View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9169_low_44 (Length: 302)

Name: NF9169_low_44
Description: NF9169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9169_low_44
NF9169_low_44
[»] chr6 (3 HSPs)
chr6 (38-201)||(15728856-15729018)
chr6 (38-198)||(5077704-5077863)
chr6 (257-286)||(15729074-15729103)
[»] chr7 (3 HSPs)
chr7 (38-198)||(11344630-11344789)
chr7 (38-156)||(45455246-45455363)
chr7 (45-97)||(9662169-9662220)
[»] chr3 (13 HSPs)
chr3 (45-198)||(20336488-20336640)
chr3 (48-200)||(20286685-20286839)
chr3 (45-182)||(20314611-20314747)
chr3 (45-198)||(36175395-36175547)
chr3 (45-198)||(20288055-20288207)
chr3 (48-168)||(20335384-20335501)
chr3 (48-168)||(20313514-20313631)
chr3 (38-97)||(40364445-40364503)
chr3 (105-167)||(48083419-48083481)
chr3 (45-97)||(18442381-18442432)
chr3 (45-97)||(19487455-19487506)
chr3 (45-97)||(21074212-21074263)
chr3 (45-97)||(53624294-53624345)
[»] chr4 (7 HSPs)
chr4 (45-198)||(42871227-42871379)
chr4 (105-190)||(31967267-31967352)
chr4 (45-97)||(13533193-13533244)
chr4 (38-97)||(34438529-34438587)
chr4 (45-97)||(10168714-10168765)
chr4 (45-90)||(14524350-14524394)
chr4 (38-90)||(44503618-44503669)
[»] chr8 (5 HSPs)
chr8 (45-198)||(26697664-26697816)
chr8 (151-201)||(19915172-19915222)
chr8 (45-134)||(9854774-9854862)
chr8 (105-173)||(30673955-30674022)
chr8 (38-90)||(38696946-38696997)
[»] chr1 (5 HSPs)
chr1 (105-198)||(44276312-44276406)
chr1 (38-97)||(19466140-19466198)
chr1 (38-97)||(36509934-36509992)
chr1 (45-95)||(30535603-30535652)
chr1 (45-90)||(7161262-7161306)
[»] scaffold0128 (1 HSPs)
scaffold0128 (45-198)||(22113-22266)
[»] chr2 (4 HSPs)
chr2 (52-97)||(28562742-28562786)
chr2 (45-97)||(44192381-44192431)
chr2 (45-97)||(2277401-2277452)
chr2 (45-97)||(34147269-34147320)
[»] chr5 (1 HSPs)
chr5 (45-97)||(32757958-32758009)


Alignment Details
Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 38 - 201
Target Start/End: Original strand, 15728856 - 15729018
Alignment:
Q  38 taaccttaaatgtctatggtggaccaacattatagatagttccaccgtagaccctattaannnnnnnaatttaaaccattcgatttattttttaaaaaga 137  Q
    |||||| |||| |||||||||||||||||||||||||||| ||||| |||||||||||||       |||||||| ||| ||||||||||||| ||||||    
T  15728856 taacctcaaatatctatggtggaccaacattatagatagt-ccaccatagaccctattaatttctttaatttaaatcatccgatttatttttttaaaaga 15728954  T
Q  138 gaactgttagatcatgaaggtcaattgtatgttacagtataccatcaacaactaatatttttcc 201  Q
    | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15728955 ggactattagatcatgaaggtcaattgtatgttacagtataccatcaacaactaatatttttcc 15729018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 38 - 198
Target Start/End: Complemental strand, 5077863 - 5077704
Alignment:
Q  38 taaccttaaatgtctatggtggaccaacattatagatagttccaccgtagaccctattaannnnnnnaatttaaaccattcgatttattttttaaaaaga 137  Q
    |||||| ||||||||| | | || |||||||||| ||||| ||||||||||||||| |||       ||||||||||||||||||||||||||||||||     
T  5077863 taacctcaaatgtctacgtttgatcaacattatatatagt-ccaccgtagaccctactaatttctttaatttaaaccattcgatttattttttaaaaagg 5077765  T
Q  138 gaactgttagatcatgaaggtcaattgtatgttacagtataccatcaacaactaatatttt 198  Q
    | | |||||||||||||| ||| ||| |||||||  |||||||||||| ||||| ||||||    
T  5077764 gcagtgttagatcatgaatgtccattatatgttatggtataccatcaataactactatttt 5077704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 286
