View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9170_low_11 (Length: 316)
Name: NF9170_low_11
Description: NF9170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9170_low_11 |
 | |
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| [»] chr3 (7 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr8 (5 HSPs) |
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| [»] scaffold0051 (1 HSPs) |
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| [»] chr2 (4 HSPs) |
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| [»] scaffold0040 (1 HSPs) |
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| [»] scaffold0022 (1 HSPs) |
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| [»] scaffold0130 (1 HSPs) |
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| [»] scaffold0016 (2 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0319 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0064 (1 HSPs) |
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| [»] scaffold0241 (1 HSPs) |
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| [»] scaffold0108 (1 HSPs) |
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| [»] scaffold0005 (1 HSPs) |
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| [»] scaffold0026 (1 HSPs) |
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| [»] scaffold0001 (2 HSPs) |
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| [»] scaffold0046 (1 HSPs) |
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| [»] scaffold0656 (1 HSPs) |
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| [»] scaffold0107 (1 HSPs) |
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| [»] scaffold0362 (1 HSPs) |
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| [»] scaffold0282 (1 HSPs) |
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| [»] scaffold0053 (1 HSPs) |
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| [»] scaffold0013 (1 HSPs) |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 14692941 - 14693256
Alignment:
| Q |
1 |
ttcaaatcggagtcatagagtccaatttttccgagaaaagattgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgc |
100 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
14692941 |
ttcaagtcggagtcataaagtccaatttttcccagaaaagattgaggcagcaagttgacggtggctccaccatctactagtactttatttacccctacgc |
14693040 |
T |
|
| Q |
101 |
cattgatcttggcctgaataaataaaggcttgagatgcgatttcatcgaaatatctggtttctcgaaaaccgcatgttgcttttccacacagccattatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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|
| T |
14693041 |
cattgatcttggcctgaataaataaaggcttgagatgcgattttatcgaaatatctggtttctcgaaaaccgcatgttgttcttccacacagccattatt |
14693140 |
T |
|
| Q |
201 |
catgacataatagcacagtggcttgtgagttgctatttcatcgtcgaaatcactttcctcttcattaatctctgcccggacatcgtattcctcaggcagg |
300 |
Q |
| |
|
||||||||||||||| ||||||||||||||| | ||||||||| |||| ||| |||| |||||||||| |||| | |||||||||||||| |||||| | |
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|
| T |
14693141 |
catgacataatagcatagtggcttgtgagtttccatttcatcgacgaagtcaatttcaacttcattaatttctgactggacatcgtattccacaggcaag |
14693240 |
T |
|
| Q |
301 |
atagaaaccacattgc |
316 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
14693241 |
atagaaaccacattgc |
14693256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 7401701 - 7402016
Alignment:
| Q |
1 |
ttcaaatcggagtcatagagtccaatttttccgagaaaagattgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgc |
100 |
Q |
| |
|
||||| || |||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7401701 |
ttcaagtcagagtcatagagtccaattatttccagaaaagattgaggcagcaagttgacggtggctccaccatctactagtactttatttacccctacgc |
7401800 |
T |
|
| Q |
101 |
cattgatcttggcctgaataaataaaggcttgagatgcgatttcatcgaaatatctggtttctcgaaaaccgcatgttgcttttccacacagccattatt |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||| |||||||||||||| | |||||| ||||||||||| |
|
|
| T |
7401801 |
catttatcttggcctgaataaataaaggcttgagatgcgctttcatcgagatatctggcttctcaaaaaccgcatgttgttcttccacgcagccattatt |
7401900 |
T |
|
| Q |
201 |
catgacataatagcacagtggcttgtgagttgctatttcatcgtcgaaatcactttcctcttcattaatctctgcccggacatcgtattcctcaggcagg |
300 |
Q |
| |
|
||||||||||||||| |||||||||||| |||| ||||||||| | || ||||||||| ||||||||||||||| | ||||||||||||||||||||||| |
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|
| T |
7401901 |
catgacataatagcatagtggcttgtgaattgccatttcatcgacaaagtcactttccacttcattaatctctgactggacatcgtattcctcaggcagg |
7402000 |
T |
|
| Q |
301 |
atagaaaccacattgc |
316 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
7402001 |
attgaaaccacattgc |
7402016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 7365158 - 7365431
Alignment:
| Q |
1 |
ttcaaatcggagtcatagagtccaatttttccgagaaaagattgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgc |
100 |
Q |
| |
|
||||| || |||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7365158 |
ttcaagtcagagtcatagagtccaattatttccagaaaagattgaggcagcaagttgacggtggctccaccatctactagtactttatttacccctacgc |
7365257 |
T |
|
| Q |
101 |
cattgatcttggcctgaataaataaaggcttgagatgcgatttcatcgaaatatctggtttctcgaaaaccgcatgttgcttttccacacagccattatt |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||| |||||||||||||| | |||||| ||||||||||| |
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|
| T |
7365258 |
catttatcttggcctgaataaataaaggcttgagatgcgctttcatcgagatatctggcttctcaaaaaccgcatgttgttcttccacgcagccattatt |
7365357 |
T |
|
| Q |
201 |
catgacataatagcacagtggcttgtgagttgctatttcatcgtcgaaatcactttcctcttcattaatctctg |
274 |
Q |
| |
|
||||||||||||||| |||||||||||| |||| ||||||||| | || ||||||||| ||||||||||||||| |
|
|
| T |
7365358 |
catgacataatagcatagtggcttgtgaattgccatttcatcgacaaagtcactttccacttcattaatctctg |
7365431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 13 - 314
Target Start/End: Complemental strand, 10782624 - 10782323
Alignment:
| Q |
13 |
tcatagagtccaatttttccgagaaaagattgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgccattgatcttgg |
112 |
Q |
| |
|
||||||||||| ||| | || || |||||||||||||||| |||||||||||||||||||| || ||||||||||||||||| |||||||| ||||||| |
|
|
| T |
10782624 |
tcatagagtcctattctccccaggaaagattgaggcagcagattgacggtggctccaccatctaccagtactttatttacccccacgccatttatcttgg |
10782525 |
T |
|
| Q |
113 |
cctgaataaataaaggcttgagatgcgatttcatcgaaatatctggtttctcgaaaaccgcatgttgcttttccacacagccattattcatgacataata |
212 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||| ||||||||||||||||||| |
|
|
| T |
10782524 |
cctgaataaataaaggcttaagatgcgatttcatcgaaatatctggcttctcgaaaaccgcatgttgttcttccacacagtcattattcatgacataata |
10782425 |
T |
|
| Q |
213 |
gcacagtggcttgtgagttgctatttcatcgtcgaaatcactttcctcttcattaatctctgcccggacatcgtattcctcaggcaggatagaaaccaca |
312 |
Q |
| |
|
||||||||| ||||||||||| || |||||| | ||||||||||| |||||||||| |||| | ||||||| |||||| |||||| || ||||||||| |
|
|
| T |
10782424 |
gcacagtggtttgtgagttgccatctcatcgacaaaatcactttcggcttcattaatttctgactggacatcatattccacaggcaaaatggaaaccaca |
10782325 |
T |
|
| Q |
313 |
tt |
314 |
Q |
| |
|
|| |
|
|
| T |
10782324 |
tt |
10782323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 10151267 - 10150952
Alignment:
| Q |
1 |
ttcaaatcggagtcatagagtccaatttttccgagaaaagattgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgc |
100 |
Q |
| |
