View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9169_low_9 (Length: 549)
Name: NF9169_low_9
Description: NF9169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9169_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 4284328 - 4284670
Alignment:
| Q |
1 |
gataaggagagacctgatgagagaattgtgagaccgccattggtgtcttctagaagctctgtgattatgtgttcgtggaattgaagaaccattgatgaat |
100 |
Q |
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| T |
4284328 |
gataaggagagacctgatgagagaattgtgaggccgccattggtgtcttctagaagctctgtgattatgtgttcgtggaattgaagaaccattgatgaat |
4284427 |
T |
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| Q |
101 |
aataatggatgcaaattgaagaagttcgaatttgatttgattgttactgagnnnnnnntttaggtttggaactgcaaattctcgaaggaatgaagcattc |
200 |
Q |
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| T |
4284428 |
aataatggatgcaaattgaagaagttcgaatttgatttgattattactgag-aaaaaatttaggttttgaactgcaaattctcgaaggaatgaagcattc |
4284526 |
T |
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| Q |
201 |
caagtttcaactgtaaaaccagtgaaccgcgaaaatgtgaactgcgaaactgtgcccgcgaaattgtaaagaaacttgttattgggagtagtgctattag |
300 |
Q |
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| T |
4284527 |
caagtttcaactgcaaaaccagtgaaccgcgaaaatgtgaactgcgaaactgtgcccgcgaaattgtgaagaaacttgttatttggagtagtgctattag |
4284626 |
T |
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| Q |
301 |
tacactctttgttttgnnnnnnngctaatacaccttcttattgttgaaa |
349 |
Q |
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| T |
4284627 |
tacactctttttttt-----tttgctaatacaccttcttattgttgaaa |
4284670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 361 - 525
Target Start/End: Original strand, 4286173 - 4286337
Alignment:
| Q |
361 |
attcgtctgagaataatatacacctccatagagcattcaagttttttgataaaaatcaatctgggtatattgaacttgaggataattaagtaagctaact |
460 |
Q |
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| T |
4286173 |
attcatctgagaatgatatacacctccatagagcattcaagttttttgataaaaatcaatctcggtatattgaacttgaggataattaagtaagctaact |
4286272 |
T |
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| Q |
461 |
cttcatttaagacaagactctgttatcattcccttggcccatcatggcataaccttagcaaaaaa |
525 |
Q |
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| T |
4286273 |
cttcatttaagacaagactctgttatcattcccttggcccatcatggcataaccttagcaaaaaa |
4286337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 380 - 442
Target Start/End: Complemental strand, 21387211 - 21387149
Alignment:
| Q |
380 |
acacctccatagagcattcaagttttttgataaaaatcaatctgggtatattgaacttgagga |
442 |
Q |
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| T |
21387211 |
acacctccaaagagcattccaattttttgataaaaacgaatctgggtttattgaacttgagga |
21387149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 23429422 - 23429478
Alignment:
| Q |
38 |
cattggtgtcttctagaagctctgtgattatgtgttcgtggaattgaagaaccattg |
94 |
Q |
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| T |
23429422 |
cattggtgtcttctagaagttaagtgattatgtttgtgtggaattgaagaaccattg |
23429478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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