View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9169_low_32 (Length: 374)
Name: NF9169_low_32
Description: NF9169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9169_low_32 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 30 - 374
Target Start/End: Original strand, 8342234 - 8342582
Alignment:
| Q |
30 |
cataactgaaattcctcttgattattattgaaatataagtagcaatctgctagttacatttgagaacctcttcgatttatagag--tgaattggcgaggt |
127 |
Q |
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| T |
8342234 |
cataactgaaattcctcttgattattattgaaatataagtagcaatctgctagttacatttgagaacctcttcgatttatagagagtgaattggtgaggt |
8342333 |
T |
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| Q |
128 |
atcaattctatcgaaaagtgaggccggaagacagagggtgtgtctaatatgattggcctcggagttg--tgcctccaaaacgacaggagacggcacatcc |
225 |
Q |
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| T |
8342334 |
atcaattctatcgaaaagtgaggccggaagacagagggtgtgtctgatatgattggcctcggagtggcatgcctccaaaacgacaggagacggcacatcc |
8342433 |
T |
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| Q |
226 |
accaccgttggaggtggaggcaacaacagtatccactgcgtttctattaaaaagacaacatggttaaactaggccttttggaaacgttccatttatgagt |
325 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
8342434 |
accaccattggaggtggaggcaacaacagtatccactgcgtttctattaaaaagacaacatggttaagctaggccatttggaaacgttccatttatgagt |
8342533 |
T |
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| Q |
326 |
cgttcgtgagatttgtatgacacctatgtcgtgcacattagcatttctc |
374 |
Q |
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| T |
8342534 |
cgttcgtgagatttgtatgacacctatgtcgtgcacattagcatttctc |
8342582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 30 - 232
Target Start/End: Complemental strand, 3228315 - 3228110
Alignment:
| Q |
30 |
cataactgaaattcctcttgattattattgaaatataagtagcaatctgctagttacatttgagaacctcttcgatttat--agagtgaattggcgaggt |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| |||||||||||||||||| |
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| T |
3228315 |
cataactgaaattcctcttgattattattgaaatataagtagcaatctgccagttacatctgggaacctcttcgatttatagagagtgaattggcgaggt |
3228216 |
T |
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| Q |
128 |
atcaattctatcgaaaagtgaggccggaagacagagggtgtgtctaatatgattggcctcggagttg--tgcctccaaaacgacaggagacggcacatcc |
225 |
Q |
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||||||||||| ||||||||||| ||||||||||| ||||| ||| ||||||||||||||||||| | ||||||||||| |||||||| |||||||||| |
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| T |
3228215 |
atcaattctattgaaaagtgaggtcggaagacaga-ggtgtttctgatatgattggcctcggagtggcatgcctccaaaatgacaggagtcggcacatcc |
3228117 |
T |
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| Q |
226 |
accaccg |
232 |
Q |
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||||||| |
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| T |
3228116 |
accaccg |
3228110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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