|
|||||||| || |||||||||||||| ||||| || || |||||||| |||| |||||| |||||||||||||| |||| || ||||||||||| || | |
|
|
| T |
10151267 |
ttcaaatcagaatcatagagtccaatctttcccaggaacgattgagggagcaggttgactgtggctccaccatcaactaacacgttatttacccccacac |
10151168 |
T |
|
| Q |
101 |
cattgatcttggcctgaataaataaaggcttgagatgcgatttcatcgaaatatctggtttctcgaaaaccgcatgttgcttttccacacagccattatt |
200 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||| | ||||||||| | |||| ||| || || || |||||||||| ||| ||||| |||||||| |
|
|
| T |
10151167 |
cattgattttagcctgaataaataaaggcttgagatgtaacttcatcgaagtgtctgatttttcaaagactgcatgttgctcttctacacaaccattatt |
10151068 |
T |
|
| Q |
201 |
catgacataatagcacagtggcttgtgagttgctatttcatcgtcgaaatcactttcctcttcattaatctctgcccggacatcgtattcctcaggcagg |
300 |
Q |
| |
|
||||||||||||||| |||||||||||| |||| ||||||||| |||||||||||| |||||||||| |||| | | || || |||||| |||| || |
|
|
| T |
10151067 |
catgacataatagcatagtggcttgtgaattgccatttcatcgatgaaatcactttcaacttcattaatttctgacggaacgtcatattccacaggtagt |
10150968 |
T |
|
| Q |
301 |
atagaaaccacattgc |
316 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
10150967 |
atagaaaccacattgc |
10150952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 10 - 167
Target Start/End: Original strand, 13306636 - 13306793
Alignment:
| Q |
10 |
gagtcatagagtccaatttttccgagaaaagattgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgccattgatct |
109 |
Q |
| |
|
|||||||| ||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
13306636 |
gagtcataaagtccaattcttcccagaaatgattgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgccattgattt |
13306735 |
T |
|
| Q |
110 |
tggcctgaataaataaaggcttgagatgcgatttcatcgaaatatctggtttctcgaa |
167 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||| |||||||||| ||||| |
|
|
| T |
13306736 |
tggcctgaataaataaaggcttgagatgtgacttcatcgaagtatctggtttttcgaa |
13306793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 207 - 316
Target Start/End: Original strand, 13306797 - 13306906
Alignment:
| Q |
207 |
ataatagcacagtggcttgtgagttgctatttcatcgtcgaaatcactttcctcttcattaatctctgcccggacatcgtattcctcaggcaggatagaa |
306 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||| ||||| ||| | | |||||||||||| | || ||||||||| |
|
|
| T |
13306797 |
ataatagcacagtggcttgtgagttgccatttcatcgacgaaatcactttcaacttcgttaatttctaactgaacatcgtattccaccggtaggatagaa |
13306896 |
T |
|
| Q |
307 |
accacattgc |
316 |
Q |
| |
|
|||||||||| |
|
|
| T |
13306897 |
accacattgc |
13306906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 14342371 - 14342686
Alignment:
| Q |
1 |
ttcaaatcggagtcatagagtccaatttttccgagaaaagattgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgc |
100 |
Q |
| |
|
||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
14342371 |
ttcaagtcagagtcatagagtccaatttttcctagaaaagattgaggcagcaagttgacggtggctccaccatctactagtactttatttacccctacac |
14342470 |
T |
|
| Q |
101 |
cattgatcttggcctgaataaataaaggcttgagatgcgatttcatcgaaatatctggtttctcgaaaaccgcatgttgcttttccacacagccattatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
14342471 |
cattgatcttggcctgaataaataaaggcttgagatgcgatttcctcaaaatatctggcttctcgaaaaccgcatgttgttcttccacacagccattatt |
14342570 |
T |
|
| Q |
201 |
catgacataatagcacagtggcttgtgagttgctatttcatcgtcgaaatcactttcctcttcattaatctctgcccggacatcgtattcctcaggcagg |
300 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||| | || ||| ||||| ||||||||||||||| | |||||||||||||| |||||||| |
|
|
| T |
14342571 |
catgacataatagcatagtggcttgtgagttgccatttcatcgacaaagtcattttccacttcattaatctctgactggacatcgtattccacaggcagg |
14342670 |
T |
|
| Q |
301 |
atagaaaccacattgc |
316 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
14342671 |
attgaaaccacattgc |
14342686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 13 - 315
Target Start/End: Original strand, 18171361 - 18171663
Alignment:
| Q |
13 |
tcatagagtccaatttttccgagaaaagattgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgccattgatcttgg |
112 |
Q |
| |
|
|||||||||||||| ||||| || || |||||||| || | |||||| || |||||||||||||||| |||||||||||||| || ||||||||||||| |
|
|
| T |
18171361 |
tcatagagtccaatctttcctaggaatgattgagggagtaggttgacagtagctccaccatccactaacactttatttacccccacaccattgatcttgg |
18171460 |
T |
|
| Q |
113 |
cctgaataaataaaggcttgagatgcgatttcatcgaaatatctggtttctcgaaaaccgcatgttgcttttccacacagccattattcatgacataata |
212 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||| ||| | |||||||| || || || |||||||||| ||| ||||| |||||||||||||||||||| |
|
|
| T |
18171461 |
cctgaataaataaaggcttgagatgcaacttcattgaagtgtctggtttttcaaagactgcatgttgctcttctacacaaccattattcatgacataata |
18171560 |
T |
|
| Q |
213 |
gcacagtggcttgtgagttgctatttcatcgtcgaaatcactttcctcttcattaatctctgcccggacatcgtattcctcaggcaggatagaaaccaca |
312 |
Q |
| |
|
||| ||||||||||||||||| ||||||||| |||||||||||| | |||| ||||| |||| | | || | ||||||| | | ||||||||||||||| |
|
|
| T |
18171561 |
gcatagtggcttgtgagttgccatttcatcgacgaaatcactttgcacttcgttaatttctgactgaacgttgtattccaccagtaggatagaaaccaca |
18171660 |
T |
|
| Q |
313 |
ttg |
315 |
Q |
| |
|
||| |
|
|
| T |
18171661 |
ttg |
18171663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 17422569 - 17422884
Alignment:
| Q |
1 |
ttcaaatcggagtcatagagtccaatttttccgagaaaagattgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgc |
100 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
17422569 |
ttcaattcggagtcataaagtccaatttttcccagaaatgattgaggcagcaagttgacggtggctccaccatctactagtactttatttacccctactc |
17422668 |
T |
|
| Q |
101 |
cattgatcttggcctgaataaataaaggcttgagatgcgatttcatcgaaatatctggtttctcgaaaaccgcatgttgcttttccacacagccattatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||| |||||||||||| | |||||||| ||||| || |||||||||| ||| ||||| |||||||| |
|
|
| T |
17422669 |
cattgatcttggcctgaataaataaaggtttgatatgtgatttcatcgaagtttctggtttttcgaagactgcatgttgctcttctacacaaccattatt |
17422768 |
T |
|
| Q |
201 |
catgacataatagcacagtggcttgtgagttgctatttcatcgtcgaaatcactttcctcttcattaatctctgcccggacatcgtattcctcaggcagg |
300 |
Q |
| |
|
|||||||||| |||| ||||||||||| ||||| ||||||||| |||||||||||||| ||| ||||| |||| | |||||||||||||| |||| ||| |
|
|
| T |
17422769 |
catgacataagagcatagtggcttgtgggttgccatttcatcgacgaaatcactttccactttgttaatttctgactggacatcgtattccacaggtagg |
17422868 |
T |
|
| Q |
301 |
atagaaaccacattgc |
316 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
17422869 |
atagaaaccacattgc |
17422884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 55 - 314
Target Start/End: Complemental strand, 1735723 - 1735464
Alignment:
| Q |
55 |
ttgacggtggctccaccatccactagtactttatttacccctacgccattgatcttggcctgaataaataaaggcttgagatgcgatttcatcgaaatat |
154 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| || ||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1735723 |
ttgacggtggctccaccatctactagtactttatttacccccacaccatttatcttggcctgaataaataaaggcttaagatgcgatttcatcgaaatat |
1735624 |
T |
|
| Q |
155 |
ctggtttctcgaaaaccgcatgttgcttttccacacagccattattcatgacataatagcacagtggcttgtgagttgctatttcatcgtcgaaatcact |
254 |
Q |
| |
|
|||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||| ||||||||||| || |||||| |||| ||||| |
|
|
| T |
1735623 |
ctggcttctcgaaaaccgcatgttgttcttccacacagccattattcatgacataatagcatagtggtttgtgagttgccatctcatcgacgaagtcact |
1735524 |
T |
|
| Q |
255 |
ttcctcttcattaatctctgcccggacatcgtattcctcaggcaggatagaaaccacatt |
