View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9170_low_1 (Length: 929)

Name: NF9170_low_1
Description: NF9170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9170_low_1
NF9170_low_1
[»] chr7 (6 HSPs)
chr7 (19-430)||(10206659-10207070)
chr7 (374-430)||(9456941-9456997)
chr7 (380-430)||(48644159-48644209)
chr7 (372-430)||(18535662-18535721)
chr7 (385-430)||(27258279-27258324)
chr7 (385-430)||(39703138-39703183)
[»] chr6 (21 HSPs)
chr6 (582-915)||(14606160-14606515)
chr6 (434-545)||(14606006-14606117)
chr6 (372-430)||(23094608-23094666)
chr6 (369-430)||(19382994-19383055)
chr6 (370-473)||(8848035-8848140)
chr6 (372-431)||(14603975-14604034)
chr6 (372-430)||(19214781-19214839)
chr6 (372-430)||(21393426-21393484)
chr6 (369-430)||(2666141-2666202)
chr6 (373-430)||(17724581-17724638)
chr6 (373-430)||(23160780-23160837)
chr6 (374-430)||(19002769-19002825)
chr6 (372-430)||(15907093-15907151)
chr6 (372-430)||(32616898-32616956)
chr6 (372-430)||(8909966-8910024)
chr6 (372-430)||(21683171-21683229)
chr6 (434-508)||(31872998-31873072)
chr6 (372-430)||(31877213-31877271)
chr6 (455-508)||(7463214-7463267)
chr6 (372-429)||(14603728-14603785)
chr6 (373-430)||(17102635-17102692)
[»] chr3 (16 HSPs)
chr3 (23-408)||(48119414-48119802)
chr3 (369-430)||(9767929-9767990)
chr3 (369-430)||(46124028-46124089)
chr3 (40-131)||(1137790-1137881)
chr3 (372-430)||(11028072-11028129)
chr3 (372-430)||(15212737-15212795)
chr3 (372-430)||(15251956-15252014)
chr3 (372-430)||(22155376-22155434)
chr3 (336-403)||(1136157-1136224)
chr3 (369-431)||(53157278-53157340)
chr3 (373-430)||(21972645-21972702)
chr3 (373-430)||(21995076-21995133)
chr3 (373-430)||(41935243-41935300)
chr3 (372-430)||(6079879-6079937)
chr3 (368-430)||(24552581-24552643)
chr3 (368-430)||(24558720-24558782)
[»] chr1 (10 HSPs)
chr1 (23-282)||(41475696-41475956)
chr1 (334-430)||(41476035-41476131)
chr1 (372-430)||(15723291-15723349)
chr1 (373-428)||(2248044-2248099)
chr1 (434-508)||(15847375-15847449)
chr1 (372-430)||(44201672-44201730)
chr1 (369-430)||(46123005-46123066)
chr1 (434-499)||(48278551-48278616)
chr1 (372-431)||(19193807-19193866)
chr1 (434-508)||(18509577-18509651)
[»] chr8 (9 HSPs)
chr8 (434-534)||(44970779-44970879)
chr8 (582-678)||(44970646-44970742)
chr8 (374-430)||(23120522-23120578)
chr8 (369-430)||(508262-508323)
chr8 (339-430)||(22216423-22216514)
chr8 (372-430)||(8223730-8223788)
chr8 (374-424)||(21349404-21349454)
chr8 (370-403)||(23126932-23126965)
chr8 (373-430)||(45537326-45537383)
[»] chr5 (10 HSPs)
chr5 (434-534)||(35332549-35332649)
chr5 (582-678)||(35332415-35332511)
chr5 (371-430)||(22362557-22362616)
chr5 (369-430)||(21112711-21112772)
chr5 (372-430)||(42883073-42883131)
chr5 (371-424)||(27032680-27032733)
chr5 (373-430)||(38925437-38925494)
chr5 (324-402)||(28256327-28256405)
chr5 (385-430)||(29391378-29391423)
chr5 (373-430)||(35328810-35328867)
[»] scaffold0553 (1 HSPs)
scaffold0553 (368-430)||(6549-6611)
[»] chr2 (7 HSPs)
chr2 (368-430)||(2707131-2707193)
chr2 (368-430)||(31898581-31898643)
chr2 (373-430)||(45073808-45073861)
chr2 (372-430)||(24863912-24863970)
chr2 (372-430)||(25417080-25417138)
chr2 (368-412)||(39907536-39907580)
chr2 (372-430)||(24079509-24079567)
[»] scaffold0072 (1 HSPs)
scaffold0072 (369-430)||(46284-46345)
[»] scaffold0337 (1 HSPs)
scaffold0337 (372-430)||(789-847)
[»] scaffold0281 (1 HSPs)
scaffold0281 (368-427)||(4583-4642)
[»] scaffold0077 (1 HSPs)
scaffold0077 (372-430)||(52538-52596)
[»] chr4 (6 HSPs)
chr4 (373-430)||(43593847-43593904)
chr4 (369-430)||(35577352-35577413)
chr4 (339-404)||(51033336-51033401)
chr4 (372-430)||(16612222-16612280)
chr4 (372-430)||(18811327-18811385)
chr4 (372-430)||(50377326-50377384)
[»] scaffold0164 (1 HSPs)
scaffold0164 (378-429)||(5207-5257)
[»] scaffold0179 (1 HSPs)
scaffold0179 (368-430)||(28438-28500)
[»] scaffold0039 (1 HSPs)
scaffold0039 (372-430)||(102232-102290)
[»] scaffold2142 (1 HSPs)
scaffold2142 (454-499)||(395-440)
[»] scaffold0086 (1 HSPs)
scaffold0086 (368-409)||(42469-42510)


Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-178; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 19 - 430
Target Start/End: Complemental strand, 10207070 - 10206659
Alignment:
Q  19 tgaatagatggagaaagaatgaagaatacaaagtgttgtgatgttcttcaccggctatcttttaatgtcttcccatttctcaaaatatttaagaatgaga 118  Q
    ||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10207070 tgaatagatgctgaaagaatgaagaatacaaaatgttgtgatgttcttcaccggctatcttttaatgtctttccatttctcaaaatatttaagaatgaga 10206971  T
Q  119 ctcaaacatacatccacaaagcacatgtttttaaatgtacgtttgatctatgatttatgttcataatttgaacaaacgatcgagtttattttggatgttg 218  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  10206970 ctcaaacatacatacacaaagcacatgtttttaaatgtacgtttgatctatgatttatgtacataatttgtacaaacgatcgagtttattttggatgttg 10206871  T
Q  219 taccaacaagtttttggctaataacctaaacacgtagcatatatttacatcttttagtttatcannnnnnnnnatccctatcaattgtgtaatttgtaga 318  Q
    ||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||         || |||||||||||||||||||||| |    
T  10206870 tacgaacaagtttttggctaataacctaaacacttaacatatatttacatcttttagtttatcatttttttttattcctatcaattgtgtaatttgtaaa 10206771  T
