View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9170_low_3 (Length: 617)

Name: NF9170_low_3
Description: NF9170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9170_low_3
NF9170_low_3
[»] chr7 (4 HSPs)
chr7 (133-600)||(4561247-4561725)
chr7 (17-103)||(4561762-4561848)
chr7 (549-592)||(1101273-1101316)
chr7 (16-84)||(1101734-1101801)
[»] chr2 (4 HSPs)
chr2 (133-600)||(14953395-14953873)
chr2 (17-103)||(14953277-14953363)
chr2 (16-83)||(40833270-40833336)
chr2 (16-89)||(14002214-14002287)
[»] chr8 (2 HSPs)
chr8 (133-600)||(5370525-5371003)
chr8 (17-103)||(5370406-5370492)
[»] chr3 (2 HSPs)
chr3 (16-87)||(46697191-46697262)
chr3 (238-275)||(46697010-46697047)
[»] chr6 (1 HSPs)
chr6 (16-81)||(23885849-23885914)
[»] chr4 (1 HSPs)
chr4 (16-84)||(56398469-56398536)
[»] chr1 (1 HSPs)
chr1 (16-89)||(6284577-6284650)
[»] chr5 (1 HSPs)
chr5 (24-56)||(37606037-37606069)


Alignment Details
Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 133 - 600
Target Start/End: Complemental strand, 4561725 - 4561247
Alignment:
Q  133 cttacgtgacattctctcaccacctcccggcacccactgtctctctcaccgccgtctctctacaaccaccgccgtctaagctctcacctacaactgcttt 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  4561725 cttacgtgacattctctcaccacctcccggcacccactgtctctctcaccgctgtctctctacaaccaccgccgtctaagctctcacctaccactgcttt 4561626  T
Q  233 ctcattcttctccgatcagcttagatctgaccaccaccaacaagtttgtccttctttccgcttctgcaaacgacctgcaactctcagattccgatcacca 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||     
T  4561625 ctcattcttctccgatcagcttagatctgaccaccaccaacaagtttgtccttctttccacttctgcaaacgacctgcaactctcagattcagatcaccg 4561526  T
Q  333 actgacaaacaccggaacattttctgctttcctcttcagatccgatcaattcaaatatgtctccacctcctacaaatccaaccacttctactgtcaccac 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4561525 actgacaaacaccggaacattttctgctttcctcttcagatccgatcaattcaaatatgtctccacctcctacaaatccaaccacttctgctgtcaccac 4561426  T
Q  433 caaagtcaaaggacgagagagaaaga-----------agagggaaacggacatggagtgagaaagaaaagggaaaatgacaaaatttccacttcattttc 521  Q
    ||||||||||||||||||||||||||           |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  4561425 caaagtcaaaggacgagagagaaagaagagtgagagaagagggaaacggacatggagtgagaaaggaaagggaaaatgacaaaattgccacttcattttc 4561326  T
Q  522 tgttgaaaacccaattttgtccttatgctttaattagaattacgaaattgccattgctgtcgtatttgtgtatggattt 600  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4561325 tgttgaaaacccaattttgtccttatactttaattagaattacgaaattgccactgctgtcgtatttgtgtatggattt 4561247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 4561848 - 4561762
Alignment:
Q  17 acatcaaaatacaaacacaaatatgacaccaaacactgttcaccgtatatttatacggtatttatacatcagtgttccttcttcttc 103  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4561848 acatcaaaatacaaacacaaatttgacaccaaacactgttcaccgtatatttatacggtatttatacatcagtgttccttcttcttc 4561762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 549 - 592
Target Start/End: Complemental strand, 1101316 - 1101273
Alignment:
Q  549 ctttaattagaattacgaaattgccattgctgtcgtatttgtgt 592  Q
    ||||||| | |||||| |||||||||||||||||||||||||||    
T  1101316 ctttaatgataattacaaaattgccattgctgtcgtatttgtgt 1101273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 1101801 - 1101734
Alignment:
Q  16 gacatcaaaatacaaacacaaatatgacaccaaacactgttcaccgtatatttatacggtatttataca 84  Q
    |||| ||||||||||||||||||  |||| || |||||||||| |||||| |||||| |||||| ||||    
