View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9169_low_30 (Length: 386)
Name: NF9169_low_30
Description: NF9169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9169_low_30 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 14 - 368
Target Start/End: Original strand, 48790091 - 48790445
Alignment:
| Q |
14 |
ataatactatcatattgttcgaaaacacagattgcattcttcaagatgcttggggtaccatcatcagagtgaatgtatgtatcaatgaattgagcatgtg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
48790091 |
ataatactatcatattgttcgaaaacacaaattgcattcttcaagatgcttggggtaccatcatcagagtgaatgtatgtatcaatgaattgggcatgtg |
48790190 |
T |
|
| Q |
114 |
gtggacaatcacggttgggtatcaaagacacagtcgatagaccaaatccaaactcaccagaatcgaaaaatgtcttaaagtaaaattcttctgttggatc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48790191 |
gtggacaatcacggttgggtatcaaagacacagtcgatagaccaaatccaaactcaccagaatcgaaaaatgtcttaaagtaaaattcttctgttggatc |
48790290 |
T |
|
| Q |
214 |
ttggtatggcacaaacaactcagaaatgtaccctttgtataatactctacgatatatgtgcttctctagatcataaatagatgcaagagatattacaata |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
48790291 |
ttggtatggcacaaacaactcagaaatgtaccctttgtataatactctacgatatatgtgcttctctagatcataaatagatgcaagggatattacaata |
48790390 |
T |
|
| Q |
314 |
ccagctcgtacatcaaatcctatatgaaacttccaattggcccaactgaataaac |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48790391 |
ccagctcgtacatcaaatcctatatgaaacttccaattggcccaactgaataaac |
48790445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 14 - 368
Target Start/End: Original strand, 15825622 - 15825976
Alignment:
| Q |
14 |
ataatactatcatattgttcgaaaacacagattgcattcttcaagatgcttggggtaccatcatcagagtgaatgtatgtatcaatgaattgagcatgtg |
113 |
Q |
| |
|
||||||||| |||||||||| |||||||| |||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||| |||| |||| |
|
|
| T |
15825622 |
ataatactaccatattgttcaaaaacacaaattgcattcttcaagaggcttggtgtaccatctacagagtgaatgtatgtatcaatgaaatgagagtgtg |
15825721 |
T |
|
| Q |
114 |
gtggacaatcacggttgggtatcaaagacacagtcgatagaccaaatccaaactcaccagaatcgaaaaatgtcttaaagtaaaattcttctgttggatc |
213 |
Q |
| |
|
||||||| ||||| || ||||||||||| ||||| ||| ||||||||||| |||| |||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
15825722 |
gtggacagtcacgattaggtatcaaagaaacagtagatcgaccaaatccatactctccagcatcgaaaaatgtcttaaagtaaaactcttctgttggatc |
15825821 |
T |
|
| Q |
214 |
ttggtatggcacaaacaactcagaaatgtaccctttgtataatactctacgatatatgtgcttctctagatcataaatagatgcaagagatattacaata |
313 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||| || || || || |||||||||||||| ||||||| |||| |
|
|
| T |
15825822 |
ttggtatggcacaaacaactcagaaatataccctttgtataatactctacgagatttgtgtttttcaaggtcgtaaatagatgcaagtgatattataata |
15825921 |
T |
|
| Q |
314 |
ccagctcgtacatcaaatcctatatgaaacttccaattggcccaactgaataaac |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
15825922 |
ccagctcgtacatcaaatcctatatgaaacttccagttggcccaactgaataaac |
15825976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 24 - 363
Target Start/End: Original strand, 48816402 - 48816741
Alignment:
| Q |
24 |
catattgttcgaaaacacagattgcattcttcaagatgcttggggtaccatcatcagagtgaatgtatgtatcaatgaattgagcatgtggtggacaatc |
123 |
Q |
| |
|
|||||||||| || ||||| |||||||||||||| | |||||| ||||||||| | ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
48816402 |
catattgttcaaacacacaaattgcattcttcaataggcttggtgtaccatcagccgagtgaatgtatgtatcaatgaactgagcatgtggtggacaatc |
48816501 |
T |
|
| Q |
124 |
acggttgggtatcaaagacacagtcgatagaccaaatccaaactcaccagaatcgaaaaatgtcttaaagtaaaattcttctgttggatcttggtatggc |
223 |
Q |
| |
|
||| || |||||||||||||| || || ||||||||||||||||| |||||||| || || |||||||||||||| ||||| ||||| ||||| || ||| |
|
|
| T |