Q  319 tagttaaattcaaatcaaacttatataaagaaaaataatcaaatctacgcatacgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgt 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||  | ||    
T  10206770 tagttaaattcaaatcaaacttatataaagaaaaataatcaaatctacgcatacgttagcgcagtggaaaaagcggacagacgggcacggaagtgccggt 10206671  T
Q  419 ctggacgctagt 430  Q
    ||||||||||||    
T  10206670 ctggacgctagt 10206659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 374 - 430
Target Start/End: Complemental strand, 9456997 - 9456941
Alignment:
Q  374 ttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    |||||||| | ||||||||||||||||||| |||||||| ||||||| |||||||||    
T  9456997 ttagcgcaatagaaaaagcggacagacgggtacgggagtgtccgtctagacgctagt 9456941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 380 - 430
Target Start/End: Original strand, 48644159 - 48644209
Alignment:
Q  380 cagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    |||| ||||||||||||||||||| ||| |||| |||||||||||||||||    
T  48644159 cagtagaaaaagcggacagacgggcacgagagtgtccgtctggacgctagt 48644209  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 372 - 430
Target Start/End: Complemental strand, 18535721 - 18535662
Alignment:
Q  372 cgttagcgcagtggaaaaagcggacaga-cgggaacgggagtatccgtctggacgctagt 430  Q
    |||||||||||| |||| |||||||||| |||| ||||||||  ||||||||||||||||    
T  18535721 cgttagcgcagtagaaagagcggacagaccgggcacgggagtgcccgtctggacgctagt 18535662  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 385 - 430
Target Start/End: Complemental strand, 27258324 - 27258279
Alignment:
Q  385 gaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    ||||||||||||||||||| ||| |||| |||||||||| ||||||    
T  27258324 gaaaaagcggacagacgggcacgagagtgtccgtctggatgctagt 27258279  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 385 - 430
Target Start/End: Original strand, 39703138 - 39703183
Alignment:
Q  385 gaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    |||| |||||||||||||| ||||||||  ||||||||||||||||    
T  39703138 gaaagagcggacagacgggcacgggagtgcccgtctggacgctagt 39703183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 235; Significance: 1e-129; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 582 - 915
Target Start/End: Original strand, 14606160 - 14606515
Alignment:
Q  582 ctgctaaaagtacagtacaatttaatttaaaaatattgtacataaccaataaacttccgcaatattgataagaacttcagtttgagagaaaccgcaatat 681  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14606160 ctgctaaaagtacagtacaatttaatttaaaaatattgtacatagccaataaacttccgcaatattgatcagaacttcagtttgagagaaaccgcaatat 14606259  T
Q  682 tgatcagacctcaaattatcaatgaatgagttttctatgtatt-ctgaagttttatt-tttgttctcgtatttgattactaatcttggaaaattattatt 779  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14606260 tgatcagacctcaaattatcaatgaatgagttttcaatgtattcctgaagttttattgtttgttctcgtatttgattactaatcttggaaaattattatt 14606359  T
Q  780 gatttatcaaaattccttgacaat--------------------caccttgacatgtttgaaatcaatacattgctttattaatttaagctcgagtcaag 859  Q
    |||||||||||| |||||||||||                    |||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  14606360 gatttatcaaaaatccttgacaattctaactataaaactggttacaccatgaaatgtttgaaatcaatacattgctttattaatttaagctcgactcaag 14606459  T
Q  860 atttgctattttcgactttatctcatagcgtactctcacatgaagtctcttgccta 915  Q
    ||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||    
T  14606460 atttgctattttcaactttatctcatagcttactctcacatgaattctcttgccta 14606515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 434 - 545
Target Start/End: Original strand, 14606006 - 14606117
Alignment:
Q  434 ttaataaaggcagtacatgcttttggtgtagcctatttttattgcctaaaatatccttgacagtttctattttaacctacaacatatgcaagttgtcaca 533  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||| ||| ||||||||||| |||||||||  ||||||||||    
T  14606006 ttaataaaggcaatacatgcttttgctgtagcctatttttattgcctaaaatacccttgacaatttttattttaacctgcaacatatggtagttgtcaca 14606105  T
Q  534 agtcacaactat 545  Q
    ||||||||||||    
T  14606106 agtcacaactat 14606117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 372 - 430
Target Start/End: Original strand, 23094608 - 23094666
Alignment:
Q  372 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||    
T  23094608 cgttagcgcagtagaaagagcggacagacgggaacgggagtatccgtttggacgctagt 23094666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 369 - 430
Target Start/End: Original strand, 19382994 - 19383055
Alignment:
Q  369 atacgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||  ||||||||||||||||    
T  19382994 atacgttagcgcagtagaaaaagcggacagacgggcacgggagtgcccgtctggacgctagt 19383055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 370 - 473
Target Start/End: Complemental strand, 8848140 - 8848035
Alignment:
Q  370 tacgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt-cct-ttaataaaggcagtac-atgcttttggtgtagcc 466  Q
    |||||||||||||| ||||||||||||||||||| ||||||||  || ||||||||||||| ||| |||||||||||| |||  | ||||||||||||||    
T  8848140 tacgttagcgcagtagaaaaagcggacagacgggcacgggagt-gccctctggacgctagtacctattaataaaggcaatacttttcttttggtgtagcc 8848042  T
Q  467 tattttt 473  Q
    | |||||    
T  8848041 ttttttt 8848035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 372 - 431
Target Start/End: Original strand, 14603975 - 14604034
Alignment:
Q  372 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagtc 431  Q
    |||||||||||| ||||||| ||||||||||| ||||||||  |||||||||||||||||    
