View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9169_low_68 (Length: 230)
Name: NF9169_low_68
Description: NF9169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9169_low_68 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 48833785 - 48833999
Alignment:
| Q |
1 |
taggatttgatgtacgagctggtgttataatatcattggcttcaacctacgatctagagaagcacaaatctcgtagagtattatacaaaggatacatttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48833785 |
taggatttgatgtacgagctggtgttataatatcattggcatcaacctacgatctagagaagcacaaatctcgtagagtattatacaaaggatacatttc |
48833884 |
T |
|
| Q |
101 |
tgaactttttgtgccataccaagatccatctgatgaattttactttaagactttctttgatgctggagagtttggatttggtttgtcaacggtgtctttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
48833885 |
tgaactttttgtgccataccaagatccatctgatgaattttactttaagactttctttgatgctggagagtttgaatttggtttgtcaacggtgtctttg |
48833984 |
T |
|
| Q |
201 |
atacctaatcgtgat |
215 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
48833985 |
atacctaatcctgat |
48833999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 48790412 - 48790198
Alignment:
| Q |
1 |
taggatttgatgtacgagctggtgttataatatcattggcttcaacctacgatctagagaagcacaaatctcgtagagtattatacaaaggatacatttc |
100 |
Q |
| |
|
||||||||||||||||||||||| || ||||||| | || || | || |||||||||||||||| || ||||||||||||||||||||| |||||||| |
|
|
| T |
48790412 |
taggatttgatgtacgagctggtattgtaatatcccttgcatctatttatgatctagagaagcacatatatcgtagagtattatacaaagggtacatttc |
48790313 |
T |
|
| Q |
101 |
tgaactttttgtgccataccaagatccatctgatgaattttactttaagactttctttgatgctggagagtttggatttggtttgtcaacggtgtctttg |
200 |
Q |
| |
|
||| | ||||||||||||||||||||| | || ||||||||||||||||| || || ||| |||| ||||||||||||||| | || || ||||||||| |
|
|
| T |
48790312 |
tgagttgtttgtgccataccaagatccaacagaagaattttactttaagacatttttcgattctggtgagtttggatttggtctatcgactgtgtctttg |
48790213 |
T |
|
| Q |
201 |
atacctaatcgtgat |
215 |
Q |
| |
|
||||| || |||||| |
|
|
| T |
48790212 |
atacccaaccgtgat |
48790198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 15825943 - 15825730
Alignment:
| Q |
1 |
taggatttgatgtacgagctggtgttataatatcattggcttcaacctacgatctagagaagcacaaatctcgtagagtattatacaaaggatacatttc |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| | || || | ||||| || || || ||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
15825943 |
taggatttgatgtacgagctggtattataatatcacttgcatctatttacgaccttgaaaaacacaaatctcgtagagtattatacaaagggtatatttc |
15825844 |
T |
|
| Q |
101 |
tgaactttttgtgccataccaagatccatctgatgaattttactttaagactttctttgatgctggagagtttggatttggtttgtcaacggtgtctttg |
200 |
Q |
| |
|
||| | ||||||||||||||||||||| | || || |||||||||||||| || || ||||||||||||| |||||||||| || || || |||||| |
|
|
| T |
15825843 |
tgagttgtttgtgccataccaagatccaacagaagagttttactttaagacatttttcgatgctggagagtatggatttggtcgatctactgtttctttg |
15825744 |
T |
|
| Q |
201 |
atacctaatcgtga |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
15825743 |
atacctaatcgtga |
15825730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 48816713 - 48816499
Alignment:
| Q |
1 |
taggatttgatgtacgagctggtgttataatatcattggcttcaacctacgatctagagaagcacaaatctcgtagagtattatacaaaggatacatttc |
100 |
Q |
| |
|
||||||||||||||||||||||| | | |||||| | || || | |||||||||||||| || || ||||| | ||| | |||||||| |||||||| |
|
|
| T |
48816713 |
taggatttgatgtacgagctggtatagtgatatcacttgcatctatttacgatctagagaaacataagtctcgccgtgtactctacaaaggctacatttc |
48816614 |
T |
|
| Q |
101 |
tgaactttttgtgccataccaagatccatctgatgaattttactttaagactttctttgatgctggagagtttggatttggtttgtcaacggtgtctttg |
200 |
Q |
| |
|
|| || |||||||| || ||||| ||| | || || |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
48816613 |
cgagctatttgtgccttatcaagacccaaccgaagagttttactttaagactttctttgattctggagagtttggatttggtctgtcaacggtgtctttg |
48816514 |
T |
|
| Q |
201 |
atacctaatcgtgat |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
48816513 |
atacctaatcgtgat |
48816499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 48 - 215
Target Start/End: Complemental strand, 48808106 - 48807940
Alignment:
| Q |
48 |
tacgatctagagaagcacaaatctcgtagagtattatacaaaggatacatttctgaactttttgtgccataccaagatccatctgatgaattttacttta |
147 |
Q |
| |
|
|||||| ||||||| ||||| | |||| | ||| | ||||||| |||||||| || || |||||||| || ||||| ||| | || ||||||||||||| |
|
|
| T |
48808106 |
tacgatatagagaaacacaagtttcgtcgtgtactctacaaagc-tacatttccgagctatttgtgccttatcaagacccaaccgaagaattttacttta |
48808008 |
T |
|
| Q |
148 |
agactttctttgatgctggagagtttggatttggtttgtcaacggtgtctttgatacctaatcgtgat |
215 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
48808007 |
agactttctttgattctggagagtttggatttgccctgtcaacggtgtctttgatacctaatcgtgat |
48807940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University