314 |
Q |
| |
|
||| |||||||||| |||| | |||||||||||||| |||||| ||| ||||||||||| |
|
|
| T |
1735523 |
ttcgacttcattaatatctgactggacatcgtattccacaggcaagatggaaaccacatt |
1735464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 22348479 - 22348794
Alignment:
| Q |
1 |
ttcaaatcggagtcatagagtccaatttttccgagaaaagattgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgc |
100 |
Q |
| |
|
|||||||| || ||||||||||| || ||||| || || |||||||| ||||||||||| |||||||| ||||| |||| ||||| ||||| | |||| |
|
|
| T |
22348479 |
ttcaaatcagaatcatagagtccgatctttcccaggaatgattgagggagcaagttgactgtggctcctccatcaactaacactttgtttactcaaacgc |
22348578 |
T |
|
| Q |
101 |
cattgatcttggcctgaataaataaaggcttgagatgcgatttcatcgaaatatctggtttctcgaaaaccgcatgttgcttttccacacagccattatt |
200 |
Q |
| |
|
||||||| || || ||||| || ||||||||||||||| | ||||| ||| |||||||||| || || || |||||||| | || ||||| |||||||| |
|
|
| T |
22348579 |
cattgattttagcttgaatgaacaaaggcttgagatgcaacttcattgaagtatctggtttttcaaagacagcatgttgttcctctacacaaccattatt |
22348678 |
T |
|
| Q |
201 |
catgacataatagcacagtggcttgtgagttgctatttcatcgtcgaaatcactttcctcttcattaatctctgcccggacatcgtattcctcaggcagg |
300 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||| ||||| ||| |||| |||||||| ||||||||| |||| | | || ||||||| | |||| ||| |
|
|
| T |
22348679 |
cataacataatagcatagtggcttgtgagttgccatttcgtcgacgaagtcactttcaacttcattaacttctgactgaacgtcgtatttcacaggtagg |
22348778 |
T |
|
| Q |
301 |
atagaaaccacattgc |
316 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
22348779 |
atcgaaaccacattgc |
22348794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 58 - 224
Target Start/End: Complemental strand, 22068184 - 22068018
Alignment:
| Q |
58 |
acggtggctccaccatccactagtactttatttacccctacgccattgatcttggcctgaataaataaaggcttgagatgcgatttcatcgaaatatctg |
157 |
Q |
| |
|
||||||||||||||||| |||| || ||||| || || |||||||| |||||||| |||||||| |||||||| |||||| ||||||| || ||||| |
|
|
| T |
22068184 |
acggtggctccaccatcaactaacaccttattcactcccacgccatttatcttggcttgaataaacaaaggcttaagatgcagtttcatcaaagcatctg |
22068085 |
T |
|
| Q |
158 |
gtttctcgaaaaccgcatgttgcttttccacacagccattattcatgacataatagcacagtggctt |
224 |
Q |
| |
|
|| | || ||||| ||||| |||| ||| ||||||||||| ||||||||||||||||| | |||||| |
|
|
| T |
22068084 |
gtctttcaaaaacggcatgctgctcttcaacacagccattgttcatgacataatagcataatggctt |
22068018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 137
Target Start/End: Complemental strand, 15914599 - 15914499
Alignment:
| Q |
37 |
aaagattgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgccattgatcttggcctgaataaataaaggcttgagat |
136 |
Q |
| |
|
||||||||||||||||| || | || || |||||||| || || ||||||||||| || |||||||| | || || ||||| || ||||||||||||| |
|
|
| T |
15914599 |
aaagattgaggcagcaaattcatagtagcaccaccatctaccaggactttatttactccaacgccattcactttagcttgaatgaacaaaggcttgagat |
15914500 |
T |
|
| Q |
137 |
g |
137 |
Q |
| |
|
| |
|
|
| T |
15914499 |
g |
15914499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 69923 - 69608
Alignment:
| Q |
1 |
ttcaaatcggagtcatagagtccaatttttccgagaaaagattgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgc |
100 |
Q |
| |
|
||||| || |||||||| |||||||||||||| ||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
69923 |
ttcaagtcagagtcatacagtccaatttttcccagaaatgattgaggaagcaggttgacggtggctccaccatccactagtactttatttacccctacgc |
69824 |
T |
|
| Q |
101 |
cattgatcttggcctgaataaataaaggcttgagatgcgatttcatcgaaatatctggtttctcgaaaaccgcatgttgcttttccacacagccattatt |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||| ||||| || | |||||||| ||| ||||| |||||||| |
|
|
| T |
69823 |
cgttgatcttggcctgaataaataaaggcttgaggtgcgacttcatcgaagtatctggtttttcgaagactggatgttgctcttctacacaaccattatt |
69724 |
T |
|
| Q |
201 |
catgacataatagcacagtggcttgtgagttgctatttcatcgtcgaaatcactttcctcttcattaatctctgcccggacatcgtattcctcaggcagg |
300 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||| ||||||||| |||||||||||||| |||| ||||| |||| | | |||||||||||| ||| || |
|
|
| T |
69723 |
catgacataatagtacaatggcttgtgagttgccatttcatcgacgaaatcactttccacttcgttaatttctgactgaacatcgtattccataggtagt |
69624 |
T |
|
| Q |
301 |
atagaaaccacattgc |
316 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
69623 |
atagaaaccacattgc |
69608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 41380113 - 41380410
Alignment:
| Q |
1 |
ttcaaatcggagtcatagagtccaatttttccgagaaaagattgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgc |
100 |
Q |
| |
|
||||| || |||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || | |
|
|
| T |
41380113 |
ttcaagtcagagtcatagagtcctatttttcccatgaaagattgaggcagcaagttgacggtggctccaccatctactagtactttatttacccccacac |
41380212 |
T |
|
| Q |
101 |
cattgatcttggcctgaataaataaaggcttgagatgcgatttcatcgaaatatctggtttctcgaaaaccgcatgttgcttttccacacagccattatt |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| || ||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
41380213 |
catttatcttggcctgaataaataaaggcttaagatgtgatttcatcgaaatatctggcttttcgaaaaccgcatgttgttcttccacacagccattatt |
41380312 |
T |
|
| Q |
201 |
catgacataatagcacagtggcttgtgagttgctatttcatcgtcgaaatcactttcctcttcattaatctctgcccggacatcgtattcctcaggca |
298 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| || |||||| |||| |||||||| |||||||||| | || | |||||||||||||| |||||| |
|
|
| T |
41380313 |
catgacataatagcacagtggtttgtgagttgccatctcatcgacgaagtcactttcgacttcattaatttttgactggacatcgtattccacaggca |
41380410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 172 - 316
Target Start/End: Original strand, 22805724 - 22805868
Alignment:
| Q |
172 |
gcatgttgcttttccacacagccattattcatgacataatagcacagtggcttgtgagttgctatttcatcgtcgaaatcactttcctcttcattaatct |
271 |
Q |
| |
|
|||||||| | ||| ||||| |||||||||||||||||||| || ||||||||||| ||||| ||||| ||| ||| |||||||| ||||||||| | |
|
|
| T |
22805724 |
gcatgttgttcttctacacaaccattattcatgacataataacatagtggcttgtgtgttgccatttcgtcgacgatgtcactttcaacttcattaactt |
22805823 |
T |
|
| Q |
272 |
ctgcccggacatcgtattcctcaggcaggatagaaaccacattgc |
316 |
Q |
| |
|
||| | | || ||||||||| |||| ||||| || |||||||||| |
|
|
| T |
22805824 |
ctgactgaacgtcgtattccacaggtaggattgagaccacattgc |
22805868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 22804487 - 22804605
Alignment:
| Q |
1 |
ttcaaatcggagtcatagagtccaatttttccgagaaaagattgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgc |
100 |
Q |
| |
|
|||||||| || ||||||||||| || ||||| || || |||||||| |||| |||||| |||||||||||||| |||| || |||||||| || |||| |
|
|
| T |
22804487 |
ttcaaatcagaatcatagagtccgatctttcccaggaatgattgagggagcaggttgaccgtggctccaccatcaactaacaccttatttactccaacgc |
22804586 |
T |
|
| Q |
101 |
cattgatcttggcctgaat |
119 |
Q |
| |
|
|||||||||| || ||||| |
|
|
| T |
22804587 |
cattgatcttagcttgaat |
22804605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 160; Significance: 3e-85; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 13 - 316
Target Start/End: Complemental strand, 22638785 - 22638482
Alignment:
| Q |
13 |
tcatagagtccaatttttccgagaaaagattgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgccattgatcttgg |
112 |
Q |
| |
|
|||||||||||||||||||| || || |||||||| || |||||||| || |||||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
22638785 |
tcatagagtccaatttttcccaggaatgattgagggagtaagttgactgtagctccaccatccactaacactttatttacccccacgccattgatcttgg |