T  14603975 cgttagcgcagtagaaaaagtggacagacgggtacgggagtgcccgtctggacgctagtc 14604034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 372 - 430
Target Start/End: Complemental strand, 19214839 - 19214781
Alignment:
Q  372 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    ||||||||| || ||||||||||||||||||| ||||||||  ||||||||||||||||    
T  19214839 cgttagcgcggtagaaaaagcggacagacgggcacgggagtgcccgtctggacgctagt 19214781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 372 - 430
Target Start/End: Original strand, 21393426 - 21393484
Alignment:
Q  372 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    |||||||||||| |||| |||||||||||||| ||||||||  ||||||||||||||||    
T  21393426 cgttagcgcagtagaaagagcggacagacgggcacgggagtgcccgtctggacgctagt 21393484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 369 - 430
Target Start/End: Original strand, 2666141 - 2666202
Alignment:
Q  369 atacgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    ||||||||||||||| |||||| |||||||||||| ||||||||  ||||||||| ||||||    
T  2666141 atacgttagcgcagtagaaaaaacggacagacgggcacgggagtgcccgtctggatgctagt 2666202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 373 - 430
Target Start/End: Original strand, 17724581 - 17724638
Alignment:
Q  373 gttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    ||||||||||| ||||||||||||||||||| | ||||||  ||||||||||||||||    
T  17724581 gttagcgcagtagaaaaagcggacagacgggcatgggagtgcccgtctggacgctagt 17724638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 373 - 430
Target Start/End: Original strand, 23160780 - 23160837
Alignment:
Q  373 gttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    ||||||||||| |||| |||||||||||||| ||||||||  ||||||||||||||||    
T  23160780 gttagcgcagtagaaagagcggacagacgggcacgggagtgcccgtctggacgctagt 23160837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 374 - 430
Target Start/End: Original strand, 19002769 - 19002825
Alignment:
Q  374 ttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    ||||||| || ||||||||||||||||||| ||||||||  ||||||||||||||||    
T  19002769 ttagcgcggtagaaaaagcggacagacgggtacgggagtgcccgtctggacgctagt 19002825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 372 - 430
Target Start/End: Original strand, 15907093 - 15907151
Alignment:
Q  372 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    |||||||||||| |||| |||||||||||||| ||||||||  |||||| |||||||||    
T  15907093 cgttagcgcagtagaaagagcggacagacgggcacgggagtgcccgtctagacgctagt 15907151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 372 - 430
Target Start/End: Complemental strand, 32616956 - 32616898
Alignment:
Q  372 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    |||||||| ||| ||||||||||||||||||| ||||||||  ||||||||||| ||||    
T  32616956 cgttagcgtagtagaaaaagcggacagacgggcacgggagtgcccgtctggacgttagt 32616898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 372 - 430
Target Start/End: Original strand, 8909966 - 8910024
Alignment:
Q  372 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    |||| ||||||| |||||||||| |||||||| ||| ||||  ||||||||||||||||    
T  8909966 cgtttgcgcagtagaaaaagcgggcagacgggcacgagagtgcccgtctggacgctagt 8910024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 372 - 430
Target Start/End: Complemental strand, 21683229 - 21683171
Alignment:
Q  372 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    |||||||||| | |||| |||||||||||||| ||||||||  ||||||| ||||||||    
T  21683229 cgttagcgcaatagaaagagcggacagacgggcacgggagtgcccgtctgaacgctagt 21683171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 434 - 508
Target Start/End: Original strand, 31872998 - 31873072
Alignment:
Q  434 ttaataaaggcagtacatgcttttggtgtagcctatttttattgcctaaaatatccttgacagtttctattttaa 508  Q
    |||||||||| |  |||||  |||||||||||||||||||| ||||||||||| |||| ||| ||| | ||||||    
T  31872998 ttaataaaggaaaaacatggatttggtgtagcctatttttactgcctaaaatacccttcacaatttttgttttaa 31873072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 372 - 430
Target Start/End: Original strand, 31877213 - 31877271
Alignment:
Q  372 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    |||||||||||| |||| |||||||||||||  ||||||||  | ||||||||||||||    
T  31877213 cgttagcgcagtagaaagagcggacagacggatacgggagtgccggtctggacgctagt 31877271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 455 - 508
Target Start/End: Complemental strand, 7463267 - 7463214
Alignment:
Q  455 tttggtgtagcctatttttattgcctaaaatatccttgacagtttctattttaa 508  Q
    |||||||||||||||||||| ||||||||||| |||| ||| ||| | ||||||    
T  7463267 tttggtgtagcctatttttactgcctaaaatacccttcacaatttttgttttaa 7463214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 372 - 429
Target Start/End: Complemental strand, 14603785 - 14603728
Alignment:
Q  372 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctag 429  Q
    |||||| ||||| ||||||||||||||||||| || |||||  |||||| ||||||||    
T  14603785 cgttagtgcagtagaaaaagcggacagacgggcaccggagtggccgtcttgacgctag 14603728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 373 - 430
Target Start/End: Original strand, 17102635 - 17102692
Alignment:
Q  373 gttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    ||||||||||| |||| |||||||||| ||| | ||||||  ||||||||||||||||    