Target Start/End: Original strand, 15729074 - 15729103
Alignment:
Q  257 gaaaaatccaacaaaaaacacccagaaaac 286  Q
    ||||||||||||||||||||||||||||||    
T  15729074 gaaaaatccaacaaaaaacacccagaaaac 15729103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 38 - 198
Target Start/End: Original strand, 11344630 - 11344789
Alignment:
Q  38 taaccttaaatgtctatggtggaccaacattatagatagttccaccgtagaccctattaannnnnnnaatttaaaccattcgatttattttttaaaaaga 137  Q
    |||||| |||| |||||||||| ||||||||||||||||| | ||| || ||||||||||       |||||||||||||||||||||||||||||||||    
T  11344630 taacctcaaatatctatggtggtccaacattatagatagtgc-accatataccctattaatttctttaatttaaaccattcgatttattttttaaaaaga 11344728  T
Q  138 gaactgttagatcatgaaggtcaattgtatgttacagtataccatcaacaactaatatttt 198  Q
    | ||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||    
T  11344729 ggactgttagatcatgaagatccattgtatgttacagtatactatcaacaactaatatttt 11344789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 38 - 156
Target Start/End: Complemental strand, 45455363 - 45455246
Alignment:
Q  38 taaccttaaatgtctatggtggaccaacattatagatagttccaccgtagaccctattaannnnnnnaatttaaaccattcgatttattttttaaaaaga 137  Q
    ||||| |||||| |||| ||| |||||||||||| ||||| |||| | ||| ||||||||       |||||||||||||||||||||||||||||||||    
T  45455363 taaccctaaatgcctatagtgtaccaacattatatatagt-ccactgcagaacctattaatttctttaatttaaaccattcgatttattttttaaaaaga 45455265  T
Q  138 gaactgttagatcatgaag 156  Q
    | |  ||| ||||||||||    
T  45455264 ggagcgttggatcatgaag 45455246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 9662220 - 9662169
Alignment:
Q  45 aaatgtctatggtggaccaacattatagatagttccaccgtagaccctattaa 97  Q
    |||||||||||||||||||||||||||||||| |||||| |||||| ||||||    
T  9662220 aaatgtctatggtggaccaacattatagatag-tccaccatagaccttattaa 9662169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 45 - 198
Target Start/End: Complemental strand, 20336640 - 20336488
Alignment:
Q  45 aaatgtctatggtggaccaacattatagatagttccaccgtagaccctattaannnnnnnaatttaaaccattcgatttattttttaaaaagagaactgt 144  Q
    ||||||||||| ||||||||||||||||||||| ||||| |||||| ||||||       |||||||||||||| ||||||||||| |||||||||| ||    
T  20336640 aaatgtctatgttggaccaacattatagatagt-ccaccatagaccttattaatttatttaatttaaaccattcaatttatttttttaaaagagaaccgt 20336542  T
Q  145 tagatcatgaaggtcaattgtatgttacagtataccatcaacaactaatatttt 198  Q
    | ||||| ||||||| ||||||| ||||| ||||||||||| | ||||||||||    
T  20336541 tggatcacgaaggtccattgtatattacaatataccatcaatagctaatatttt 20336488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 48 - 200
Target Start/End: Original strand, 20286685 - 20286839
Alignment:
Q  48 tgtctatggtggaccaacattatagatagttccaccgtagaccctattaannnnnnnaatttaaaccattcgatttatttttt---aaaaagagaactgt 144  Q
    |||||||||||||||||||||||||||||| ||||| |||||| ||||||       |||||||| |||||||||||||||||   ||||||||||| ||    
T  20286685 tgtctatggtggaccaacattatagatagt-ccaccatagaccttattaatttatttaatttaaatcattcgatttatttttttataaaaagagaaccgt 20286783  T
Q  145 tagatcatgaaggtcaattgtatgttacagtataccatcaacaactaatatttttc 200  Q
    ||||||||||||||  ||||||||||| ||||||| || ||||  |||| ||||||    
T  20286784 tagatcatgaaggtatattgtatgttatagtatacaattaacacttaatttttttc 20286839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 45 - 182
Target Start/End: Complemental strand, 20314747 - 20314611
Alignment:
Q  45 aaatgtctatggtggaccaacattatagatagttccaccgtagaccctattaannnnnnnaatttaaaccattcgatttattttttaaaaagagaactgt 144  Q