22638686 |
T |
|
| Q |
113 |
cctgaataaataaaggcttgagatgcgatttcatcgaaatatctggtttctcgaaaaccgcatgttgcttttccacacagccattattcatgacataata |
212 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||| ||| | |||||||| || || || |||||||||| ||| ||||| |||||||||||||||||||| |
|
|
| T |
22638685 |
cctgaataaataaaggcttgagatgcaacttcattgaagtgtctggtttttcaaagactgcatgttgctcttctacacaaccattattcatgacataata |
22638586 |
T |
|
| Q |
213 |
gcacagtggcttgtgagttgctatttcatcgtcgaaatcactttcctcttcattaatctctgcccggacatcgtattcctcaggcaggatagaaaccaca |
312 |
Q |
| |
|
||| ||||||||||||||||| ||||||||| ||||||||||||| |||| ||||| |||| | | || ||||||||| | || ||||||||||||||| |
|
|
| T |
22638585 |
gcatagtggcttgtgagttgccatttcatcgacgaaatcactttcaacttcgttaatttctgactgaacgtcgtattccaccggtaggatagaaaccaca |
22638486 |
T |
|
| Q |
313 |
ttgc |
316 |
Q |
| |
|
|||| |
|
|
| T |
22638485 |
ttgc |
22638482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 13 - 316
Target Start/End: Original strand, 23200356 - 23200659
Alignment:
| Q |
13 |
tcatagagtccaatttttccgagaaaagattgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgccattgatcttgg |
112 |
Q |
| |
|
|||||||||||||||||||| || || |||||||| || | |||||| || |||||||||||||||| |||||||||||||| ||||||||||| |||| |
|
|
| T |
23200356 |
tcatagagtccaatttttcccaggaatgattgagggagtaggttgactgtagctccaccatccactaacactttatttacccccacgccattgattttgg |
23200455 |
T |
|
| Q |
113 |
cctgaataaataaaggcttgagatgcgatttcatcgaaatatctggtttctcgaaaaccgcatgttgcttttccacacagccattattcatgacataata |
212 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||| | |||||||| || || || |||||||||| ||| ||||| |||||||||||||||||||| |
|
|
| T |
23200456 |
cctgaataaataaaggcttgagatgcaacttcatcgaagtgtctggtttttcaaagactgcatgttgctcttctacacaaccattattcatgacataata |
23200555 |
T |
|
| Q |
213 |
gcacagtggcttgtgagttgctatttcatcgtcgaaatcactttcctcttcattaatctctgcccggacatcgtattcctcaggcaggatagaaaccaca |
312 |
Q |
| |
|
||| ||||| ||||||||||| ||||||||| ||||||||||||| |||| ||||| |||| | | || ||||||||| | || ||||||||||||||| |
|
|
| T |
23200556 |
gcatagtggtttgtgagttgccatttcatcgacgaaatcactttcaacttcgttaatttctgactgaacgtcgtattccaccggtaggatagaaaccaca |
23200655 |
T |
|
| Q |
313 |
ttgc |
316 |
Q |
| |
|
|||| |
|
|
| T |
23200656 |
ttgc |
23200659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 23625973 - 23626288
Alignment:
| Q |
1 |
ttcaaatcggagtcatagagtccaatttttccgagaaaagattgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgc |
100 |
Q |
| |
|
|||||||| || ||||||| |||||| ||||| || || |||| ||| |||| |||||| ||||| |||||||| |||| ||||||||||| ||| ||| |
|
|
| T |
23625973 |
ttcaaatcagaatcatagattccaatctttcccaggaatgattaaggaagcaggttgactgtggccccaccatcaactaacactttatttactccttcgc |
23626072 |
T |
|
| Q |
101 |
cattgatcttggcctgaataaataaaggcttgagatgcgatttcatcgaaatatctggtttctcgaaaaccgcatgttgcttttccacacagccattatt |
200 |
Q |
| |
|
||||||| ||||| ||||| |||||||||||||||||||| ||||||||| | | || ||| || || || |||||||||| ||| ||||| || ||||| |
|
|
| T |
23626073 |
cattgattttggcttgaatgaataaaggcttgagatgcgacttcatcgaagtgtttgatttttcaaagactgcatgttgctcttctacacaaccgttatt |
23626172 |
T |
|
| Q |
201 |
catgacataatagcacagtggcttgtgagttgctatttcatcgtcgaaatcactttcctcttcattaatctctgcccggacatcgtattcctcaggcagg |
300 |
Q |
| |
|
||||||||||||||| || |||||||||||||| ||||||||| ||||||||||||| |||| ||||| |||| | | || ||||||||| | || ||| |
|
|
| T |
23626173 |
catgacataatagcatagcggcttgtgagttgccatttcatcgacgaaatcactttcaacttcgttaatttctgactgaacgtcgtattccaccggtagg |
23626272 |
T |
|
| Q |
301 |
atagaaaccacattgc |
316 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
23626273 |
atagaaaccacattgc |
23626288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 24912375 - 24912109
Alignment:
| Q |
1 |
ttcaaatcggagtcatagagtccaatttttccgagaaaagattgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgc |
100 |
Q |
| |
|
|||||||| || |||||||||| || ||||| || || |||||||| |||| |||||| |||||||||||||| |||| || |||||||| || |||| |
|
|
| T |
24912375 |
ttcaaatcagaatcatagagtctgatctttcccaggaatgattgagggagcaggttgaccgtggctccaccatcaactaacaccttatttactccaacgc |
24912276 |
T |
|
| Q |
101 |
cattgatcttggcctgaataaataaaggcttgagatgcgatttcatcgaaatatctggtttctcgaaaaccgcatgttgcttttccacacagccattatt |
200 |
Q |
| |
|
|||| ||||| || ||||| || |||||||| |||||| | ||||||||| ||||||||| || || || |||||||| | ||| ||||| |||||||| |
|
|
| T |
24912275 |
catttatcttagcttgaatgaacaaaggcttaagatgc-aattcatcgaagcatctggtttttcaaagacagcatgttgttcttctacacaaccattatt |
24912177 |
T |
|
| Q |
201 |
catgacataatagcacagtggcttgtgagttgctatttcatcgtcgaaatcactttcctcttcattaa |
268 |
Q |
| |
|
|||||||||||| || ||||||||||| || || ||||| || |||| |||||||| ||||||||| |
|
|
| T |
24912176 |
catgacataataacatagtggcttgtgcgtcgccatttcgtcaacgaagtcactttcaacttcattaa |
24912109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 30101 - 29786
Alignment:
| Q |
1 |
ttcaaatcggagtcatagagtccaatttttccgagaaaagattgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgc |
100 |
Q |
| |
|
|||||||| || |||||||||||||| ||||| || || |||||||| |||| |||||| |||||||||||||| |||| |||||||||||| | |||| |
|
|
| T |
30101 |
ttcaaatcagaatcatagagtccaatctttcccaggaatgattgagggagcaggttgactgtggctccaccatcaactaacactttatttacctccacgc |
30002 |
T |
|
| Q |
101 |
cattgatcttggcctgaataaataaaggcttgagatgcgatttcatcgaaatatctggtttctcgaaaaccgcatgttgcttttccacacagccattatt |
200 |
Q |
| |
|
||||||| || || |||||||||||||||||||||||||| ||||||||| | |||||||| || || || ||||| |||| ||| ||| | |||||||| |
|
|
| T |
30001 |
cattgattttagcttgaataaataaaggcttgagatgcgacttcatcgaagtgtctggtttttctaagactgcatgatgctcttctacataaccattatt |
29902 |
T |
|
| Q |
201 |
catgacataatagcacagtggcttgtgagttgctatttcatcgtcgaaatcactttcctcttcattaatctctgcccggacatcgtattcctcaggcagg |
300 |
Q |
| |
|
||||||||||||||| |||||||||||| || | ||||||||| ||||||||||||| |||||||||| |||| | | || ||||||||| | || ||| |
|
|
| T |
29901 |
catgacataatagcatagtggcttgtgaatttccatttcatcgacgaaatcactttcaacttcattaatttctgactgaacgtcgtattccactggtagg |
29802 |
T |
|
| Q |
301 |
atagaaaccacattgc |
316 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
29801 |
atagaaaccacattgc |
29786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 11840 - 11525
Alignment:
| Q |
1 |
ttcaaatcggagtcatagagtccaatttttccgagaaaagattgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgc |
100 |
Q |
| |
|
|||||||| || || |||| |||||| ||||| || || |||||||| |||| |||||| ||||||||||||||||||| ||||||||||| || |||| |
|
|
| T |
11840 |
ttcaaatcagaatcgtagactccaatctttcccaggaatgattgaggaagcaggttgactgtggctccaccatccactaacactttatttactcccacgc |
11741 |
T |
|
| Q |
101 |
cattgatcttggcctgaataaataaaggcttgagatgcgatttcatcgaaatatctggtttctcgaaaaccgcatgttgcttttccacacagccattatt |
200 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||| ||||||||| | |||||||| || || || |||||||||| ||| ||||| | |||||| |
|
|
| T |
11740 |
cattgattttggcttgaataaataaaggcttgagatgcgacttcatcgaagtgtctggtttttcaaagactgcatgttgctcttctacacaactattatt |
11641 |
T |
|
| Q |
201 |
catgacataatagcacagtggcttgtgagttgctatttcatcgtcgaaatcactttcctcttcattaatctctgcccggacatcgtattcctcaggcagg |
300 |
Q |
| |
|
||||||||||||||| |||||||||| | |||| ||||||||| ||||||||||||| |||| ||||| |||| | | || || |||||| ||| ||| |
|
|
| T |
11640 |
catgacataatagcatagtggcttgttaattgccatttcatcgacgaaatcactttcaacttcgttaatttctgactgaacgtcatattccataggtagg |
11541 |
T |
