View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9169_low_47 (Length: 282)
Name: NF9169_low_47
Description: NF9169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9169_low_47 |
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| [»] scaffold0690 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: scaffold0690 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: scaffold0690
Description:
Target: scaffold0690; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 913 - 649
Alignment:
| Q |
18 |
aattcaacgacatcatcgtaaaatcctgcgatataaattggacaagaaatcatatcctgctgcgaatagacccttctaagataacgctgccctagtgaag |
117 |
Q |
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| T |
913 |
aattcaacgacatcatcgtaaaatcctgcaatataaattggacaagaaatcatatcctgctgcgaatggacccttctaagataacgctgccctagcgaag |
814 |
T |
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| Q |
118 |
aacaatcaaagaaactaatatgggtaaactcattgtatagcacaggaaacctagaaccatcaataatccgaaaaggaaaaattgatgaagagaaattggg |
217 |
Q |
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| T |
813 |
aacaatcaaagaaactaatatgggtaaactcattgtatagcacaggaaacctagaaccatcaataatccgaaaaggaaaaattgatgaagagaaattggg |
714 |
T |
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| Q |
218 |
ctgaagtaagagtcgtggaaaacagtgttcgggatcacgtgcttccaacacctgcgatgtgtagt |
282 |
Q |
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| T |
713 |
ctgaagtaagagtcgtggaaaacagtgttcgggatcgcgtgcttccaatacttgcgatgtgtagt |
649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 15911192 - 15911456
Alignment:
| Q |
18 |
aattcaacgacatcatcgtaaaatcctgcgatataaattggacaagaaatcatatcctgctgcgaatagacccttctaagataacgctgccctagtgaag |
117 |
Q |
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| T |
15911192 |
aattcaacgacatcatcgtaaaatcctgcaatataaattggacaagaaatcatatcctgctgcgaatggacccatctaagataacgctgccctagagaag |
15911291 |
T |
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| Q |
118 |
aacaatcaaagaaactaatatgggtaaactcattgtatagcacaggaaacctagaaccatcaataatccgaaaaggaaaaattgatgaagagaaattggg |
217 |
Q |
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| T |
15911292 |
aacaatcaaagaaactaatatgggtaaactcattgtatagcacaggaaacctagaaccatcaataatccgaaaaggaaaaattgatgaagagaaattggg |
15911391 |
T |
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| Q |
218 |
ctgaagtaagagtcgtggaaaacagtgttcgggatcacgtgcttccaacacctgcgatgtgtagt |
282 |
Q |
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| T |
15911392 |
ctgaagtaagagtcgtggaaaacagtgttcgggatcacgtgcttccaatacatgcgatgtgtagt |
15911456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 6e-43; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 111 - 282
Target Start/End: Complemental strand, 9336735 - 9336561
Alignment:
| Q |
111 |
agtgaagaacaatcaaagaaactaatatgggtaaactcattgtatagcacaggaaacctagaaccatcaataatccgaaaaggaaaaattgatgaagaga |
210 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| || ||| ||||||||||||||||||||||||||| |||||||||| || |
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| T |
9336735 |
agtgaagaacaatcaaagaaactaatattggtaaactcattgtatagcggtggcaactcagaaccatcaataatccgaaaaggaaatattgatgaagtga |
9336636 |
T |
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| Q |
211 |
aattgggctgaagt---aagagtcgtggaaaacagtgttcgggatcacgtgcttccaacacctgcgatgtgtagt |
282 |
Q |
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| T |
9336635 |
aattggactgaagtaacaagagtcgtggaagacaattttcaggatcacttgcttctaatacttgcgatgtgtagt |
9336561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 111 - 282
Target Start/End: Complemental strand, 9363642 - 9363468
Alignment:
| Q |
111 |
agtgaagaacaatcaaagaaactaatatgggtaaactcattgtatagcacaggaaacctagaaccatcaataatccgaaaaggaaaaattgatgaagaga |
210 |
Q |
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| T |
9363642 |
agtgaagaacaatcaaagaaactaatattggtaaactcattgtatatcggtggtaactcagaaccatcaataatccgaaaaggaaatattgatgaagtga |
9363543 |
T |
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| Q |
211 |
aattgggctgaagt---aagagtcgtggaaaacagtgttcgggatcacgtgcttccaacacctgcgatgtgtagt |
282 |
Q |
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| T |
9363542 |
aatctgactgaagtaacaagagtcgtggaagacaattttcaggatcacttgcttctaatacttgcgatgtgtagt |
9363468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 179 - 282
Target Start/End: Original strand, 9243484 - 9243590
Alignment:
| Q |
179 |
aataatccgaaaaggaaaaattgatgaagagaaattgg---gctgaagtaagagtcgtggaaaacagtgttcgggatcacgtgcttccaacacctgcgat |
275 |
Q |
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|||||||||||||||||| |||||||||| |||||||| | |||||||||||||||||| ||| | ||| |||||||||||||| || || |||||| |
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| T |
9243484 |
aataatccgaaaaggaaatattgatgaagtgaaattggagtgaagaagtaagagtcgtggaagacaattttcaggatcacgtgcttctaatacttgcgat |
9243583 |
T |
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| Q |
276 |
gtgtagt |
282 |
Q |
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| T |
9243584 |
gtgtagt |
9243590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 9363735 - 9363688
Alignment:
| Q |
33 |
tcgtaaaatcctgcgatataaattggacaagaaatcatatcctgctgc |
80 |
Q |
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| T |
9363735 |
tcgtcaaatgctgccatataaattggacaagaaatcatgtcctgctgc |
9363688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 9243355 - 9243397
Alignment:
| Q |
38 |
aaatcctgcgatataaattggacaagaaatcatatcctgctgc |
80 |
Q |
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| T |
9243355 |
aaatgctgccatataaattggacaagaaatcatgtcctgctgc |
9243397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 138
Target Start/End: Original strand, 9243440 - 9243470
Alignment:
| Q |
108 |
cctagtgaagaacaatcaaagaaactaatat |
138 |
Q |
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| T |
9243440 |
cctagtgaagaacaatcaaagaaactaatat |
9243470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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