    ||||||||||| | ||||||||||||||||||| ||||| |||||| ||||||       ||||||||||||| |||||||||||| ||||||| || ||    
T  20314747 aaatgtctatgttagaccaacattatagatagt-ccaccatagaccttattaatttatttaatttaaaccatttgatttattttttcaaaagaggaccgt 20314649  T
Q  145 tagatcatgaaggtcaattgtatgttacagtataccat 182  Q
    | ||||||||||||| ||||||| ||||| ||||||||    
T  20314648 tggatcatgaaggtccattgtatattacaatataccat 20314611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 45 - 198
Target Start/End: Original strand, 36175395 - 36175547
Alignment:
Q  45 aaatgtctatggtggaccaacattatagatagttccaccgtagaccctattaannnnnnnaatttaaaccattcgatttattttttaaaaagagaactgt 144  Q
    ||||||||||| |||| |||||||||| ||||| ||||| || | ||||||||       ||||||||||||||||||| ||||| |||||||  | |||    
T  36175395 aaatgtctatgatggatcaacattatatatagt-ccaccatatatcctattaatttctttaatttaaaccattcgatttttttttaaaaaagatgagtgt 36175493  T
Q  145 tagatcatgaaggtcaattgtatgttacagtataccatcaacaactaatatttt 198  Q
    | ||||||||||||| ||| ||||||||||||||||||||| | ||| ||||||    
T  36175494 tggatcatgaaggtccattatatgttacagtataccatcaatagctactatttt 36175547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 198
Target Start/End: Complemental strand, 20288207 - 20288055
Alignment:
Q  45 aaatgtctatggtggaccaacattatagatagttccaccgtagaccctattaannnnnnnaatttaaaccattcgatttattttttaaaaagagaactgt 144  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||| ||||||       |||||||||||||   |||||||||||||||||| || ||    
T  20288207 aaatgtctatggtggaccaacattatagata-ttccaccatagaccttattaatttatttaatttaaaccatttagtttattttttaaaaagaggaccgt 20288109  T
Q  145 tagatcatgaaggtcaattgtatgttacagtataccatcaacaactaatatttt 198  Q
    | ||| |  |||||| |||| || ||||| | ||||||||| |||| |||||||    
T  20288108 tggataaacaaggtccattggatattacaatctaccatcaataacttatatttt 20288055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 168
Target Start/End: Original strand, 20335384 - 20335501
Alignment:
Q  48 tgtctatggtggaccaacattatagatagttccaccgtagaccctattaannnnnnnaatttaaaccattcgatttattttttaaaaagagaactgttag 147  Q
    ||||||||||||||||||||||||||||| |||||| |||||| ||||||       |||||||||||||| |||   ||||||||||||| || ||| |    
T  20335384 tgtctatggtggaccaacattatagatag-tccaccatagaccttattaatttatttaatttaaaccattcaatt--ctttttaaaaagaggaccgttgg 20335480  T
Q  148 atcatgaaggtcaattgtatg 168  Q
    |||||||||||  ||||||||    
T  20335481 atcatgaaggttcattgtatg 20335501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 168
Target Start/End: Original strand, 20313514 - 20313631
Alignment:
Q  48 tgtctatggtggaccaacattatagatagttccaccgtagaccctattaannnnnnnaatttaaaccattcgatttattttttaaaaagagaactgttag 147  Q
    |||||||||| |||||||||||||||||||| |||| |||||| ||||||       |||||||||||||| |||   ||||||||||||| || ||| |    
T  20313514 tgtctatggtcgaccaacattatagatagtt-caccatagaccttattaatttatttaatttaaaccattcaatt--ctttttaaaaagaggaccgttgg 20313610  T
Q  148 atcatgaaggtcaattgtatg 168  Q
    |||||||||||  ||||||||    
T  20313611 atcatgaaggttcattgtatg 20313631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 40364445 - 40364503
Alignment:
Q  38 taaccttaaatgtctatggtggaccaacattatagatagttccaccgtagaccctattaa 97  Q
    |||||| |||||||||||||| ||||||||||||||||| |||||| |||||||||||||    
T  40364445 taacctaaaatgtctatggtgaaccaacattatagatag-tccaccatagaccctattaa 40364503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 48083419 - 48083481