T  1101801 gacaccaaaatacaaacacaaattagacatcatacactgttcatcgtata-ttatacagtatttgtaca 1101734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 133 - 600
Target Start/End: Original strand, 14953395 - 14953873
Alignment:
Q  133 cttacgtgacattctctcaccacctcccggcacccactgtctctctcaccgccgtctctctacaaccaccgccgtctaagctctcacctacaactgcttt 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  14953395 cttacgtgacattctctcaccacctcccggcacccactgtctctctcaccgctgtctctctacaaccaccgccgtctaagctctcacctaccactgcttt 14953494  T
Q  233 ctcattcttctccgatcagcttagatctgaccaccaccaacaagtttgtccttctttccgcttctgcaaacgacctgcaactctcagattccgatcacca 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  14953495 ctcattcttctccgatcagcttagatctgaccaccaccaacaagtttgtccttctttccgcttctgcaaacgacctgcaactctcagattccgatcactg 14953594  T
Q  333 actgacaaacaccggaacattttctgctttcctcttcagatccgatcaattcaaatatgtctccacctcctacaaatccaaccacttctactgtcaccac 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14953595 actgacaaacaccggaacattttctgctttcctcttcagatccgatcaattcaaatatgtctccacctcctacaaatccaaccacttctgctgtcaccac 14953694  T
Q  433 caaagtcaaaggacgagagagaa-----------agaagagggaaacggacatggagtgagaaagaaaagggaaaatgacaaaatttccacttcattttc 521  Q
    |||||||||||||||||||||||           |||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||| |||||    
T  14953695 caaagtcaaaggacgagagagaaagaagagtgagagaagagggaaacggacatgaagtgagaaaggaaagggaaaatgacaaaattgccacttcgttttc 14953794  T
Q  522 tgttgaaaacccaattttgtccttatgctttaattagaattacgaaattgccattgctgtcgtatttgtgtatggattt 600  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14953795 tgttgaaaacccaattttgtccttatactttaattagaattacgaaattgccactgctgtcgtatttgtgtatggattt 14953873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 14953277 - 14953363
Alignment:
Q  17 acatcaaaatacaaacacaaatatgacaccaaacactgttcaccgtatatttatacggtatttatacatcagtgttccttcttcttc 103  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14953277 acatcaaaatacaaacacaaatttgacaccaaacactgttcaccgtatatttatacggtatttatacatcagtgttccttcttcttc 14953363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 40833336 - 40833270
Alignment:
Q  16 gacatcaaaatacaaacacaaatatgacaccaaacactgttcaccgtatatttatacggtatttatac 83  Q
    ||||||||| |||||| |||||| |||||||||| | |||| ||||||| ||||||||||||||||||    
T  40833336 gacatcaaattacaaa-acaaatttgacaccaaatattgttgaccgtatgtttatacggtatttatac 40833270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 14002287 - 14002214
Alignment:
Q  16 gacatcaaaatacaaacacaaatatgacaccaaacactgttcaccgtatatttatacggtatttatacatcagt 89  Q
    |||||||||||||||| ||||||  |||| ||||||  |||| |  ||||||||||||||||| ||||| ||||    
T  14002287 gacatcaaaatacaaatacaaattagacatcaaacaaagttcgcaatatatttatacggtattgatacaccagt 14002214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 133 - 600
Target Start/End: Original strand, 5370525 - 5371003
Alignment:
Q  133 cttacgtgacattctctcaccacctcccggcacccactgtctctctcaccgccgtctctctacaaccaccgccgtctaagctctcacctacaactgcttt 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  5370525 cttacgtgacattctctcaccacctcccggcacccactgtctctctcaccgctgtctctctacaaccaccgccgtctaagctctcacctaccactgcttt 5370624  T
Q  233 ctcattcttctccgatcagcttagatctgaccaccaccaacaagtttgtccttctttccgcttctgcaaacgacctgcaactctcagattccgatcacca 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||      
