View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9170_low_20 (Length: 262)

Name: NF9170_low_20
Description: NF9170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9170_low_20
NF9170_low_20
[»] chr6 (5 HSPs)
chr6 (18-246)||(13855527-13855755)
chr6 (126-246)||(13851773-13851893)
chr6 (73-127)||(33303630-33303684)
chr6 (77-126)||(13851711-13851760)
chr6 (95-127)||(9195788-9195820)
[»] chr1 (2 HSPs)
chr1 (73-126)||(34298407-34298460)
chr1 (78-126)||(10572624-10572672)
[»] chr8 (1 HSPs)
chr8 (126-182)||(34897122-34897178)
[»] chr7 (4 HSPs)
chr7 (124-175)||(38143258-38143309)
chr7 (89-127)||(927871-927909)
chr7 (78-126)||(27945017-27945065)
chr7 (83-127)||(30516391-30516435)
[»] chr5 (1 HSPs)
chr5 (77-126)||(22423847-22423896)
[»] chr4 (2 HSPs)
chr4 (89-126)||(43061708-43061745)
chr4 (78-126)||(22440635-22440683)
[»] chr3 (2 HSPs)
chr3 (73-126)||(12674536-12674589)
chr3 (91-127)||(35335590-35335626)
[»] scaffold0122 (1 HSPs)
scaffold0122 (78-118)||(8642-8682)
[»] chr2 (1 HSPs)
chr2 (91-127)||(37497109-37497145)


Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 13855527 - 13855755
Alignment:
Q  18 agttatcgaggataattttaagtatacctatgaagaacggatatagacacccgttaccaaacacgacatggaaactgacacatcgacactactaataatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13855527 agttatcgaggataattttaagtatacctatgaagaacggatatagacacccgttactaaacacgacatggaaactgacacatcgacactactaataatt 13855626  T
Q  118 tgagaaaatgtaattatatgtgtcgatgtccgacacacgtaacccgaggagtgttcgtacttcattgttacttaactataagctagatccaaaatttaga 217  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13855627 tgagaaaatgtaattatatgtgtcgatgtccgacacacctaacccgaggagtgttcgtacttcatagttacttaactataagctagatccaaaatttaga 13855726  T
Q  218 accaaaacagaaagttatgctattgatgt 246  Q
    |||||||||||||||||||| ||||||||    
T  13855727 accaaaacagaaagttatgccattgatgt 13855755  T