Alignment:
Q  105 aatttaaaccattcgatttattttttaaaaagagaactgttagatcatgaaggtcaattgtat 167  Q
    ||||||||||||||||| ||| |||||||| ||| |||||| ||||||||||||| |||||||    
T  48083419 aatttaaaccattcgatctatattttaaaatgaggactgttggatcatgaaggtccattgtat 48083481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 18442381 - 18442432
Alignment:
Q  45 aaatgtctatggtggaccaacattatagatagttccaccgtagaccctattaa 97  Q
    |||||||||||||||||||||||||| ||||| |||||| |||||| ||||||    
T  18442381 aaatgtctatggtggaccaacattatcgatag-tccaccatagaccttattaa 18442432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 19487455 - 19487506
Alignment:
Q  45 aaatgtctatggtggaccaacattatagatagttccaccgtagaccctattaa 97  Q
    |||||||||||||||||||||||||| ||||| |||||| |||||| ||||||    
T  19487455 aaatgtctatggtggaccaacattatcgatag-tccaccatagaccttattaa 19487506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 21074263 - 21074212
Alignment:
Q  45 aaatgtctatggtggaccaacattatagatagttccaccgtagaccctattaa 97  Q
    |||||| ||||||||||||||||||||||||| |||||| |||||| ||||||    
T  21074263 aaatgtatatggtggaccaacattatagatag-tccaccatagaccttattaa 21074212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 53624345 - 53624294
Alignment:
Q  45 aaatgtctatggtggaccaacattatagatagttccaccgtagaccctattaa 97  Q
    |||||| ||||||||||||||||||||||||| |||||| |||||| ||||||    
T  53624345 aaatgtatatggtggaccaacattatagatag-tccaccatagaccttattaa 53624294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 45 - 198
Target Start/End: Original strand, 42871227 - 42871379
Alignment:
Q  45 aaatgtctatggtggaccaacattatagatagttccaccgtagaccctattaannnnnnnaatttaaaccattcgatttattttttaaaaagagaactgt 144  Q
    ||||||||| |||||| |||||||||| ||||| |||||||||||||||||||       ||||||||| |||||||||||||||||||||| | | |||    
T  42871227 aaatgtctacggtggatcaacattatatatagt-ccaccgtagaccctattaatttctttaatttaaactattcgatttattttttaaaaaggggagtgt 42871325  T
Q  145 tagatcatgaaggtcaattgtatgttacagtataccatcaacaactaatatttt 198  Q
    ||||||||||| ||| ||| |||||||  |||||||||||| ||||| ||||||    
T  42871326 tagatcatgaatgtccattatatgttatggtataccatcaataactactatttt 42871379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 105 - 190
Target Start/End: Original strand, 31967267 - 31967352
Alignment:
Q  105 aatttaaaccattcgatttattttttaaaaagagaactgttagatcatgaaggtcaattgtatgttacagtataccatcaacaact 190  Q
    ||||||||||||| |||||||||||||||||||| |  ||| ||||| ||||||| ||||||||||| |||| |||||||| ||||    
T  31967267 aatttaaaccatttgatttattttttaaaaagaggagcgttggatcaagaaggtccattgtatgttatagtacaccatcaataact 31967352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 13533244 - 13533193
Alignment:
Q  45 aaatgtctatggtggaccaacattatagatagttccaccgtagaccctattaa 97  Q
    |||||||||||||||||||||||||||||||| |||||| |||||| ||||||    
T  13533244 aaatgtctatggtggaccaacattatagatag-tccaccatagaccttattaa 13533193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 34438529 - 34438587
Alignment:
Q  38 taaccttaaatgtctatggtggaccaacattatagatagttccaccgtagaccctattaa 97  Q
    |||||| ||||||||||||||||| |||||||||||||| |||||| |||||| ||||||    
T  34438529 taacctcaaatgtctatggtggactaacattatagatag-tccaccatagaccttattaa 34438587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 10168765 - 10168714
Alignment:
Q  45 aaatgtctatggtggaccaacattatagatagttccaccgtagaccctattaa 97  Q
    |||||||||||||||||||||||||||||| | ||||||||| ||| ||||||    