|
| Q |
301 |
atagaaaccacattgc |
316 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
11540 |
atagaaaccacattgc |
11525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0130 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold0130
Description:
Target: scaffold0130; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 13 - 316
Target Start/End: Complemental strand, 43612 - 43309
Alignment:
| Q |
13 |
tcatagagtccaatttttccgagaaaagattgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgccattgatcttgg |
112 |
Q |
| |
|
|||||||||||||| ||||| | || |||||||| || | |||||| || |||||||||||||||| |||||||||||||| | |||||||||||||| |
|
|
| T |
43612 |
tcatagagtccaatctttcccaagaatgattgagggagtaggttgactgtagctccaccatccactaacactttatttacccccatgccattgatcttgg |
43513 |
T |
|
| Q |
113 |
cctgaataaataaaggcttgagatgcgatttcatcgaaatatctggtttctcgaaaaccgcatgttgcttttccacacagccattattcatgacataata |
212 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||| | |||||||| || || || |||||||||| ||| ||||| |||||||||||||||||||| |
|
|
| T |
43512 |
cctgaataaataaaggcttgagatgcaacttcatcgaagtgtctggtttttcaaagactgcatgttgctcttctacacaaccattattcatgacataata |
43413 |
T |
|
| Q |
213 |
gcacagtggcttgtgagttgctatttcatcgtcgaaatcactttcctcttcattaatctctgcccggacatcgtattcctcaggcaggatagaaaccaca |
312 |
Q |
| |
|
||| || | |||||||||| | ||||||||| ||||||||||||| |||| ||||| |||| | | || ||||||||| | | ||||||||||||||| |
|
|
| T |
43412 |
gcatagcgccttgtgagtttccatttcatcgacgaaatcactttcaacttcgttaatttctgactgaacgtcgtattccaccagtaggatagaaaccaca |
43313 |
T |
|
| Q |
313 |
ttgc |
316 |
Q |
| |
|
|||| |
|
|
| T |
43312 |
ttgc |
43309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 13 - 316
Target Start/End: Original strand, 126286 - 126589
Alignment:
| Q |
13 |
tcatagagtccaatttttccgagaaaagattgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgccattgatcttgg |
112 |
Q |
| |
|
|||||||||||||| ||||| || || |||||||| || | |||||| || |||||||||||||||| |||||||||||||| | ||||||||||||| |
|
|
| T |
126286 |
tcatagagtccaatctttcccaggaatgattgagggagtaggttgactgtagctccaccatccactaacactttatttacccccaaaccattgatcttgg |
126385 |
T |
|
| Q |
113 |
cctgaataaataaaggcttgagatgcgatttcatcgaaatatctggtttctcgaaaaccgcatgttgcttttccacacagccattattcatgacataata |
212 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||| ||| | |||||||| || || || |||||||||| ||| ||||| |||||||||||||||||||| |
|
|
| T |
126386 |
cctgaataaataaaggcttgagatgcaacttcatagaagtgtctggtttttcaaagactgcatgttgctcttctacacaaccattattcatgacataata |
126485 |
T |
|
| Q |
213 |
gcacagtggcttgtgagttgctatttcatcgtcgaaatcactttcctcttcattaatctctgcccggacatcgtattcctcaggcaggatagaaaccaca |
312 |
Q |
| |
|
||| ||||| ||||||||||| |||| |||| ||||||||||||| |||| ||||| |||| | || ||||||||| | || ||||||||||||||| |
|
|
| T |
126486 |
gcatagtggattgtgagttgccatttaatcgacgaaatcactttcaacttcgttaatttctgactaaacgtcgtattccaccggtaggatagaaaccaca |
126585 |
T |
|
| Q |
313 |
ttgc |
316 |
Q |
| |
|
|||| |
|
|
| T |
126586 |
ttgc |
126589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 179005 - 179231
Alignment:
| Q |
1 |
ttcaaatcggagtcatagagtccaatttttccgagaaaagattgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgc |
100 |
Q |
| |
|
||||||| ||| ||| |||||||||||||||| || || ||| | || || || ||||| ||||| || ||||| || || ||||||||||| ||||| | |
|
|
| T |
179005 |
ttcaaattggaatcaaagagtccaatttttcccaggaaggataggggtagtaaattgacagtggccccgccatcaaccagcactttatttactcctacac |
179104 |
T |
|
| Q |
101 |
cattgatcttggcctgaataaataaaggcttgagatgcgatttcatcgaaatatctggtttctcgaaaaccgcatgttgcttttccacacagccattatt |
200 |
Q |
| |
|
|||| |||||||| ||||||||||| || ||||| |||| |||||||| ||||||| | | ||| || |||||||| | ||| ||||| ||||| || |
|
|
| T |
179105 |
catttatcttggcttgaataaataacggtttgaggtgcggcctcatcgaagcatctggtctttggaatacagcatgttgatcttcgacacaaccattgtt |
179204 |
T |
|
| Q |
201 |
catgacataatagcacagtggcttgtg |
227 |
Q |
| |
|
|| ||||||||||| ||||||||||| |
|
|
| T |
179205 |
tataacataatagcatagtggcttgtg |
179231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 13 - 316
Target Start/End: Original strand, 19034905 - 19035208
Alignment:
| Q |
13 |
tcatagagtccaatttttccgagaaaagattgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgccattgatcttgg |
112 |
Q |
| |
|
|||||||||||||| ||||| || || |||||||| || | ||||| |||||||||||||| |||| |||||||||||||| ||||||||||| || | |
|
|
| T |
19034905 |
tcatagagtccaatctttcccaggaatgattgagggagtaggttgattgtggctccaccatcaactaacactttatttacccccacgccattgattttag |
19035004 |
T |
|
| Q |
113 |
cctgaataaataaaggcttgagatgcgatttcatcgaaatatctggtttctcgaaaaccgcatgttgcttttccacacagccattattcatgacataata |
212 |
Q |
| |
|
||||||||||||||||||||| |||| | ||||||||| |||||||||| || || || |||||||||| ||| ||||| |||||||||||||||||||| |
|
|
| T |
19035005 |
cctgaataaataaaggcttgatatgcaacttcatcgaagtatctggtttttcaaagactgcatgttgctcttctacacaaccattattcatgacataata |
19035104 |
T |
|
| Q |
213 |
gcacagtggcttgtgagttgctatttcatcgtcgaaatcactttcctcttcattaatctctgcccggacatcgtattcctcaggcaggatagaaaccaca |
312 |
Q |
| |
|
||| | |||||||||| |||| ||||||||| |||| |||||||| |||||||||| |||| | | || ||||||||| |||| ||||| || |||||| |
|
|
| T |
19035105 |
gcataatggcttgtgaattgccatttcatcgacgaagtcactttcaacttcattaatttctgactgcacgtcgtattccacaggtaggatcgagaccaca |
19035204 |
T |
|
| Q |
313 |
ttgc |
316 |
Q |
| |
|
|||| |
|
|
| T |
19035205 |
ttgc |
19035208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 13 - 316
Target Start/End: Complemental strand, 23435572 - 23435269
Alignment:
| Q |
13 |
tcatagagtccaatttttccgagaaaagattgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgccattgatcttgg |
112 |
Q |
| |
|
||||||||||||||| |||| || || |||||||| || | ||||| || |||| ||||||||||| |||||||||||||| |||||||| ||||||| |
|
|
| T |
23435572 |
tcatagagtccaattgttcccaggaatgattgagggagtaggttgattgtagctctaccatccactaacactttatttacccccacgccattaatcttgg |
23435473 |
T |
|
| Q |
113 |
cctgaataaataaaggcttgagatgcgatttcatcgaaatatctggtttctcgaaaaccgcatgttgcttttccacacagccattattcatgacataata |
212 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||| | |||||||| || || || |||||||||| ||| ||||| |||||||||||||||||||| |
|
|
| T |
23435472 |
cctgaataaataaaggcttgagatgcaacttcatcgacgtgtctggtttttcaaagactgcatgttgctcttctacacaaccattattcatgacataata |
23435373 |
T |
|
| Q |
213 |
gcacagtggcttgtgagttgctatttcatcgtcgaaatcactttcctcttcattaatctctgcccggacatcgtattcctcaggcaggatagaaaccaca |
312 |
Q |
| |
|
||| || | ||||||||| | ||||||||| ||||||||||||| |||| ||||| |||| | | || ||||||||| | | | ||||||||||||| |
|
|
| T |
23435372 |
gcatagagaattgtgagttaccatttcatcgacgaaatcactttcaacttcgttaatttctgactgaacgtcgtattccaccagtaagatagaaaccaca |
23435273 |
T |
|
| Q |
313 |
ttgc |
316 |
Q |
| |
|
|||| |
|
|
| T |
23435272 |
ttgc |
23435269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0319
Description:
Target: scaffold0319; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 316
Target Start/End: Complemental strand, 10104 - 9804
Alignment:
| Q |
16 |
tagagtccaatttttccgagaaaagattgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgccattgatcttggcct |
115 |
Q |
| |
|
|||| |||||| ||||| || || ||||| || |||| ||||| |||||||||||||| |||| ||||||||||| || ||||||||||| ||||| | |
|
|
| T |
10104 |
tagactccaatctttcccaggaatgattggggaagcagattgactgtggctccaccatcaactaacactttatttactcccacgccattgattttggctt |
10005 |
T |
|
| Q |
116 |