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Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 126 - 246
Target Start/End: Original strand, 13851773 - 13851893
Alignment:
Q  126 tgtaattatatgtgtcgatgtccgacacacgtaacccgaggagtgttcgtacttcattgttacttaactataagctagatccaaaatttagaaccaaaac 225  Q
    |||||||||||||||||||||| ||||| | ||||| ||||| |||   | |||||| |||||||||||||||||||||||||||||| |||||||||||    
T  13851773 tgtaattatatgtgtcgatgtctgacacgcctaacctgaggaatgtctatgcttcatagttacttaactataagctagatccaaaattaagaaccaaaac 13851872  T
Q  226 agaaagttatgctattgatgt 246  Q
    ||||||||||||  |||||||    
T  13851873 agaaagttatgcctttgatgt 13851893  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 127
Target Start/End: Original strand, 33303630 - 33303684
Alignment:
Q  73 accaaacacgacatggaaactgacacatcgacactactaataatttgagaaaatg 127  Q
    |||| |||||| | ||| |||||||||||||||||| ||||||||||| ||||||    
T  33303630 accagacacgatacggacactgacacatcgacactaataataatttgaaaaaatg 33303684  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 126
Target Start/End: Original strand, 13851711 - 13851760
Alignment:
Q  77 aacacgacatggaaactgacacatcgacactactaataatttgagaaaat 126  Q
    ||||||||| ||| |||||||| |||||||  ||||||||||||||||||    
T  13851711 aacacgacacggacactgacacgtcgacaccgctaataatttgagaaaat 13851760  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 9195820 - 9195788
Alignment:
Q  95 acacatcgacactactaataatttgagaaaatg 127  Q
    ||||||||||||| |||||||||||||||||||    
T  9195820 acacatcgacactcctaataatttgagaaaatg 9195788  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 34298407 - 34298460
Alignment:
Q  73 accaaacacgacatggaaactgacacatcgacactactaataatttgagaaaat 126  Q
    |||| |||||||| ||||||||||||| |||||| |||||||||||||||||||    
T  34298407 accagacacgacacggaaactgacacaccgacaccactaataatttgagaaaat 34298460  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 10572672 - 10572624
Alignment:
Q  78 acacgacatggaaactgacacatcgacactactaataatttgagaaaat 126  Q
    |||||||||| | ||||||||  |||||| |||||||||||||||||||    
T  10572672 acacgacatgaacactgacacgccgacaccactaataatttgagaaaat 10572624  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 182
Target Start/End: Original strand, 34897122 - 34897178
Alignment:
Q  126 tgtaattatatgtgtcgatgtccgacacacgtaacccgaggagtgttcgtacttcat 182  Q
    |||||||||||||||||||||| |||||| ||||  |||||||||| ||| ||||||    
T  34897122 tgtaattatatgtgtcgatgtcggacacatgtaattcgaggagtgtccgtgcttcat 34897178  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 38143258 - 38143309
Alignment:
Q  124 aatgtaattatatgtgtcgatgtccgacacacgtaacccgaggagtgttcgt 175  Q
    ||||||||||||||||| | |||| ||||||| ||| |||||||||||||||    
T  38143258 aatgtaattatatgtgttggtgtcagacacacctaatccgaggagtgttcgt 38143309  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 127
Target Start/End: Complemental strand, 927909 - 927871
Alignment:
Q  89 aaactgacacatcgacactactaataatttgagaaaatg 127  Q
    |||||||||| ||||||||| ||||||||||||||||||    
T  927909 aaactgacacgtcgacactaataataatttgagaaaatg 927871  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 27945017 - 27945065
Alignment:
Q  78 acacgacatggaaactgacacatcgacactactaataatttgagaaaat 126  Q
    |||||||| ||| ||||||||  |||||| |||||||||||||||||||    
T  27945017 acacgacacggacactgacacgccgacaccactaataatttgagaaaat 27945065  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 127
Target Start/End: Complemental strand, 30516435 - 30516391
Alignment:
Q  83 acatggaaactgacacatcgacactactaataatttgagaaaatg 127  Q
    ||||||| |||||||| |||||||||  |||||||||||||||||    
T  30516435 acatggacactgacacgtcgacactaacaataatttgagaaaatg 30516391  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 126
Target Start/End: Complemental strand, 22423896 - 22423847
Alignment:
Q  77 aacacgacatggaaactgacacatcgacactactaataatttgagaaaat 126  Q
    ||||||||| ||| ||||||||   |||||||||||||||||||||||||    
T  22423896 aacacgacacggatactgacaccctgacactactaataatttgagaaaat 22423847  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 43061745 - 43061708
Alignment:
Q  89 aaactgacacatcgacactactaataatttgagaaaat 126  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  43061745 aaactgaaacatcgacactagtaataatttgagaaaat 43061708  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 22440683 - 22440635
Alignment:
Q  78 acacgacatggaaactgacacatcgacactactaataatttgagaaaat 126  Q
    |||||||||||| ||||| ||||||||||   |||||||||||||||||    
T  22440683 acacgacatggacactgatacatcgacaccgttaataatttgagaaaat 22440635  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 12674589 - 12674536
Alignment:
Q  73 accaaacacgacatggaaactgacacatcgacactactaataatttgagaaaat 126  Q
    |||| |||||||| ||| | ||||||| ||||||| ||||||||||||||||||    
T  12674589 accagacacgacacggacattgacacaccgacactgctaataatttgagaaaat 12674536  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 35335590 - 35335626
Alignment:
Q  91 actgacacatcgacactactaataatttgagaaaatg 127  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  35335590 actgacacatagacactagtaataatttgagaaaatg 35335626  T

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Target: scaffold0122 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 8642 - 8682
Alignment:
Q  78 acacgacatggaaactgacacatcgacactactaataattt 118  Q
    |||||||||||| |||||||| |||||||| ||||||||||    
T  8642 acacgacatggacactgacacgtcgacacttctaataattt 8682  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 37497109 - 37497145
Alignment:
Q  91 actgacacatcgacactactaataatttgagaaaatg 127  Q
    |||||||||||||||||  ||||||||||||||||||    
T  37497109 actgacacatcgacactgataataatttgagaaaatg 37497145  T

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