T  17102635 gttagcgcagtagaaagagcggacagatgggcatgggagtgcccgtctggacgctagt 17102692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 23 - 408
Target Start/End: Original strand, 48119414 - 48119802
Alignment:
Q  23 tagatggagaaagaatgaagaatacaaagtgttgtgatgttcttcaccggctatcttttaatgtcttcccatttctcaaaatatttaagaatgagactca 122  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  48119414 tagatggagaaagaatgaagaatacaaagtgttgtgatgttctttactggctatcttttaatgccttcccatttctcaaaatgtttaagaatgagactca 48119513  T
Q  123 aacatacatccacaaagcacatgtttttaaatgtacgtttgatctatg------atttatgttcataatttgaacaaacgatcgagtttattttggatgt 216  Q
    ||||||||| ||||||||||||| |||||||||| ||||| |||||||      ||||||||| |||||||| |||||||||||||||||||||||||||    
T  48119514 aacatacatacacaaagcacatg-ttttaaatgtccgtttaatctatgtttattatttatgttgataatttgtacaaacgatcgagtttattttggatgt 48119612  T
Q  217 tgtaccaacaagtttttggctaataacctaaacacgtagcatatatttacatcttttagtttatca-nnnnnnnnnatccctatcaattgtgtaatttgt 315  Q
    ||||||||||||||||||||   ||||||||||||  | |||||||||||||||||||||||||||          |||||||||||||||||||| | |    
T  48119613 tgtaccaacaagtttttggc---taacctaaacactaaacatatatttacatcttttagtttatcattttttttttatccctatcaattgtgtaatctat 48119709  T
Q  316 agatagttaaattcaaatcaaacttatataaagaaaaataatcaaatctacgcatacgttagcgcagtggaaaaagcggacagacgggaacgg 408  Q
    | |||||||| |||||| ||| |||||| ||||||||||||||||||| |||||||| |||||||| | ||||||||||||||||||| ||||    
T  48119710 aaatagttaacttcaaaccaatcttatacaaagaaaaataatcaaatcaacgcatacattagcgcaatagaaaaagcggacagacgggcacgg 48119802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 369 - 430
Target Start/End: Original strand, 9767929 - 9767990
Alignment:
Q  369 atacgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    ||||||||||||||| |||| |||||||||||||| ||||||||  ||||||||||||||||    
T  9767929 atacgttagcgcagtagaaagagcggacagacgggcacgggagtgcccgtctggacgctagt 9767990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 46124089 - 46124028
Alignment:
Q  369 atacgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||  ||||||| ||||||||    
T  46124089 atacgttagcgcagtagaaaaagcggacagacgggcacgggagtgcccgtctgaacgctagt 46124028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 131
Target Start/End: Complemental strand, 1137881 - 1137790
Alignment:
Q  40 aagaatacaaagtgttgtgatgttcttcaccggctatcttttaatgtcttcccatttctcaaaatatttaagaatgagactcaaacatacat 131  Q
    |||||||||||||||||||||||| |||     ||||||||||||| || || |||||||||||  ||| || |||||||||||||||||||    
T  1137881 aagaatacaaagtgttgtgatgttattcgataactatcttttaatggctcccaatttctcaaaagttttgaggatgagactcaaacatacat 1137790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 372 - 430
Target Start/End: Complemental strand, 11028129 - 11028072
Alignment:
Q  372 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    |||||||||||| ||||||||||||||||||| ||||||||  ||||||||||||||||    
T  11028129 cgttagcgcagtagaaaaagcggacagacgggcacgggagt-gccgtctggacgctagt 11028072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 372 - 430
Target Start/End: Complemental strand, 15212795 - 15212737
Alignment:
Q  372 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    |||||||||||| ||||||||||||||||||| ||||||||  || |||||||||||||    
T  15212795 cgttagcgcagtagaaaaagcggacagacgggcacgggagtgcccatctggacgctagt 15212737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 372 - 430
Target Start/End: Complemental strand, 15252014 - 15251956
Alignment:
Q  372 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    |||||||||||| ||||||||||||||||||| ||||||||  || |||||||||||||    
T  15252014 cgttagcgcagtagaaaaagcggacagacgggcacgggagtgcccatctggacgctagt 15251956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 372 - 430
Target Start/End: Complemental strand, 22155434 - 22155376
Alignment:
Q  372 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    |||||||| ||| |||||| |||||||||||| |||||||| |||||||||||||||||    
T  22155434 cgttagcgtagtagaaaaaacggacagacgggcacgggagtgtccgtctggacgctagt 22155376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 336 - 403
Target Start/End: Complemental strand, 1136224 - 1136157
Alignment:
Q  336 aacttatataaagaaaaataatcaaatctacgcatacgttagcgcagtggaaaaagcggacagacggg 403  Q
    |||||||| ||||||| ||||| || | || ||||||||||||||||| |||||| ||||||||||||    
T  1136224 aacttatacaaagaaacataattaagtatatgcatacgttagcgcagtagaaaaaacggacagacggg 1136157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 369 - 431
Target Start/End: Complemental strand, 53157340 - 53157278
Alignment:
Q  369 atacgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagtc 431  Q
    |||| |||||||||| |||| |||||||||||||| ||| ||||  |||||||||||||||||    
T  53157340 atacattagcgcagtagaaagagcggacagacgggcacgagagtgcccgtctggacgctagtc 53157278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 373 - 430
Target Start/End: Complemental strand, 21972702 - 21972645
Alignment:
Q  373 gttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    ||||||| ||| ||||||||||||| ||||| ||||||||  ||||||||||||||||    
T  21972702 gttagcgtagtagaaaaagcggacaaacgggcacgggagtgcccgtctggacgctagt 21972645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 373 - 430
Target Start/End: Complemental strand, 21995133 - 21995076
Alignment:
Q  373 gttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    ||||||| ||| ||||||||||||| ||||| ||||||||  ||||||||||||||||    