T  10168765 aaatgtctatggtggaccaacattatagat-ggtccaccgtacaccttattaa 10168714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 14524350 - 14524394
Alignment:
Q  45 aaatgtctatggtggaccaacattatagatagttccaccgtagacc 90  Q
    |||| ||||||||||||||||||||||||||| |||||| ||||||    
T  14524350 aaatatctatggtggaccaacattatagatag-tccaccatagacc 14524394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 44503669 - 44503618
Alignment:
Q  38 taaccttaaatgtctatggtggaccaacattatagatagttccaccgtagacc 90  Q
    ||||| ||||||||||||||| ||||||||| ||||| | |||||||||||||    
T  44503669 taaccctaaatgtctatggtgaaccaacattgtagat-ggtccaccgtagacc 44503618  T

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Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 45 - 198
Target Start/End: Complemental strand, 26697816 - 26697664
Alignment:
Q  45 aaatgtctatggtggaccaacattatagatagttccaccgtagaccctattaannnnnnnaatttaaaccattcgatttattttttaaaaagagaactgt 144  Q
    |||||| |||||||||||||||||||| ||||| ||||| ||||||||| |||       |||||| ||||||||||||||||||||||||||| | |||    
T  26697816 aaatgtttatggtggaccaacattatatatagt-ccaccatagaccctagtaatttctttaatttataccattcgatttattttttaaaaagaggagtgt 26697718  T
Q  145 tagatcatgaaggtcaattgtatgttacagtataccatcaacaactaatatttt 198  Q
    | ||||| |||||||  || |||||||||||||| |||||| | ||| ||||||    
T  26697717 tggatcacgaaggtccgttatatgttacagtatatcatcaatagctactatttt 26697664  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 19915172 - 19915222
Alignment:
Q  151 atgaaggtcaattgtatgttacagtataccatcaacaactaatatttttcc 201  Q
    ||||||||| ||||||||||||| || |||||||| | |||||||||||||    
T  19915172 atgaaggtccattgtatgttacaatagaccatcaatagctaatatttttcc 19915222  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 134
Target Start/End: Complemental strand, 9854862 - 9854774
Alignment:
Q  45 aaatgtctatggtggaccaacattatagatagttccaccgtagaccctattaannnnnnnaatttaaaccattcgatttattttttaaaa 134  Q
    ||||||||||||||||||||| ||| |||  | |||||| |||| ||||||||       ||||||||||||| ||||| ||||||||||    
T  9854862 aaatgtctatggtggaccaacttta-agagtggtccaccatagatcctattaattcttctaatttaaaccatttgattttttttttaaaa 9854774  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 30674022 - 30673955
Alignment:
Q  105 aatttaaaccattcgatttattttttaaaaagagaactgttagatcatgaaggtcaattgtatgttaca 173  Q
    ||||| ||||||||||||| ||| | |||||| ||  |||||||||||||||||| ||||||| |||||    
T  30674022 aattttaaccattcgatttttttatcaaaaagtgat-tgttagatcatgaaggtccattgtatcttaca 30673955  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 38696997 - 38696946
Alignment:
Q  38 taaccttaaatgtctatggtggaccaacattatagatagttccaccgtagacc 90  Q
    |||||| |||| ||||| ||||||||||||||||||||| |||||| ||||||    
T  38696997 taacctcaaatttctattgtggaccaacattatagatag-tccaccatagacc 38696946  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 198
Target Start/End: Original strand, 44276312 - 44276406
Alignment:
Q  105 aatttaaaccattcgattta-ttttttaaaaagagaactgttagatcatgaaggtcaattgtatgttacagtataccatcaacaactaatatttt 198  Q
    |||||||||||||||||||| |||||||||||||  |  ||| ||| ||||||||| ||| |||||||| |||||||||||| ||||| ||||||    
T  44276312 aatttaaaccattcgatttaattttttaaaaagatgagcgttggattatgaaggtccattatatgttacggtataccatcaataactactatttt 44276406  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 19466198 - 19466140
Alignment:
