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51746340 |
tatgcaggagccaaatctccaagttttgactccaaaccaggggcagttgcctgcaacaaccatcagaatgcatctatattgatcaaacgggaagatagga |
51746241 |
T |
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| Q |
301 |
ataccagctagtacatgaaaaaacaattcctaatcatttaaaacctcaagtgcaactttagaccaagcctttttcttgatgtccat |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51746240 |
ataccagctagtacatgaaaaaacaattcctaatcatttaaaacctcaagtgcaactttagaccaagcctttttcttgatgtccat |
51746155 |
T |
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