T  21995133 gttagcgtagtagaaaaagcggacaaacgggcacgggagtgcccgtctggacgctagt 21995076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 373 - 430
Target Start/End: Original strand, 41935243 - 41935300
Alignment:
Q  373 gttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    |||| |||||| |||| |||||||||||||| ||||||||  ||||||||||||||||    
T  41935243 gttaacgcagtagaaagagcggacagacgggcacgggagtgcccgtctggacgctagt 41935300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 372 - 430
Target Start/End: Original strand, 6079879 - 6079937
Alignment:
Q  372 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    |||||||||||| ||||||||||||||||||| |||| |||  | ||||| ||||||||    
T  6079879 cgttagcgcagtagaaaaagcggacagacgggcacggaagtgccggtctgaacgctagt 6079937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 368 - 430
Target Start/End: Complemental strand, 24552643 - 24552581
Alignment:
Q  368 catacgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    ||||| |||||||||| |||||||| |||||||||  ||  |||| |||||||||||||||||    
T  24552643 catactttagcgcagtagaaaaagcagacagacggacacatgagtgtccgtctggacgctagt 24552581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 368 - 430
Target Start/End: Complemental strand, 24558782 - 24558720
Alignment:
Q  368 catacgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    ||||| |||||||||| |||||||| |||||||||  ||  |||| |||||||||||||||||    
T  24558782 catactttagcgcagtagaaaaagcagacagacggacacaagagtgtccgtctggacgctagt 24558720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 137; Significance: 5e-71; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 23 - 282
Target Start/End: Original strand, 41475696 - 41475956
Alignment:
Q  23 tagatggagaaagaatgaagaatacaaagtgttgtgatgttcttcaccggctatcttttaatgtcttcccatttctcaaaatatttaagaatgagactca 122  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||| ||||  |||||||||||| |||||||||||||||||    
T  41475696 tagatggagaaagaatgaagaatacaaagtgtcgtgatgttcttcactgactatcttttaatgccttcttatttctcaaaatgtttaagaatgagactca 41475795  T
Q  123 aacatacatccacaaagcacatgtttttaaatgtacgtttgatctatg------atttatgttcataatttgaacaaacgatcgagtttattttggatgt 216  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||      ||||||||| |||| ||| |||||||||||||||||||||||||||    
T  41475796 aacatacatacacaaagcacatg-ttttaaatgtacgtttgatctatgtttattatttatgttgataacttgtacaaacgatcgagtttattttggatgt 41475894  T
Q  217 tgtaccaacaagtttttggctaataacctaaacacgtagcatatatttacatcttttagtttatca 282  Q
    || | |||||| ||||||||   |||||||||||   |  |||||||||||| |||||||||||||    
T  41475895 tgcaacaacaa-tttttggc---taacctaaacaataaaaatatatttacatattttagtttatca 41475956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 334 - 430
Target Start/End: Original strand, 41476035 - 41476131
Alignment:
Q  334 caaacttatataaagaaaaataatcaaatctacgcatacgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    |||||||||| | ||||||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||  |||||||| |||||||| ||||||||    
T  41476035 caaacttataaatagaaaaataatcaaatcaacgcatacgttagtgcagtagaaaaagcggacagatggacacgggagtgtccgtctgaacgctagt 41476131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 372 - 430
Target Start/End: Original strand, 15723291 - 15723349
Alignment:
Q  372 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    |||||||||||| |||| |||||||||||||| ||||||||  ||||||||||||||||    
T  15723291 cgttagcgcagtagaaagagcggacagacgggcacgggagtgcccgtctggacgctagt 15723349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 373 - 428
Target Start/End: Complemental strand, 2248099 - 2248044
Alignment:
Q  373 gttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgcta 428  Q
    ||||||||||| |||| |||||||||||||  |||||||| |||||||||||||||    
T  2248099 gttagcgcagtagaaagagcggacagacggacacgggagtgtccgtctggacgcta 2248044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 434 - 508
Target Start/End: Complemental strand, 15847449 - 15847375
Alignment:
Q  434 ttaataaaggcagtacatgcttttggtgtagcctatttttattgcctaaaatatccttgacagtttctattttaa 508  Q
    ||||||||||||  |||||  |||||||||||||||||||| ||||||||||| |||| ||| ||| | ||||||    
T  15847449 ttaataaaggcaaaacatggatttggtgtagcctatttttactgcctaaaatacccttcacaatttttgttttaa 15847375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 372 - 430
Target Start/End: Original strand, 44201672 - 44201730
Alignment:
Q  372 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    |||||||||||| |||| |||||||||||||| ||||||||  |||||| |||||||||    
T  44201672 cgttagcgcagtagaaagagcggacagacgggcacgggagtgcccgtctagacgctagt 44201730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 369 - 430
Target Start/End: Original strand, 46123005 - 46123066
Alignment:
Q  369 atacgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    |||||||||||||||  |||| ||| ||||||||| ||||||||  ||||||||||||||||    
T  46123005 atacgttagcgcagtaaaaaatgcgaacagacgggcacgggagtgcccgtctggacgctagt 46123066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 434 - 499
Target Start/End: Original strand, 48278551 - 48278616
Alignment:
Q  434 ttaataaaggcagtacatgcttttggtgtagcctatttttattgcctaaaatatccttgacagttt 499  Q
    |||||||||||| ||| |  |||| |||||||||||||||| | ||||||||| ||||||||||||    
