View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9170_low_37 (Length: 214)
Name: NF9170_low_37
Description: NF9170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9170_low_37 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 13346803 - 13346971
Alignment:
| Q |
1 |
tcggtatatagagaattaggatcaaggagagatttacctctctgagtcggttgactttcactcggtttagatttttgactgagctgaggaatatggtctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||| |
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| T |
13346803 |
tcggtatatagagaattaggatcaaggagagatttacctgtctgagtcggttgactttcactcggttcagattcttggctgagctgaggaatatggtctt |
13346902 |
T |
|
| Q |
101 |
ctactacttgatcattgtttcttctcgcctaaattttgcctttccaaattggatttccttcctcaaatc |
169 |
Q |
| |
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||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13346903 |
ctactacttgatcattgtttcttctggcataaattttgcctttccaaattggatttccttcctcaaatc |
13346971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 13347986 - 13348153
Alignment:
| Q |
1 |
tcggtatatagagaattaggatcaaggagagatttacctctctgagtcggttgactttcactcggtttagatttttgactgagctgaggaatatggtctt |
100 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
13347986 |
tcggtatatagagaattagga-caaggagagatttacctctctgagtcggttgactttcactcggtttagattcttgactgagctgaggaatatggtctt |
13348084 |
T |
|
| Q |
101 |
ctactacttgatcattgtttcttctcgcctaaattttgcctttccaaattggatttccttcctcaaatc |
169 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
13348085 |
ctactacttgatcattgtttcttctcgtgtaaattttgcttttccaaattggatttccttcctcaaatc |
13348153 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 4 - 198
Target Start/End: Original strand, 13349162 - 13349357
Alignment:
| Q |
4 |
gtatatagagaattaggatcaaggagagatttacctctctgagtcggttgactttcactcggtttagatttttgactgagctgaggaatatggtcttcta |
103 |
Q |
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|
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||| |
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| T |
13349162 |
gtatatagataattaggatcaaggagagatttacctgtctgagtcggttgactttcactcggtttagattcttggctgagctgaggaatatggtattcta |
13349261 |
T |
|
| Q |
104 |
ctacttgatcattgtttcttctcgcctaaattttgcctttccaaattggatttccttcctcaaatc-nnnnnnngtttcattactgggttctttat |
198 |
Q |
| |
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|||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
13349262 |
ctacttgatcattgtttcttctggcataaattttggctttccaaattggatttccttcctcaaatcttttttctgtttcattactgggttctttat |
13349357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 13346391 - 13346223
Alignment:
| Q |
1 |
tcggtatatagagaattaggatcaaggagagatttacctctctgagtcggttgactttcactcggtttagatttttgactgagctgaggaatatggtctt |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| || | ||||||||||||||||||||||||||||||| ||| |||| ||||||||||| ||||| |
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| T |
13346391 |
tcggtatatagagaattaggatcaaagagagatttagctgtttgagtcggttgactttcactcggtttagattcttggctgatctgaggaatattgtctt |
13346292 |
T |
|
| Q |
101 |
ctactacttgatcattgtttcttctcgcctaaattttgcctttccaaattggatttccttcctcaaatc |
169 |
Q |
| |
|
||||||||| ||||||||||||||| || |||||||| |||||||||||| ||||||||||| |||||| |
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|
| T |
13346291 |
ctactacttcatcattgtttcttctggcataaatttttcctttccaaatttgatttccttccacaaatc |
13346223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 13348749 - 13348581
Alignment:
| Q |
1 |
tcggtatatagagaattaggatcaaggagagatttacctctctgagtcggttgactttcactcggtttagatttttgactgagctgaggaatatggtctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| | |||||| | ||||||||||||||| ||||| ||| ||||||||||||||| |||||| |
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| T |
13348749 |
tcggtatatagagaattaggatcaaggagaaatttacctatttgagtcattagactttcactcggttcagattcttggctgagctgaggaatagggtctt |
13348650 |
T |
|
| Q |
101 |
ctactacttgatcattgtttcttctcgcctaaattttgcctttccaaattggatttccttcctcaaatc |
169 |
Q |
| |
|
|| |||||||||||||||||||||| || ||||||||| ||||||||||| ||||| ||| |||||||| |
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|
| T |
13348649 |
cttctacttgatcattgtttcttctggcataaattttggctttccaaatttgattttcttgctcaaatc |
13348581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 13347574 - 13347404