gaataaataaaggcttgagatgcgatttcatcgaaatatctggtttctcgaaaaccgcatgttgcttttccacacagccattattcatgacataatagca |
215 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||| |||||||||| || || || |||||||||| ||| || || || ||||||||||||||||| || |
|
|
| T |
10004 |
gaataaataaaggcttgagatgcgacttcattgaagtatctggtttttcaaagactgcatgttgctcttctacgcaaccgttattcatgacataataaca |
9905 |
T |
|
| Q |
216 |
cagtggcttgtgagttgctatttcatcgtcgaaatcactttcctcttcattaatctctgcccggacatcgtattcctcaggcaggatagaaaccacattg |
315 |
Q |
| |
|
|||||||||||| |||| ||||| ||| ||||||||||||| |||| ||||| |||| | || ||||||||| |||| |||||||||||||||||| |
|
|
| T |
9904 |
tagtggcttgtgaattgccatttcgtcgacgaaatcactttcaacttcgttaatttctgattgaacgtcgtattccacaggtaggatagaaaccacattg |
9805 |
T |
|
| Q |
316 |
c |
316 |
Q |
| |
|
| |
|
|
| T |
9804 |
c |
9804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 4 - 316
Target Start/End: Original strand, 13289085 - 13289397
Alignment:
| Q |
4 |
aaatcggagtcatagagtccaatttttccgagaaaagattgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgccat |
103 |
Q |
| |
|
||||| || ||||||| |||||| ||||| || || |||||||| || ||||||| ||||||||||||| |||| ||||||||||| || ||||||| |
|
|
| T |
13289085 |
aaatcagaatcatagattccaatctttcccaggaatgattgaggaagaaagttgaatatggctccaccatcaactaacactttatttactcccacgccat |
13289184 |
T |
|
| Q |
104 |
tgatcttggcctgaataaataaaggcttgagatgcgatttcatcgaaatatctggtttctcgaaaaccgcatgttgcttttccacacagccattattcat |
203 |
Q |
| |
|
|||| ||||| ||||||||||||| |||||||||||| ||||||||| | |||||||| || || || |||||||||| ||| ||||| || |||||||| |
|
|
| T |
13289185 |
tgattttggcttgaataaataaagacttgagatgcgacttcatcgaagtgtctggtttttcaaagactgcatgttgctcttctacacaaccgttattcat |
13289284 |
T |
|
| Q |
204 |
gacataatagcacagtggcttgtgagttgctatttcatcgtcgaaatcactttcctcttcattaatctctgcccggacatcgtattcctcaggcaggata |
303 |
Q |
| |
|
|||||||||||| |||||||||||| ||| ||||||||| ||||||||||||| |||| ||||| |||| | || || |||||| ||| |||||| |
|
|
| T |
13289285 |
gacataatagcatagtggcttgtgaattgacatttcatcgacgaaatcactttcaacttcgttaatttctgaatgaacgtcatattccaaaggtaggata |
13289384 |
T |
|
| Q |
304 |
gaaaccacattgc |
316 |
Q |
| |
|
||||||||||||| |
|
|
| T |
13289385 |
gaaaccacattgc |
13289397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 14772282 - 14772597
Alignment:
| Q |
1 |
ttcaaatcggagtcatagagtccaatttttccgagaaaagattgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgc |
100 |
Q |
| |
|
|||||||| || ||||||||||| || ||||| || || |||||||| |||| |||||| |||||||||||||| |||| || |||||||| || |||| |
|
|
| T |
14772282 |
ttcaaatcagaatcatagagtccgatctttcccaggaatgattgagggagcaggttgaccgtggctccaccatcgactaacaccttatttactccaacgc |
14772381 |
T |
|
| Q |
101 |
cattgatcttggcctgaataaataaaggcttgagatgcgatttcatcgaaatatctggtttctcgaaaaccgcatgttgcttttccacacagccattatt |
200 |
Q |
| |
|
|||||||||| || ||||| ||||||||||| |||||| ||||||||| |||||||| || || || ||||||| | ||| ||||| |||||||| |
|
|
| T |
14772382 |
cattgatcttagcttgaatgaataaaggcttaagatgcagcttcatcgaagcgtctggtttttcaaagacaacatgttgttcttctacacaaccattatt |
14772481 |
T |
|
| Q |
201 |
catgacataatagcacagtggcttgtgagttgctatttcatcgtcgaaatcactttcctcttcattaatctctgcccggacatcgtattcctcaggcagg |
300 |
Q |
| |
|
|||||||||||| || ||||||||||| ||||| ||||| ||| |||| |||||||| ||||||||| |||| | | || ||||||||| |||| ||| |
|
|
| T |
14772482 |
catgacataataacatagtggcttgtgtgttgccatttcgtcgacgaagtcactttcaacttcattaacttctgactgaacgtcgtattccacaggtagg |
14772581 |
T |
|
| Q |
301 |
atagaaaccacattgc |
316 |
Q |
| |
|
|| || |||||||||| |
|
|
| T |
14772582 |
atcgagaccacattgc |
14772597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 4 - 311
Target Start/End: Original strand, 37311 - 37618
Alignment:
| Q |
4 |
aaatcggagtcatagagtccaatttttccgagaaaagattgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgccat |
103 |
Q |
| |
|
||||| || ||||| | |||||| ||||| || ||||||||||| || | |||||| ||||||||||||| |||| ||||||||||| || ||||||| |
|
|
| T |
37311 |
aaatcagaatcataaattccaatctttcccaggaaagattgaggaagaaggttgactatggctccaccatcaactaacactttatttactcccacgccat |
37410 |
T |
|
| Q |
104 |
tgatcttggcctgaataaataaaggcttgagatgcgatttcatcgaaatatctggtttctcgaaaaccgcatgttgcttttccacacagccattattcat |
203 |
Q |
| |
|
|||| ||||| |||||||| ||||||||||||||||| ||||||||| | |||||||| || || || |||||||||| ||||||||| ||||||||||| |
|
|
| T |
37411 |
tgattttggcttgaataaacaaaggcttgagatgcgacttcatcgaagtgtctggtttttcaaatactgcatgttgctcttccacacatccattattcat |
37510 |
T |
|
| Q |
204 |
gacataatagcacagtggcttgtgagttgctatttcatcgtcgaaatcactttcctcttcattaatctctgcccggacatcgtattcctcaggcaggata |
303 |
Q |
| |
|
||||||||| || ||||| |||||||| || ||||| ||| ||||||||||||| |||| ||||| |||| | || || |||||| |||| |||||| |
|
|
| T |
37511 |
gacataataacatagtggtttgtgagtagccatttcgtcgacgaaatcactttcgacttcgttaatttctgattgaacgtcatattccacaggtaggata |
37610 |
T |
|
| Q |
304 |
gaaaccac |
311 |
Q |
| |
|
|| ||||| |
|
|
| T |
37611 |
gacaccac |
37618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0241 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold0241
Description:
Target: scaffold0241; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 11953 - 11638
Alignment:
| Q |
1 |
ttcaaatcggagtcatagagtccaatttttccgagaaaagattgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgc |
100 |
Q |
| |
|
|||||||| || ||||||||||| || ||||| || || |||||||| |||| |||||| |||||||||||||| |||| ||||||||||| || |||| |
|
|
| T |
11953 |
ttcaaatcagaatcatagagtccgatctttcccaggaatgattgagggagcaggttgactgtggctccaccatcaactaacactttatttactcccacgc |
11854 |
T |
|
| Q |
101 |
cattgatcttggcctgaataaataaaggcttgagatgcgatttcatcgaaatatctggtttctcgaaaaccgcatgttgcttttccacacagccattatt |
200 |
Q |
| |
|
||||||| || || ||||| || |||||||||||||| | ||||| ||| |||||||||| || || || |||||||| | ||| ||||| |||||||| |
|
|
| T |
11853 |
cattgatttttgcttgaatgaacaaaggcttgagatgtaacttcattgaagtatctggtttttcaaacacagcatgttgttcttctacacaaccattatt |
11754 |
T |
|
| Q |
201 |
catgacataatagcacagtggcttgtgagttgctatttcatcgtcgaaatcactttcctcttcattaatctctgcccggacatcgtattcctcaggcagg |
300 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||| || |||| |||||||| ||||||||| || | | | || ||||||||| |||| ||| |
|
|
| T |
11753 |
catgacataatagcatagtggcttgtgagttgccatttcgtcaacgaagtcactttcaacttcattaacttccgactgaacgtcgtattccacaggtagg |
11654 |
T |
|
| Q |
301 |
atagaaaccacattgc |
316 |
Q |
| |
|
|| || |||||||||| |
|
|
| T |
11653 |
attgagaccacattgc |
11638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 26687 - 26414
Alignment:
| Q |
1 |
ttcaaatcggagtcatagagtccaatttttccgagaaaagattgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgc |
100 |
Q |
| |
|
|||||||| || ||||||| |||||| ||||| || || |||||||| |||| |||||| |||||||| ||||| |||| ||||||||||| | |||| |
|
|
| T |
26687 |
ttcaaatcagaatcatagattccaatctttcccaggaatgattgaggaagcaggttgactgtggctccgccatcaactaacactttatttactaccacgc |
26588 |
T |
|
| Q |
101 |
cattgatcttggcctgaataaataaaggcttgagatgcgatttcatcgaaatatctggtttctcgaaaaccgcatgttgcttttccacacagccattatt |
200 |
Q |
| |
|
||||||| ||||| |||||||| ||||||||||||||||| || |||||| | |||||||| || || || |||||||||| ||||||||| || ||||| |
|
|
| T |
26587 |
cattgattttggcttgaataaacaaaggcttgagatgcgactttatcgaagtgtctggtttttcaaatactgcatgttgctcttccacacatccgttatt |
26488 |
T |
|
| Q |
201 |
catgacataatagcacagtggcttgtgagttgctatttcatcgtcgaaatcactttcctcttcattaatctctg |
274 |
Q |
| |
|