48816502 |
acgattaggtatcaaagacaccgttgacagaccaaatccaaactctccagaatcaaagaaagtcttaaagtaaaactcttcggttgggtcttgataaggc |
48816601 |
T |
|
| Q |
224 |
acaaacaactcagaaatgtaccctttgtataatactctacgatatatgtgcttctctagatcataaatagatgcaagagatattacaataccagctcgta |
323 |
Q |
| |
|
||||| | ||| |||||||| |||||||| | ||| | ||| | | || ||||||||||| |||||||||||||| ||||| || ||||||||||||| |
|
|
| T |
48816602 |
acaaatagctcggaaatgtagcctttgtagagtacacggcgagacttatgtttctctagatcgtaaatagatgcaagtgatatcactataccagctcgta |
48816701 |
T |
|
| Q |
324 |
catcaaatcctatatgaaacttccaattggcccaactgaa |
363 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
48816702 |
catcaaatcctatatgaaacttccagttggcccagctgaa |
48816741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 25 - 357
Target Start/End: Complemental strand, 48834095 - 48833763
Alignment:
| Q |
25 |
atattgttcgaaaacacagattgcattcttcaagatgcttggggtaccatcatcagagtgaatgtatgtatcaatgaattgagcatgtggtggacaatca |
124 |
Q |
| |
|
||||||||| |||| ||| | ||||||||||||| | |||| | ||| || | |||||| |||||||||||||||| | |||| ||||||||||||| |
|
|
| T |
48834095 |
atattgttcaaaaatacaaactgcattcttcaaggggattggtgcaccctctgctgagtgagtgtatgtatcaatgaactcggcatttggtggacaatca |
48833996 |
T |
|
| Q |
125 |
cggttgggtatcaaagacacagtcgatagaccaaatccaaactcaccagaatcgaaaaatgtcttaaagtaaaattcttctgttggatcttggtatggca |
224 |
Q |
| |
|
| || |||||||||||||| || || | ||||||| ||||||| |||| ||| || || ||||||||||||||||| || | ||||||||||||||||| |
|
|
| T |
48833995 |
ggattaggtatcaaagacaccgttgacaaaccaaattcaaactctccagcatcaaagaaagtcttaaagtaaaattcatcagatggatcttggtatggca |
48833896 |
T |
|
| Q |
225 |
caaacaactcagaaatgtaccctttgtataatactctacgatatatgtgcttctctagatcataaatagatgcaagagatattacaataccagctcgtac |
324 |
Q |
| |
|
|||| | ||||||||||| ||||||||||||||||||||| || |||||||||||||||| || | ||||| | ||||||| || |||||||||||| |
|
|
| T |
48833895 |
caaaaagttcagaaatgtatcctttgtataatactctacgagatttgtgcttctctagatcgtaggttgatgccaatgatattataacaccagctcgtac |
48833796 |
T |
|
| Q |
325 |
atcaaatcctatatgaaacttccaattggccca |
357 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
48833795 |
atcaaatcctatgtgaaacttccaattggccca |
48833763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 24 - 363
Target Start/End: Original strand, 48807839 - 48808179
Alignment:
| Q |
24 |
catattgttcgaaaacacagattgcattcttcaagatgcttggggtaccatcatcagagtgaatgtatgtatcaatgaat----tgagcatgtggtggac |
119 |
Q |
| |
|
|||||||||| || | ||| |||||||||||||| | |||||| ||||||||| | |||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
48807839 |
catattgttcaaacagacaaattgcattcttcaataggcttggtgtaccatcagccgagtgaatgtatgtatgtatgaatgaactgagcatgtggtggac |
48807938 |
T |
|
| Q |
120 |
aatcacggttgggtatcaaagacacagtcgatagaccaaatccaaactcaccagaatcgaaaaatgtcttaaagtaaaattcttctgttggatcttggta |
219 |
Q |
| |
|
||||||| || |||||||||||||| || || || ||||||||||||| |||||||| || || |||||||||||||||||||| ||||| ||||| || |
|
|
| T |
48807939 |
aatcacgattaggtatcaaagacaccgttgacagggcaaatccaaactctccagaatcaaagaaagtcttaaagtaaaattcttcggttgggtcttgata |
48808038 |
T |
|
| Q |
220 |
tggcacaaacaactcagaaatgtaccctttgtataatactctacgatatatgtgcttctctagatcataaatagatgcaagagatattacaataccagct |
319 |
Q |
| |
|
|||||||| | ||| |||||||| ||||||| | ||| | |||| | |||| ||||||| ||| ||||| ||| ||| ||||| || |||| |||| |
|
|
| T |
48808039 |
aggcacaaatagctcggaaatgta-gctttgtagagtacacgacgaaacttgtgtttctctatatcgtaaat--atgtaagtgatatcactatactagct |
48808135 |
T |
|
| Q |
320 |
cgtacatcaaatcctatatgaaacttccaattggcccaactgaa |
363 |
Q |
| |
|
|||||| ||||| ||||||||| ||||| ||||||| ||||| |
|
|
| T |
48808136 |
cgtacagtaaatcttatatgaaatttccaggtggcccagctgaa |
48808179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University