T  5370625 ctcattcttctccgatcagcttagatctgaccaccaccaacaagtttgtccttctttcctcttctgcaaacgacctgcaactctcagattctgatcactg 5370724  T
Q  333 actgacaaacaccggaacattttctgctttcctcttcagatccgatcaattcaaatatgtctccacctcctacaaatccaaccacttctactgtcaccac 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5370725 actgacaaacaccggaacattttctgctttcctcttcagatccgatcaattcaaatatgtctccacctcctacaaatccaaccacttctgctgtcaccac 5370824  T
Q  433 caaagtcaaaggacgagagagaa-----------agaagagggaaacggacatggagtgagaaagaaaagggaaaatgacaaaatttccacttcattttc 521  Q
    |||||||||||||||||||||||           ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||    
T  5370825 caaagtcaaaggacgagagagaaagaagagtgagagaagagggaaacggacatggagtgagaaaggaaagggaaaatgacaaaattgccacttctttttc 5370924  T
Q  522 tgttgaaaacccaattttgtccttatgctttaattagaattacgaaattgccattgctgtcgtatttgtgtatggattt 600  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5370925 tgttgaaaacccaattttgtccttatactttaattagaattacgaaattgccactgctgtcgtatttgtgtatggattt 5371003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 5370406 - 5370492
Alignment:
Q  17 acatcaaaatacaaacacaaatatgacaccaaacactgttcaccgtatatttatacggtatttatacatcagtgttccttcttcttc 103  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5370406 acatcaaaatacaaacacaaatttgacaccaaacactgttcaccgtatatttatacggtatttatatatcagtgttccttcttcttc 5370492  T

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Target: chr3 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 46697262 - 46697191
Alignment:
Q  16 gacatcaaaatacaaacacaaatatgacaccaaacactgttcaccgtatatttatacggtatttatacatca 87  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  46697262 gacatcaaaatacaaacacaaatttgacaccaaacactgttcaccgtatatttatacggtatttatacatca 46697191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 238 - 275
Target Start/End: Complemental strand, 46697047 - 46697010
Alignment:
Q  238 tcttctccgatcagcttagatctgaccaccaccaacaa 275  Q
    |||||||||||||||| |||||||||||||||||||||    
T  46697047 tcttctccgatcagctcagatctgaccaccaccaacaa 46697010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 23885849 - 23885914
Alignment:
Q  16 gacatcaaaatacaaacacaaatatgacaccaaacactgttcaccgtatatttatacggtatttat 81  Q
    |||||||||||||||||||||||  |||| ||||||||||| || |||||||||||| ||||||||    
T  23885849 gacatcaaaatacaaacacaaattagacatcaaacactgtttacagtatatttatacagtatttat 23885914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 56398536 - 56398469
Alignment:
Q  16 gacatcaaaatacaaacacaaatatgacaccaaacactgttcaccgtatatttatacggtatttataca 84  Q
    |||||||||||||||||||||||  |||| ||||||||||||| |||||| |||||| |||||| ||||    
T  56398536 gacatcaaaatacaaacacaaattagacatcaaacactgttcatcgtata-ttatacagtatttgtaca 56398469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 6284577 - 6284650
Alignment:
Q  16 gacatcaaaatacaaacacaaatatgacaccaaacactgttcaccgtatatttatacggtatttatacatcagt 89  Q
    |||||||||||||||||||||||  |||| |||||| | ||||  |||| ||||||||||||| ||| ||||||    
T  6284577 gacatcaaaatacaaacacaaattagacatcaaacattattcatagtatctttatacggtattcatatatcagt 6284650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 37606069 - 37606037
Alignment:
Q  24 aatacaaacacaaatatgacaccaaacactgtt 56  Q
    |||||||||||||||||||||||| ||||||||    
T  37606069 aatacaaacacaaatatgacaccatacactgtt 37606037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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