|||||||||||| || ||||| ||||||||| | ||||| ||| ||||||||||||| |||| ||||| |||| |
|
|
| T |
26487 |
catgacataataacatagtggtttgtgagtttccatttcgtcgacgaaatcactttcgacttcgttaatttctg |
26414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 67448 - 67133
Alignment:
| Q |
1 |
ttcaaatcggagtcatagagtccaatttttccgagaaaagattgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgc |
100 |
Q |
| |
|
|||||||| || ||||||||||| || ||||| || || |||||||| |||| |||||| |||||||||||||| |||| || |||||||| || |||| |
|
|
| T |
67448 |
ttcaaatcagaatcatagagtccgatctttcccaggaatgattgagggagcaggttgaccgtggctccaccatcaactaacaccttatttactccaacgc |
67349 |
T |
|
| Q |
101 |
cattgatcttggcctgaataaataaaggcttgagatgcgatttcatcgaaatatctggtttctcgaaaaccgcatgttgcttttccacacagccattatt |
200 |
Q |
| |
|
|||||||||| || ||||| ||||||||||| |||||| ||||||||| |||||||| || || || ||||||| | ||| ||||| |||||||| |
|
|
| T |
67348 |
cattgatcttagcttgaatgaataaaggcttaagatgcagcttcatcgaagcgtctggtttttcaaagacaacatgttgttcttctacacaaccattatt |
67249 |
T |
|
| Q |
201 |
catgacataatagcacagtggcttgtgagttgctatttcatcgtcgaaatcactttcctcttcattaatctctgcccggacatcgtattcctcaggcagg |
300 |
Q |
| |
|
|||||||||||| || ||||||||||| ||||| ||||| ||| |||| |||||||| ||||||||| |||| | | || ||||||||| |||| ||| |
|
|
| T |
67248 |
catgacataataacatagtggcttgtgtgttgccatttcgtcgacgaagtcactttcaacttcattaacttctgactgaacgtcgtattccacaggtagg |
67149 |
T |
|
| Q |
301 |
atagaaaccacattgc |
316 |
Q |
| |
|
|| || |||||||||| |
|
|
| T |
67148 |
attgagaccacattgc |
67133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 138688 - 139003
Alignment:
| Q |
1 |
ttcaaatcggagtcatagagtccaatttttccgagaaaagattgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgc |
100 |
Q |
| |
|
|||||||| || ||||||||||| || ||||| ||||| |||||||| |||| |||||| |||||||||||||| |||| || |||||||| || || | |
|
|
| T |
138688 |
ttcaaatcagaatcatagagtccgatctttcccagaaatgattgagggagcaggttgacagtggctccaccatcaactaacaccttatttactccaacac |
138787 |
T |
|
| Q |
101 |
cattgatcttggcctgaataaataaaggcttgagatgcgatttcatcgaaatatctggtttctcgaaaaccgcatgttgcttttccacacagccattatt |
200 |
Q |
| |
|
||| |||||| || ||||| || |||||||| |||||| | ||||||||| | ||||| || || || || |||||||| | ||| ||||| | |||||| |
|
|
| T |
138788 |
catcgatcttagcttgaatgaacaaaggcttaagatgcaacttcatcgaagtgtctggcttttcaaagacagcatgttgttcttctacacaactattatt |
138887 |
T |
|
| Q |
201 |
catgacataatagcacagtggcttgtgagttgctatttcatcgtcgaaatcactttcctcttcattaatctctgcccggacatcgtattcctcaggcagg |
300 |
Q |
| |
|
|||||||||||| || ||||||||||| || || ||||| ||| |||| |||||||| ||||||||| |||| | | || |||||||| |||| ||| |
|
|
| T |
138888 |
catgacataataacatagtggcttgtgtgtcgccatttcgtcgacgaagtcactttcaacttcattaacttctgactgaacgtcgtattctacaggtagg |
138987 |
T |
|
| Q |
301 |
atagaaaccacattgc |
316 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
138988 |
attgaaaccacattgc |
139003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 21511469 - 21511202
Alignment:
| Q |
1 |
ttcaaatcggagtcatagagtccaatttttccgagaaaagattgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgc |
100 |
Q |
| |
|
|||||||| || ||||||||||| || ||||| || || |||||||| |||| ||||| |||||||||||||| |||| |||||||| || || |||| |
|
|
| T |
21511469 |
ttcaaatcagaatcatagagtccgatctttcccaggaatgattgagggagcaggttgattgtggctccaccatcaactaacactttattcactcccacgc |
21511370 |
T |
|
| Q |
101 |
cattgatcttggcctgaataaataaaggcttgagatgcgatttcatcgaaatatctggtttctcgaaaaccgcatgttgcttttccacacagccattatt |
200 |
Q |
| |
|
||||||| || || |||||||| ||||| || |||||| | ||||||||| | |||||||| || || || |||||||| | ||| ||||| |||||||| |
|
|
| T |
21511369 |
cattgattttagcttgaataaacaaaggtttaagatgcaacttcatcgaagtgtctggtttttcaaagacggcatgttgttcttctacacaaccattatt |
21511270 |
T |
|
| Q |
201 |
catgacataatagcacagtggcttgtgagttgctatttcatcgtcgaaatcactttcctcttcattaa |
268 |
Q |
| |
|
|| ||| |||||||| ||||||||||||||||| ||||| ||| | |||||||||||| |||| |||| |
|
|
| T |
21511269 |
cacgacgtaatagcatagtggcttgtgagttgccatttcgtcgacaaaatcactttccacttcgttaa |
21511202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 126475 - 126731
Alignment:
| Q |
1 |
ttcaaatcggagtcatagagtccaatttttccgagaaaagattgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgc |
100 |
Q |
| |
|
|||||||| || ||||| ||||| || ||||| || || |||||||| |||| |||||| |||||||||||||| |||| |||||||| || || |||| |
|
|
| T |
126475 |
ttcaaatcagaatcataaagtccgatctttcccaggaatgattgagggagcaggttgactgtggctccaccatcaactaacactttattcactcccacgc |
126574 |
T |
|
| Q |
101 |
cattgatcttggcctgaataaataaaggcttgagatgcgatttcatcgaaatatctggtttctcgaaaaccgcatgttgcttttccacacagccattatt |
200 |
Q |
| |
|
||||||| || || ||||| || |||||||||||||| | ||||| ||| |||||||||| || || || || ||||| | ||| ||||| |||||||| |
|
|
| T |
126575 |
cattgattttagcttgaatgaacaaaggcttgagatgtaacttcattgaagtatctggtttttcaaatacggcgtgttgttcttctacacaaccattatt |
126674 |
T |
|
| Q |
201 |
catgacataatagcacagtggcttgtgagttgctatttcatcgtcgaaatcactttc |
257 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||| ||| ||| |||||||| |
|
|
| T |
126675 |
catgacataatagcatagtggcttgtgagttgccatttcgtcgatgaagtcactttc |
126731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 43 - 136
Target Start/End: Complemental strand, 91592 - 91499
Alignment:
| Q |
43 |
tgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgccattgatcttggcctgaataaataaaggcttgagat |
136 |
Q |
| |
|
||||| |||| |||||| |||||||||||||| |||| ||| ||||| || || |||||||| |||||||| |||||||| |||||||| |||| |
|
|
| T |
91592 |
tgagggagcaggttgacagtggctccaccatcaactaataccttattcactccgacgccatttatcttggcttgaataaacaaaggcttaagat |
91499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 43 - 268
Target Start/End: Complemental strand, 33985 - 33760
Alignment:
| Q |
43 |
tgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgccattgatcttggcctgaataaataaaggcttgagatgcgatt |
142 |
Q |
| |
|
||||| |||| |||||| |||||||||||||| |||| ||| ||||| || || |||||||| |||||||| |||||||| |||||||| |||||| ||| |
|
|
| T |
33985 |
tgagggagcaggttgacagtggctccaccatcaactaataccttattcactcccacgccatttatcttggcttgaataaacaaaggcttaagatgcaatt |
33886 |
T |
|
| Q |
143 |
tcatcgaaatatctggtttctcgaaaaccgcatgttgcttttccacacagccattattcatgacataatagcacagtggcttgtgagttgctatttcatc |
242 |
Q |
| |
|
|||||||| |||||||| || ||||| |||||||| | ||| ||||||||||| ||||||||||||||||| | |||||| || || || ||||| || |
|
|
| T |
33885 |
tcatcgaatcatctggttattcaaaaacagcatgttgttcttcaacacagccattgttcatgacataatagcataatggcttatgtgtcgccatttcgtc |
33786 |
T |
|
| Q |
243 |
gtcgaaatcactttcctcttcattaa |
268 |
Q |
| |
|
| ||| |||||||| ||||||||| |
|
|
| T |
33785 |
ggtgaagtcactttcaacttcattaa |
33760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0656 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0656
Description:
Target: scaffold0656; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 5520 - 5205
Alignment:
| Q |
1 |
ttcaaatcggagtcatagagtccaatttttccgagaaaagattgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgc |
100 |
Q |
| |
|
|||||||| || ||| | ||||| || || || ||||| || ||||| |||| |||||| |||||||||||||| |||| ||| ||||| || || |||| |
|
|
| T |
5520 |
ttcaaatcagaatcacacagtccgatcttccccagaaatgactgagggagcaggttgacagtggctccaccatcaactaataccttattcactccaacgc |
5421 |
T |
|
| Q |
101 |
cattgatcttggcctgaataaataaaggcttgagatgcgatttcatcgaaatatctggtttctcgaaaaccgcatgttgcttttccacacagccattatt |
200 |
Q |
| |
|
