View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9169_low_36 (Length: 353)
Name: NF9169_low_36
Description: NF9169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9169_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 100 - 339
Target Start/End: Original strand, 44016552 - 44016791
Alignment:
| Q |
100 |
caaagcaacattgtcattcaaaatttcatcaatttcctccaactcattccatctagcatatgcttctctcacatagttttgtatgtagctctgcaaatta |
199 |
Q |
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| T |
44016552 |
caaagcaacgttgtcattcaaaacttcatcaatttcctccaactcattccatctagcatatgcttctctcacatagttttgtatgtagctctgcaaatta |
44016651 |
T |
|
| Q |
200 |
aatgaacaatataggttaaaaatcaatgggtagtagtaattaaagagattgaacaaggtgagttttagtataaataaataaatgtaccttgtccatgttg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44016652 |
aatgaacaatataggttaaaaatcaatgggtagtagtaattaaagagattgaacaaggtgagttttagtataaataaataaatgtaccttgtccatgttg |
44016751 |
T |
|
| Q |
300 |
caaatgtctcggttgggaatggtttggccattgatgttag |
339 |
Q |
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| T |
44016752 |
caaatgtctcggttgggaatggtttggccattgatgttag |
44016791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 100 - 339
Target Start/End: Complemental strand, 44030027 - 44029788
Alignment:
| Q |
100 |
caaagcaacattgtcattcaaaatttcatcaatttcctccaactcattccatctagcatatgcttctctcacatagttttgtatgtagctctgcaaatta |
199 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44030027 |
caaagcaacgttgtcattcaaaacttcatcaatttcctccaactcattccatctagcatatgcttctctcacatagttttgtatgtagctctgcaaatta |
44029928 |
T |
|
| Q |
200 |
aatgaacaatataggttaaaaatcaatgggtagtagtaattaaagagattgaacaaggtgagttttagtataaataaataaatgtaccttgtccatgttg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44029927 |
aatgaacaatataggttaaaaatcaatgggtagtagtaattaaagagattgaacaaggtgagttttagtataaataaataaatgtaccttgtccatgttg |
44029828 |
T |
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| Q |
300 |
caaatgtctcggttgggaatggtttggccattgatgttag |
339 |
Q |
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| T |
44029827 |
caaatgtctcggttgggaatggtttggccattgatgttag |
44029788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 44016492 - 44016386
Alignment:
| Q |
1 |
acaatccaattaaaattcagcgtgacataataaattcagttatatgaatttgatttgttttttgaatctcactctacaggtggaaccgtggagcaatttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44016492 |
acaatccaattaaaattcagcgtgacataataaattcagttatatgaatttgatttgttttttgaatctcactctacaggtggaaccgtggagcaatttc |
44016393 |
T |
|
| Q |
101 |
aaagcaa |
107 |
Q |
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||||||| |
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| T |
44016392 |
aaagcaa |
44016386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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