View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9170_high_12 (Length: 248)
Name: NF9170_high_12
Description: NF9170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9170_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 45185048 - 45185281
Alignment:
| Q |
1 |
gcataacgtaggctaaaccgtaagcatctcttatcggtcggtattacttattcccacacctagaggtacccattatcctcgcgagtcccttagagaggtg |
100 |
Q |
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||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45185048 |
gcataacgtaggctaaaccgtaagcatatgttatcggtcggaattacttattcccacacctagaggtacccattatcctcgcgagtcccttagagaggtg |
45185147 |
T |
|
| Q |
101 |
atagtcttaattagaagggagagggaccagacttggtgatgtgagtgcgagagggctggggacggtgcagacccaatgtaggggtagagacccacctact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45185148 |
atagtcttaattagaagggagagggaccagacttggtgatgtgagtgcgagagggctggggacggtgcagacccaatgtaggggtagagacccacctact |
45185247 |
T |
|
| Q |
201 |
gtcccaccaaccaggcaaaagaaaagcaaagttg |
234 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
45185248 |
gtcccaccaaccaggcaaaagaaaagcaaagttg |
45185281 |
T |
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