T  48278551 ttaataaaggcaatacttaattttcgtgtagcctatttttacttcctaaaatacccttgacagttt 48278616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 372 - 431
Target Start/End: Original strand, 19193807 - 19193866
Alignment:
Q  372 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagtc 431  Q
    |||||||||||| |||| ||||||||||| || || |||||  |||||||||||||||||    
T  19193807 cgttagcgcagtagaaagagcggacagacaggcacaggagtgcccgtctggacgctagtc 19193866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 434 - 508
Target Start/End: Complemental strand, 18509651 - 18509577
Alignment:
Q  434 ttaataaaggcagtacatgcttttggtgtagcctatttttattgcctaaaatatccttgacagtttctattttaa 508  Q
    ||||||||||||  ||||   |||||||||||||||||||| ||||||||||| |||| ||| ||| | ||||||    
T  18509651 ttaataaaggcaaaacatagatttggtgtagcctatttttactgcctaaaatacccttcacaatttttgttttaa 18509577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 5e-40; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 434 - 534
Target Start/End: Complemental strand, 44970879 - 44970779
Alignment:
Q  434 ttaataaaggcagtacatgcttttggtgtagcctatttttattgcctaaaatatccttgacagtttctattttaacctacaacatatgcaagttgtcaca 533  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||    
T  44970879 ttaataaaggcaatacatgcttttggtgtagcctatttttattgcctaaaatacccttgacagtttttattttaacctacaacatatgcaagctgtcaca 44970780  T
Q  534 a 534  Q
    |    
T  44970779 a 44970779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 582 - 678
Target Start/End: Complemental strand, 44970742 - 44970646
Alignment:
Q  582 ctgctaaaagtacagtacaatttaatttaaaaatattgtacataaccaataaacttccgcaatattgataagaacttcagtttgagagaaaccgcaa 678  Q
    |||||||||||||| |||||||||||| ||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  44970742 ctgctaaaagtacaatacaatttaattaaaaaatattttacatagccaataaacttccgcaatattgatcagaacttcagtttgagagaaactgcaa 44970646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 374 - 430
Target Start/End: Complemental strand, 23120578 - 23120522
Alignment:
Q  374 ttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    |||||||||| ||||||||||||||| ||| |||||||| |||||||||||||||||    
T  23120578 ttagcgcagtagaaaaagcggacagatgggcacgggagtgtccgtctggacgctagt 23120522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 508323 - 508262
Alignment:
Q  369 atacgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    |||||||||||||||  |||| ||||||||||||| ||| ||||  ||||||||||||||||    
T  508323 atacgttagcgcagtaaaaaatgcggacagacgggcacgagagtgcccgtctggacgctagt 508262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 339 - 430
Target Start/End: Complemental strand, 22216514 - 22216423
Alignment:
Q  339 ttatataaagaaaaataatcaaatctacgcatacgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    ||||| ||| ||| ||||||||||  |  |||||||||||||| | |||||| ||||||||| |  ||||||||  ||||||||||||||||    
T  22216514 ttatacaaaaaaatataatcaaatacatacatacgttagcgcaatagaaaaaacggacagacagatacgggagtgcccgtctggacgctagt 22216423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 372 - 430
Target Start/End: Complemental strand, 8223788 - 8223730
Alignment:
Q  372 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    |||||| ||||| |||| |||||||||| ||| ||||||||  ||||||||||||||||    
T  8223788 cgttagtgcagtagaaagagcggacagaagggcacgggagtgcccgtctggacgctagt 8223730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 374 - 424
Target Start/End: Complemental strand, 21349454 - 21349404
Alignment:
Q  374 ttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggac 424  Q
    |||||||||| |||| |||||||||||||| |||||||| | |||||||||    
T  21349454 ttagcgcagtagaaagagcggacagacgggcacgggagtgtacgtctggac 21349404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 370 - 403
Target Start/End: Original strand, 23126932 - 23126965
Alignment:
Q  370 tacgttagcgcagtggaaaaagcggacagacggg 403  Q
    |||||||||||||| |||||||||||||||||||    
T  23126932 tacgttagcgcagtagaaaaagcggacagacggg 23126965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 373 - 430
Target Start/End: Original strand, 45537326 - 45537383
Alignment:
Q  373 gttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    |||||||| || ||||||||| ||||||||| || |||||  ||||||||||||||||    
T  45537326 gttagcgcggtagaaaaagcgaacagacgggcacaggagtgcccgtctggacgctagt 45537383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 1e-37; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 434 - 534
Target Start/End: Complemental strand, 35332649 - 35332549
Alignment:
Q  434 ttaataaaggcagtacatgcttttggtgtagcctatttttattgcctaaaatatccttgacagtttctattttaacctacaacatatgcaagttgtcaca 533  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||    
T  35332649 ttaataaaggcaatacatgcttttagtgtagcctatttttattgcctaaaatacccttgacagtttttattttaacctacaacatatgcaagctgtcaca 35332550  T
Q  534 a 534  Q
    |    
T  35332549 a 35332549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 582 - 678
Target Start/End: Complemental strand, 35332511 - 35332415
Alignment:
Q  582 ctgctaaaagtacagtacaatttaatttaaaaatattgtacataaccaataaacttccgcaatattgataagaacttcagtttgagagaaaccgcaa 678  Q
    |||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  35332511 ctgctaaaagtacaatacaatttaattaaaaaatattgtacatagccaataaacttccgcaatattgatcagaacttcagtttgagagaaactgcaa 35332415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 371 - 430
