View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9169_low_6 (Length: 635)

Name: NF9169_low_6
Description: NF9169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9169_low_6
NF9169_low_6
[»] chr1 (1 HSPs)
chr1 (13-627)||(39991314-39991927)
[»] chr7 (3 HSPs)
chr7 (209-338)||(43876160-43876289)
chr7 (209-337)||(31295764-31295893)
chr7 (16-123)||(43876375-43876482)
[»] chr2 (1 HSPs)
chr2 (267-322)||(36406405-36406460)


Alignment Details
Target: chr1 (Bit Score: 591; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 13 - 627
Target Start/End: Original strand, 39991314 - 39991927
Alignment:
Q  13 tggacatcaatgtcatctggcacaattccactattcaactggttcctcacatgctcctccttactattttccgggtttatgcggaatataccttcagcct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39991314 tggacatcaatgtcatctggcacaattccactattcaactggttcctcacatgctcctccttactattttccgggtttatgcggaatataccttcagcct 39991413  T
Q  113 gaaatttcattgaaatgagaaatcaaattagcctcaaatgactactcactagacattaataatgttacaaaatgacaaaatatatcataaactcagtacc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39991414 gaaatttcattgaaatgagaaatcaaattagcctcaaatgactactcactagacattaataatgttacaaaatgacaaaatatatcataaactcggtacc 39991513  T
Q  213 tttaatcctccctgtgaatataaacggtcctgcattagcatgagaatagtagggacactgtttccttttgaatcataagaacactgcatggattctgctg 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39991514 tttaatcctccctgtgaatataaacggtcctgcattagcatgagaatagtagggacactgtttccttttgaatcataagaacactgcatggattctgctg 39991613  T
Q  313 acactccaaacacacttacactgcaagcatggatgacagcaatttgcaagtcagaaagatgaaacaataacggtcaaagacaaaaaacgctatgaagaat 412  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39991614 acactccaaacacacttacactgcaagcatagatgacagcaatttgcaagtcagaaagatgaaacaataacggtcaaagacaaaaaacgctatgaagaat 39991713  T
Q  413 agacagacacaacaccaacaccaacatgtaaacattggtaacaatttgaggaaatttaattggttgaaaatgatcaaatgtgttggtgtccgacatcaac 512  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  39991714 agacagacacaacaccgacaccaacatgtaaacattggtaacaatttgaggaaatttaattggttgaaaatgat-aaatgtgttggtgtccgacatcgac 39991812  T
Q  513 atctattggacaccagacatacattcgatctgcagtactgcatatcaaatgtgctctagcatcaaataagggattaagtttagaaaacattatgtcatat 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39991813 atctattggacaccagacatacattcgatctgcagtactgcatatcaaatgtgctctagcatcaaataagggattaagtttagaaaacattatgtcatat 39991912  T
Q  613 cctcaaatatctctc 627  Q
    |||||||||||||||    
T  39991913 cctcaaatatctctc 39991927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 209 - 338
Target Start/End: Complemental strand, 43876289 - 43876160
Alignment:
Q  209 tacctttaatcctccctgtgaatataaacggtcctgcattagcatgagaatagtagggacactgtttccttttgaatcataagaacactgcatggattct 308  Q
    ||||||||||||||||||||| ||||| |  |||||||| || |  |||||||| |||||||||||||||||||||||||||||||| ||||| ||||||    
T  43876289 tacctttaatcctccctgtgagtataacctctcctgcatcagtaacagaatagtggggacactgtttccttttgaatcataagaacattgcattgattct 43876190  T
Q  309 gctgacactccaaacacacttacactgcaa 338  Q
    ||||| || ||||||||||| |||||||||    
T  43876189 gctgagacaccaaacacactaacactgcaa 43876160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 209 - 337
Target Start/End: Complemental strand, 31295893 - 31295764
Alignment:
Q  209 tacctttaatcctccc-tgtgaatataaacggtcctgcattagcatgagaatagtagggacactgtttccttttgaatcataagaacactgcatggattc 307  Q
    |||||||| ||||||| ||||| ||||| |  |||||||| || |  |||||||  |||||||||||||||||||||||||||||||| ||||| |||||    
T  31295893 tacctttagtcctcccctgtgagtataacctctcctgcatcagtaacagaatagcggggacactgtttccttttgaatcataagaacattgcattgattc 31295794  T
Q  308 tgctgacactccaaacacacttacactgca 337  Q
    | |||| || ||||||||||| ||||||||    
T  31295793 tactgagacaccaaacacactaacactgca 31295764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 43876482 - 43876375
Alignment:
Q  16 acatcaatgtcatctggcacaattccactattcaactggttcctcacatgctcctccttactattttccgggtttatgcggaatataccttcagcctgaa 115  Q
    ||||||||||||| ||||||||| ||||||||||| || | ||||| ||| ||||| |  | |||||| || ||||| || ||||| |||||||||||||    
T  43876482 acatcaatgtcatttggcacaatgccactattcaattgctccctcaaatgttcctcttcgccattttctggatttatacgaaatattccttcagcctgaa 43876383  T
Q  116 atttcatt 123  Q
    | ||||||    
T  43876382 aattcatt 43876375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 322
Target Start/End: Complemental strand, 36406460 - 36406405
Alignment:
Q  267 acactgtttccttttgaatcataagaacactgcatggattctgctgacactccaaa 322  Q
    |||||||| ||| |||||||||||||  ||||||||||||||| ||| ||||||||    
T  36406460 acactgttccctcttgaatcataagataactgcatggattctgttgaaactccaaa 36406405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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