View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9170_low_32 (Length: 228)
Name: NF9170_low_32
Description: NF9170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9170_low_32 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 34099537 - 34099435
Alignment:
| Q |
1 |
caaataaatttctaagcacacagtgagtcataaatccttccaaactaaacaaagatttgaagtacaaagaaaggcataccgaaggagcaaaatcaaaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34099537 |
caaataaatttctaagcacacagtgagtcataaatccttccaaactaaacaaagatttgaagtacaaagaaaggcataccgaaggagcaaaatcaaaatt |
34099438 |
T |
|
| Q |
101 |
tgc |
103 |
Q |
| |
|
||| |
|
|
| T |
34099437 |
tgc |
34099435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 147 - 226
Target Start/End: Complemental strand, 34099391 - 34099312
Alignment:
| Q |
147 |
gtaagcaagcaacatatccggcatcttctccatcaacctagcagtgtttgccctcttctccgcagctatcctatcaacct |
226 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34099391 |
gtaagcaagcagcatatccggcatcttctccatcaacctagcagtgtttgccctcttctccgcagctatcctatcaacct |
34099312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University