Target Start/End: Complemental strand, 22362616 - 22362557
Alignment:
Q  371 acgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    ||||||||||||| ||||||||||||||||||| ||||||||  ||||||||||||||||    
T  22362616 acgttagcgcagtagaaaaagcggacagacgggcacgggagtgcccgtctggacgctagt 22362557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 21112772 - 21112711
Alignment:
Q  369 atacgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    |||||||| |||||| |||| |||||||||||||| ||||||||  ||||||||||||||||    
T  21112772 atacgttatcgcagtagaaagagcggacagacgggcacgggagtgcccgtctggacgctagt 21112711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 372 - 430
Target Start/End: Original strand, 42883073 - 42883131
Alignment:
Q  372 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    ||||||||||||  ||| |||||||||||||| ||||||||  ||||||||||||||||    
T  42883073 cgttagcgcagtaaaaagagcggacagacgggcacgggagtgcccgtctggacgctagt 42883131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 371 - 424
Target Start/End: Original strand, 27032680 - 27032733
Alignment:
Q  371 acgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggac 424  Q
    ||||||||||||| |||| |||||||||||||| ||||||||  ||||||||||    
T  27032680 acgttagcgcagtagaaagagcggacagacgggcacgggagtgcccgtctggac 27032733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 373 - 430
Target Start/End: Complemental strand, 38925494 - 38925437
Alignment:
Q  373 gttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    ||||||| ||| |||| |||||||||||||| ||||||||  ||||||||||||||||    
T  38925494 gttagcgtagtagaaagagcggacagacgggcacgggagtgcccgtctggacgctagt 38925437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 324 - 402
Target Start/End: Complemental strand, 28256405 - 28256327
Alignment:
Q  324 aaattcaaatcaaacttatataaagaaaaataatcaaatctacgcatacgttagcgcagtggaaaaagcggacagacgg 402  Q
    ||||| |||||||| ||||| ||| ||||||||| ||||   | ||| |||||||||||| |||| |||||||||||||    
T  28256405 aaatttaaatcaaaattatacaaacaaaaataataaaataatcacatgcgttagcgcagtagaaagagcggacagacgg 28256327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 385 - 430
Target Start/End: Original strand, 29391378 - 29391423
Alignment:
Q  385 gaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    ||||||||||||| ||||| |||||||| |||||||||||| ||||    
T  29391378 gaaaaagcggacaaacgggcacgggagtgtccgtctggacgatagt 29391423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 373 - 430
Target Start/End: Complemental strand, 35328867 - 35328810
Alignment:
Q  373 gttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    ||||||||||| |||| |||||||||||||| ||| || |  ||||||||||||||||    
T  35328867 gttagcgcagtagaaagagcggacagacgggcacgtgaatgcccgtctggacgctagt 35328810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 368 - 430
Target Start/End: Complemental strand, 6611 - 6549
Alignment:
Q  368 catacgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||  ||||||||||||||||    
T  6611 catacgttagcgcagtagaaaaagcggacagacgggtacgggagtgcccgtctggacgctagt 6549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 368 - 430
Target Start/End: Original strand, 2707131 - 2707193
Alignment:
Q  368 catacgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||  ||||||||||||||||    
T  2707131 catacgttagcgcagtagaaaaagcggacagacgggcacgggagtgcccgtctggacgctagt 2707193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 368 - 430
Target Start/End: Original strand, 31898581 - 31898643
Alignment:
Q  368 catacgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    |||||||||||||||| |||| |||||| ||||||| ||||||||  ||||||||||||||||    
T  31898581 catacgttagcgcagtagaaagagcggatagacgggcacgggagtgcccgtctggacgctagt 31898643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 373 - 430
Target Start/End: Complemental strand, 45073861 - 45073808
Alignment:
Q  373 gttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    ||||||||||||||||||||||||||||||| ||||||||    ||||||||||||||    
T  45073861 gttagcgcagtggaaaaagcggacagacgggcacgggagt----gtctggacgctagt 45073808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 372 - 430
Target Start/End: Complemental strand, 24863970 - 24863912
Alignment:
Q  372 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    |||||||||||| |||||||||||||||| || ||| ||||  ||||||||||||||||    
T  24863970 cgttagcgcagtagaaaaagcggacagacaggcacgagagtgcccgtctggacgctagt 24863912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 372 - 430
Target Start/End: Complemental strand, 25417138 - 25417080
Alignment:
Q  372 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    |||||||||||| |||| |||||||||||||| || ||||| ||| |||||||||||||    
T  25417138 cgttagcgcagtagaaagagcggacagacgggcacaggagtgtccatctggacgctagt 25417080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 368 - 412
Target Start/End: Original strand, 39907536 - 39907580
Alignment:
Q  368 catacgttagcgcagtggaaaaagcggacagacgggaacgggagt 412  Q
    |||||||||||||||| |||||| |||||| ||||||||||||||    
T  39907536 catacgttagcgcagtagaaaaaacggacaaacgggaacgggagt 39907580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 372 - 430
Target Start/End: Original strand, 24079509 - 24079567
Alignment:
Q  372 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    |||||||||||| |||| |||||||||||||  ||||||||  | ||||||||||||||    
