View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9169_low_71 (Length: 228)
Name: NF9169_low_71
Description: NF9169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9169_low_71 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 28735432 - 28735645
Alignment:
| Q |
1 |
ttaaatctggttcaggacaagcaggatagtaatgaccaagtaatatgttcccttcacaacaatctaagtcctttaaatggtttgaatgcaatccaagagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28735432 |
ttaaatctggttcaggacaagcaggatagtaatgaccaagtaatatgttcccttcacaacaatctaagtcctttaaatggtttgaatgcaatccaagagc |
28735531 |
T |
|
| Q |
101 |
ttctgatagtaattcaaagagtattgttccaagtttcattagacgtgttccatattccataagtatatccctacaagaatatgaaatcaccaagcaataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28735532 |
ttctgatagtaattcaaagagtattgttccaagtttcattagacgtgttccatattccataagtatatccctacaagaatatgaaatcaccaagcaataa |
28735631 |
T |
|
| Q |
201 |
attaagttccctat |
214 |
Q |
| |
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|||||||||||||| |
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| T |
28735632 |
attaagttccctat |
28735645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 28700431 - 28700644
Alignment:
| Q |
1 |
ttaaatctggttcaggacaagcaggatagtaatgaccaagtaatatgttcccttcacaacaatctaagtcctttaaatggtttgaatgcaatccaagagc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || || ||||| ||||||||||| |||||||| |||||||||| ||||||||||||||| |
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| T |
28700431 |
ttaaatctggttcaggacaagcaggatagtaatgaccaattatcatattcccctcacaacaatccaagtccttcaaatggtttggatgcaatccaagagc |
28700530 |
T |
|
| Q |
101 |
ttctgatagtaattcaaagagtattgttccaagtttcattagacgtgttccatattccataagtatatccctacaagaatatgaaatcaccaagcaataa |
200 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28700531 |
ttctgatagtaattcaaagagtactcttccaagtttcattagacatgttccatattccataagtatatccctacaagaatatgaaatcaccaagcaataa |
28700630 |
T |
|
| Q |
201 |
attaagttccctat |
214 |
Q |
| |
|
|||| ||||||||| |
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| T |
28700631 |
attatgttccctat |
28700644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 28742514 - 28742711
Alignment:
| Q |
1 |
ttaaatctggttcaggacaagcaggatagtaatgaccaagtaatatgttcccttcacaacaatctaagtcctttaaatggtttgaatgcaatccaagagc |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| | |||||| | ||||| ||| ||||||||||||| ||||||||||||| |||||||||||| || |
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| T |
28742514 |
ttaaatgtggttcaggacaagcaggatagtaatggcaaagtaacaaattcccctcagaacaatctaagtcttttaaatggtttggatgcaatccaagtgc |
28742613 |
T |
|
| Q |
101 |
ttctgatagtaattcaaagagtattgttccaagtttcattagacgtgttccatattccataagtatatccctacaagaatatgaaatcaccaagcaat |
198 |
Q |
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||||||||||||||||||||||| ||||||||||||||| | || ||||||||||| || |||||| |||||| || |||||||||||||||||| |
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|
| T |
28742614 |
ttctgatagtaattcaaagagtacaattccaagtttcattacatgttctccatattccagaaatatatctctacaaaaagatgaaatcaccaagcaat |
28742711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 28783501 - 28783637
Alignment:
| Q |
1 |
ttaaatctggttcaggacaagcaggatagtaatgaccaagtaatatgttcccttcacaacaatctaagtcctttaaatggtttgaatgcaatccaagagc |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||| ||| |||| | | |||| | | ||| ||||||||||||| ||||||||||||||| |
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| T |
28783501 |
ttaattctggttcaggacaagcaggatagtaatgactaagtgatagaatccccttagcacaacccatgtcttttaaatggtttggatgcaatccaagagc |
28783600 |
T |
|
| Q |
101 |
ttctgatagtaattcaaagagtattgttccaagtttc |
137 |
Q |
| |
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|||||||||||||||||||||| | ||||||||||| |
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|
| T |
28783601 |
ttctgatagtaattcaaagagtgtcattccaagtttc |
28783637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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