|||| ||||| || |||||||| |||||||| ||||| | ||||||||| ||||||||| || || || |||||||| | ||||||||| |||||||| |
|
|
| T |
5420 |
catttatcttagcttgaataaacaaaggcttaagatgtaacttcatcgaagcatctggtttttcaaagacagcatgttgttcttccacacaaccattatt |
5321 |
T |
|
| Q |
201 |
catgacataatagcacagtggcttgtgagttgctatttcatcgtcgaaatcactttcctcttcattaatctctgcccggacatcgtattcctcaggcagg |
300 |
Q |
| |
|
|||||||||||| || |||||||| || || || ||||| || |||| |||||||| ||||||||| |||| | | || ||||||||| |||| || |
|
|
| T |
5320 |
catgacataataacatagtggcttatgcgtagccatttcgtcaacgaagtcactttcaacttcattaacttctgacagaacgtcgtattccacaggtaga |
5221 |
T |
|
| Q |
301 |
atagaaaccacattgc |
316 |
Q |
| |
|
|| || |||||||||| |
|
|
| T |
5220 |
attgataccacattgc |
5205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0107 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0107
Description:
Target: scaffold0107; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 43 - 268
Target Start/End: Complemental strand, 4572 - 4347
Alignment:
| Q |
43 |
tgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgccattgatcttggcctgaataaataaaggcttgagatgcgatt |
142 |
Q |
| |
|
||||| |||| ||||| |||||||||||||| |||| ||| |||||||| || |||||||| ||||| || |||||||| ||||| || ||||| | | |
|
|
| T |
4572 |
tgagggagcaggttgattgtggctccaccatcaactaataccttatttactccaacgccatttatcttagcttgaataaacaaaggattaagatgtaact |
4473 |
T |
|
| Q |
143 |
tcatcgaaatatctggtttctcgaaaaccgcatgttgcttttccacacagccattattcatgacataatagcacagtggcttgtgagttgctatttcatc |
242 |
Q |
| |
|
|||| |||| |||||| || || || || |||||||| | ||| ||||| |||||||||||||||||||| || ||||||||||| ||||| ||||| || |
|
|
| T |
4472 |
tcattgaaacatctggcttttcaaagacagcatgttgttcttctacacaaccattattcatgacataataacatagtggcttgtgtgttgccatttcgtc |
4373 |
T |
|
| Q |
243 |
gtcgaaatcactttcctcttcattaa |
268 |
Q |
| |
|
|||| |||||||| ||||||||| |
|
|
| T |
4372 |
aacgaagtcactttcaacttcattaa |
4347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0362 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0362
Description:
Target: scaffold0362; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 4 - 298
Target Start/End: Complemental strand, 14916 - 14622
Alignment:
| Q |
4 |
aaatcggagtcatagagtccaatttttccgagaaaagattgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgccat |
103 |
Q |
| |
|
|||||||| |||||||||||||| || || | ||| || ||| |||| ||| || |||||||| || || |||| ||||||||||| || ||||||| |
|
|
| T |
14916 |
aaatcggaatcatagagtccaatcttccccaaaaatgaccgagcgagcaggttaacagtggctcccccgtcgactaacactttatttactcccacgccat |
14817 |
T |
|
| Q |
104 |
tgatcttggcctgaataaataaaggcttgagatgcgatttcatcgaaatatctggtttctcgaaaaccgcatgttgcttttccacacagccattattcat |
203 |
Q |
| |
|
| | |||||| |||||||| ||||| ||||||||| ||||||||| ||||||| | || || || |||||||| | || ||||||||||| ||||| |
|
|
| T |
14816 |
ttaccttggcttgaataaacaaaggtttgagatgcagtttcatcgaggcatctggtctttcaaagacagcatgttgttcctcaacacagccattgttcat |
14717 |
T |
|
| Q |
204 |
gacataatagcacagtggcttgtgagttgctatttcatcgtcgaaatcactttcctcttcattaatctctgcccggacatcgtattcctcaggca |
298 |
Q |
| |
|
|||||||||||| | |||||| || || || ||||| ||| ||| |||||||| ||||||||| |||| | | || ||||||||| |||||| |
|
|
| T |
14716 |
gacataatagcataatggcttatgggtggccatttcgtcgatgaagtcactttcaacttcattaacttctgactgaacgtcgtattccacaggca |
14622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0282 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0282
Description:
Target: scaffold0282; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 154 - 316
Target Start/End: Original strand, 5406 - 5568
Alignment:
| Q |
154 |
tctggtttctcgaaaaccgcatgttgcttttccacacagccattattcatgacataatagcacagtggcttgtgagttgctatttcatcgtcgaaatcac |
253 |
Q |
| |
|
|||||||| || || || |||||||| | ||| ||||| |||||||||||||||||||| || ||||||||||| ||||| ||||| ||| |||| |||| |
|
|
| T |
5406 |
tctggtttttcaaagacagcatgttgttcttctacacaaccattattcatgacataataacatagtggcttgtgtgttgccatttcgtcgacgaagtcac |
5505 |
T |
|
| Q |
254 |
tttcctcttcattaatctctgcccggacatcgtattcctcaggcaggatagaaaccacattgc |
316 |
Q |
| |
|
|||| ||||||||| |||| | | || ||||||||| |||| || || || |||||||||| |
|
|
| T |
5506 |
tttcaacttcattaacttctgactgaacgtcgtattccacaggtagaattgagaccacattgc |
5568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0053 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0053
Description:
Target: scaffold0053; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 4 - 138
Target Start/End: Original strand, 41983 - 42117
Alignment:
| Q |
4 |
aaatcggagtcatagagtccaatttttccgagaaaagattgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgccat |
103 |
Q |
| |
|
||||| || ||| |||||||||| ||||| | || ||||||||||| | ||| || |||||||| ||||| ||||| |||||||| || || | ||||| |
|
|
| T |
41983 |
aaatcagaatcaaagagtccaatctttcccaagaatgattgaggcagtaggtttacagtggctccgccatcaactagcactttattcactcccatgccat |
42082 |
T |
|
| Q |
104 |
tgatcttggcctgaataaataaaggcttgagatgc |
138 |
Q |
| |
|
| |||||||| |||||||| ||||||||||||||| |
|
|
| T |
42083 |
ttatcttggcttgaataaacaaaggcttgagatgc |
42117 |
T |
|
Back To:
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Target: scaffold0013 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 149203 - 148930
Alignment:
| Q |
1 |
ttcaaatcggagtcatagagtccaatttttccgagaaaagattgaggcagcaagttgacggtggctccaccatccactagtactttatttacccctacgc |
100 |
Q |
| |
|
|||||||| || ||| ||||||||| |||||| || || ||||| || || || ||||| |||| || ||||| || | ||||||||||| ||||| | |
|
|
| T |
149203 |
ttcaaatcagaatcaaagagtccaaattttcccaggaaggattggggtagtaaattgacattggccccgccatcaaccaacactttatttactcctacac |
149104 |
T |
|
| Q |
101 |
cattgatcttggcctgaataaataaaggcttgagatgcgatttcatcgaaatatctggtttctcgaaaaccgcatgttgcttttccacacagccattatt |
200 |
Q |
| |
|
|||| ||||| || ||||||||||| |||||||||||| |||||||| |||||| | ||||| || ||||||| | || ||||| ||||| || |
|
|
| T |
149103 |
catttatcttagcttgaataaataatggcttgagatgcagcctcatcgaagcatctggcctttcgaatacaacatgttgatctttgacacaaccattgtt |
149004 |
T |
|
| Q |
201 |
catgacataatagcacagtggcttgtgagttgctatttcatcgtcgaaatcactttcctcttcattaatctctg |
274 |
Q |
| |
|
||| ||||||||||| | |||||| || | || ||||||||| ||||||||||| |||| |||| ||||| |
|
|
| T |
149003 |
cataacataatagcataatggcttatggatagccatttcatcggtaaaatcactttctacttcgttaacctctg |
148930 |
T |
|
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Target: scaffold0008 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 257
Target Start/End: Original strand, 126899 - 127104
Alignment:
| Q |
52 |
aagttgacggtggctccaccatccactagtactttatttacccctacgccattgatcttggcctgaataaataaaggcttgagatgcgatttcatcgaaa |
151 |
Q |
| |
|
|||||||| ||||| |||||||| || || || || |||||||||| ||||| || || || || ||||| || || |||||||| | ||||||| | |
|
|
| T |
126899 |
aagttgacagtggcgccaccatctaccagcaccttgtttacccctataccatttatttttgcttggataaacaatggtttgagatgaagtctcatcgaga |
126998 |
T |
|
| Q |
152 |
tatctggtttctcgaaaaccgcatgttgcttttccacacagccattattcatgacataatagcacagtggcttgtgagttgctatttcatcgtcgaaatc |
251 |
Q |
| |
|
|||||| | ||||| || || ||||| | ||| |||| ||||||||||| ||||||||||| | |||||| ||| | || |||||||| |||||| |
|
|
| T |
126999 |
cgtctggtctttcgaatacggcgtgttgatcttcaacaccaccattattcataacataatagcataatggcttatgaatcgccatttcatcagtgaaatc |
127098 |
T |
|
| Q |
252 |
actttc |
257 |
Q |
| |
|
|||||| |
|
|
| T |
127099 |
actttc |
127104 |
T |
|
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