T  24079509 cgttagcgcagtagaaagagcggacagacggacacgggagtgcctgtctggacgctagt 24079567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 46; Significance: 9e-17; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 46345 - 46284
Alignment:
Q  369 atacgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||  ||||||||||||||||    
T  46345 atacgttagcgcagtagaaaaagcggacagacgggcacgggagtgcccgtctggacgctagt 46284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 372 - 430
Target Start/End: Original strand, 789 - 847
Alignment:
Q  372 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    |||||||||||| ||||||||||||||||||| ||||||||  ||||||||||||||||    
T  789 cgttagcgcagtagaaaaagcggacagacgggcacgggagtgcccgtctggacgctagt 847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 368 - 427
Target Start/End: Original strand, 4583 - 4642
Alignment:
Q  368 catacgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgct 427  Q
    |||||||||||||||| |||| || ||||||||||| ||||||||| |||||||||||||    
T  4583 catacgttagcgcagtagaaagagtggacagacgggcacgggagtacccgtctggacgct 4642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 372 - 430
Target Start/End: Original strand, 52538 - 52596
Alignment:
Q  372 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    |||||||||||| |||| |||||||||||||| ||||||||  ||||||||||||||||    
T  52538 cgttagcgcagtagaaagagcggacagacgggcacgggagtgcccgtctggacgctagt 52596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 373 - 430
Target Start/End: Original strand, 43593847 - 43593904
Alignment:
Q  373 gttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    ||||||||||| |||| |||||||||||||| ||||||||  ||||||||||||||||    
T  43593847 gttagcgcagtagaaagagcggacagacgggcacgggagtgcccgtctggacgctagt 43593904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 35577413 - 35577352
Alignment:
Q  369 atacgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    ||||||||||||| |  |||| ||||||||||||| ||||||||  ||||||||||||||||    
T  35577413 atacgttagcgcaataaaaaatgcggacagacgggcacgggagtgcccgtctggacgctagt 35577352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 339 - 404
Target Start/End: Complemental strand, 51033401 - 51033336
Alignment:
Q  339 ttatataaagaaaaataatcaaatctacgcatacgttagcgcagtggaaaaagcggacagacggga 404  Q
    |||||||||||||||||||||||||||  |||| ||||||||| | ||||||   |||||||||||    
T  51033401 ttatataaagaaaaataatcaaatctaaacatatgttagcgcaatagaaaaaaatgacagacggga 51033336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 372 - 430
Target Start/End: Complemental strand, 16612280 - 16612222
Alignment:
Q  372 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    |||||||||||| |||| |||||||||||||| | || ||| |||||| ||||||||||    
T  16612280 cgttagcgcagtagaaagagcggacagacgggtatggaagtgtccgtccggacgctagt 16612222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 372 - 430
Target Start/End: Original strand, 18811327 - 18811385
Alignment:
Q  372 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    |||||||||||| |||| || ||||||||||| |||||| |  ||||||||||||||||    
T  18811327 cgttagcgcagtagaaagagtggacagacgggcacgggaatgcccgtctggacgctagt 18811385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 372 - 430
Target Start/End: Complemental strand, 50377384 - 50377326
Alignment:
Q  372 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    ||||| |||||| |||| |||||||||||||| ||||||||  ||||||| ||||||||    
T  50377384 cgttaacgcagtagaaagagcggacagacgggcacgggagtgcccgtctgaacgctagt 50377326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 378 - 429
Target Start/End: Original strand, 5207 - 5257
Alignment:
Q  378 cgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctag 429  Q
    |||||| ||||||||| |||||||||||| ||||| ||||||||||||||||    
T  5207 cgcagtagaaaaagcgaacagacgggaac-ggagtgtccgtctggacgctag 5257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 368 - 430
Target Start/End: Original strand, 28438 - 28500
Alignment:
Q  368 catacgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    ||||| |||||||||| ||||||||||| ||||||| | ||||||  | ||||||||||||||    
T  28438 catacattagcgcagtagaaaaagcggatagacgggcatgggagtgcctgtctggacgctagt 28500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 372 - 430
Target Start/End: Complemental strand, 102290 - 102232
Alignment:
Q  372 cgttagcgcagtggaaaaagcggacagacgggaacgggagtatccgtctggacgctagt 430  Q
    |||| ||||||| |||| |||||||| ||||| ||||||||  ||||||||||||||||    
T  102290 cgttggcgcagtagaaagagcggacaaacgggcacgggagtgcccgtctggacgctagt 102232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2142 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 454 - 499
Target Start/End: Original strand, 395 - 440
Alignment:
Q  454 ttttggtgtagcctatttttattgcctaaaatatccttgacagttt 499  Q
    ||||||||||||||||||||| | ||| ||||| ||||||||||||    
T  395 ttttggtgtagcctatttttacttccttaaatacccttgacagttt 440  T

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Target: scaffold0086 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 368 - 409
Target Start/End: Original strand, 42469 - 42510
Alignment:
Q  368 catacgttagcgcagtggaaaaagcggacagacgggaacggg 409  Q
    |||||||||||||| | ||||||||||||||||||| |||||    
T  42469 catacgttagcgcactagaaaaagcggacagacgggcacggg 42510  T

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