Q  38 taaccttaaatgtctatggtggaccaacattatagatagttccaccgtagaccctattaa 97  Q
    |||||| ||||||||||||||||| |||||||||||||| |||||| |||||| ||||||    
T  19466198 taacctcaaatgtctatggtggactaacattatagatag-tccaccatagaccttattaa 19466140  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 36509934 - 36509992
Alignment:
Q  38 taaccttaaatgtctatggtggaccaacattatagatagttccaccgtagaccctattaa 97  Q
    |||||| ||||||||||||||||| ||||||||||||| ||||||| |||||| ||||||    
T  36509934 taacctcaaatgtctatggtggactaacattatagata-ttccaccatagaccttattaa 36509992  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 30535652 - 30535603
Alignment:
Q  45 aaatgtctatggtggaccaacattatagatagttccaccgtagaccctatt 95  Q
    |||||||||||||||||||||||||||||||| |||||| |||||| ||||    
T  30535652 aaatgtctatggtggaccaacattatagatag-tccaccatagaccttatt 30535603  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 7161306 - 7161262
Alignment:
Q  45 aaatgtctatggtggaccaacattatagatagttccaccgtagacc 90  Q
    |||||||||| ||||||||||||||||||||| |||||| ||||||    
T  7161306 aaatgtctattgtggaccaacattatagatag-tccaccatagacc 7161262  T

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Target: scaffold0128 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 45 - 198
Target Start/End: Original strand, 22113 - 22266
Alignment:
Q  45 aaatgtctatggtggaccaacattatagatagttccaccgtagaccctattaannnnnnnaatttaaaccattcgatttatttttta-aaaagagaactg 143  Q
    ||||| |||||||||||||||||| ||| | || ||||| |||||||||||||       ||||||||||||| ||||||||||||  ||||| | |  |    
T  22113 aaatgcctatggtggaccaacattgtaggtggt-ccaccatagaccctattaatttctttaatttaaaccatttgatttattttttttaaaagtggatcg 22211  T
Q  144 ttagatcatgaaggtcaattgtatgttacagtataccatcaacaactaatatttt 198  Q
    || ||||||||||||| ||||||||||| | || |||||||| | | ||||||||    
T  22212 ttggatcatgaaggtccattgtatgttataataaaccatcaatagccaatatttt 22266  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 28562786 - 28562742
Alignment:
Q  52 tatggtggaccaacattatagatagttccaccgtagaccctattaa 97  Q
    ||||||||||||||||||||||||| |||||| |||||| ||||||    
T  28562786 tatggtggaccaacattatagatag-tccaccatagaccttattaa 28562742  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 44192431 - 44192381
Alignment:
Q  45 aaatgtctatggtggaccaacattatagatagttccaccgtagaccctattaa 97  Q
    |||||||||| ||||||||||||||||||||||  ||| ||||||| ||||||    
T  44192431 aaatgtctattgtggaccaacattatagatagt--cacggtagaccttattaa 44192381  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 2277452 - 2277401
Alignment:
Q  45 aaatgtctatggtggaccaacattatagatagttccaccgtagaccctattaa 97  Q
    |||||||||||||||||||||||  ||||||| |||||| |||||| ||||||    
T  2277452 aaatgtctatggtggaccaacatggtagatag-tccaccatagaccttattaa 2277401  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 34147269 - 34147320
Alignment:
Q  45 aaatgtctatggtggaccaacattatagatagttccaccgtagaccctattaa 97  Q
    |||||||||||||||||||||||  ||||||| |||||| |||||| ||||||    
T  34147269 aaatgtctatggtggaccaacatggtagatag-tccaccatagaccttattaa 34147320  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 32757958 - 32758009
Alignment:
Q  45 aaatgtctatggtggaccaacattatagatagttccaccgtagaccctattaa 97  Q
    |||||||||||||||||||||||  ||||||| |||||| |||||| ||||||    
T  32757958 aaatgtctatggtggaccaacatggtagatag-tccaccatagaccttattaa 32758009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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