Alignment:
| Q |
1 |
tcggtatatagagaattaggatcaaggagagatttacctctctgagtcggttgactttcactcggtttagatttttgactgagctgaggaatatggtctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||| | ||||||||| ||||||||||||||| ||||| ||| || ||||||||||| |||||| |
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| T |
13347574 |
tcggtatatagagaattaggatcaaggaaatatttaccggtttgagtcggtagactttcactcggttcagattcttggttgtgctgaggaatagggtctt |
13347475 |
T |
|
| Q |
101 |
ctactacttgatcattgtttct--tctcgcctaaattttgcctttccaaattggatttccttcctcaaatc |
169 |
Q |
| |
|
|||||||||||||||| ||||| |||||| |||||||||| ||| |||||| ||||| ||| |||||||| |
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|
| T |
13347474 |
ctactacttgatcattatttcttctctcgcataaattttgcgttttcaaatttgattttcttgctcaaatc |
13347404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 125; Significance: 1e-64; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 14487 - 14319
Alignment:
| Q |
1 |
tcggtatatagagaattaggatcaaggagagatttacctctctgagtcggttgactttcactcggtttagatttttgactgagctgaggaatatggtctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||| ||||| ||| ||||||||||||||| |||||| |
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| T |
14487 |
tcggtatatagagaattaggatcaaggagaaatttacctgtctgagttggttgactttcactcggttcagattcttggctgagctgaggaatagggtctt |
14388 |
T |
|
| Q |
101 |
ctactacttgatcattgtttcttctcgcctaaattttgcctttccaaattggatttccttcctcaaatc |
169 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||| |||| |
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| T |
14387 |
ctactacttgatcattgtttcttctagcataaattttgtctttccaaattggatttccttcctccaatc |
14319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 125; Significance: 1e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 2702694 - 2702862
Alignment:
| Q |
1 |
tcggtatatagagaattaggatcaaggagagatttacctctctgagtcggttgactttcactcggtttagatttttgactgagctgaggaatatggtctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||| ||| ||||||||||||||| |||||| |
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|
| T |
2702694 |
tcggtatatagagaattaggatcaaggagagatttacctgtctgagttggttgactttcactcggttcagattcttggctgagctgaggaatagggtctt |
2702793 |
T |
|
| Q |
101 |
ctactacttgatcattgtttcttctcgcctaaattttgcctttccaaattggatttccttcctcaaatc |
169 |
Q |
| |
|
||||||||||||||||| ||||||| || |||||||| || |||||||||||||||||||||||||||| |
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|
| T |
2702794 |
ctactacttgatcattgcttcttctggcataaatttttcccttccaaattggatttccttcctcaaatc |
2702862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 3 - 169
Target Start/End: Original strand, 22812447 - 22812613
Alignment:
| Q |
3 |
ggtatatagagaattaggatcaaggagagatttacctctctgagtcggttgactttcactcggtttagatttttgactgagctgaggaatatggtcttct |
102 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| ||| |||||||||||||| |||||||| |
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| T |
22812447 |
ggtatatagagaattaggatcaaagagagatttacctatctgagtcggttgactttcactcggttcagattcttggctgagctgaggaattgggtcttct |
22812546 |
T |
|
| Q |
103 |
actacttgatcattgtttcttctcgcctaaattttgcctttccaaattggatttccttcctcaaatc |
169 |
Q |
| |
|
||||||| || |||||||||||| || |||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
22812547 |
actactttattattgtttcttctggcataaattttgcctttccaaattggacttccttcctcaaatc |
22812613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 5 - 169
Target Start/End: Original strand, 24761419 - 24761583
Alignment:
| Q |
5 |
tatatagagaattaggatcaaggagagatttacctctctgagtcggttgactttcactcggtttagatttttgactgagctgaggaatatggtcttctac |
104 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||| | |||| | | |||||||||||||||| ||||| ||| |||||||||||||| |||||||||| |
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| T |
24761419 |
tatatagaaaattaggatcaaagagagatttacctgtttgagccaggtgactttcactcggttcagattcttggctgagctgaggaatgaggtcttctac |
24761518 |
T |
|
| Q |
105 |
tacttgatcattgtttcttctcgcctaaattttgcctttccaaattggatttccttcctcaaatc |
169 |
Q |
| |
|
||||| |||||| |||| | || ||||||| | ||| ||| ||| ||||||||||||||||| |
|
|
| T |
24761519 |
tactttatcattatttcgttaagcataaatttctctttttcaatttgaatttccttcctcaaatc |
24761583 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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