View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9170_low_8 (Length: 484)
Name: NF9170_low_8
Description: NF9170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9170_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 452; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 18 - 473
Target Start/End: Complemental strand, 47253326 - 47252871
Alignment:
| Q |
18 |
aatctattgcagacctcatctttgagtgaatgcttgttttacaaatctgctgagttggaggaatgtgttctgattttgcatgatttgtatttggtaagaa |
117 |
Q |
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| T |
47253326 |
aatctattgcagacctcatctttgagtgaatgcttgttttacaaatctgctgagttggaggaatgtgttctgattttgcatgatttgtatttggtaagaa |
47253227 |
T |
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| Q |
118 |
gggctgcatcattgaaagctgttagggagaaatacaagcaacacaaggtgattgttttagcctttctttgttatagttaatatatagctggttcttatta |
217 |
Q |
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| T |
47253226 |
gggctgcatcattgaaagctgttagggagaaatacaagcaacacaaggtgattgttttagcctttctttgttatagttaatatatagctggttcttatta |
47253127 |
T |
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| Q |
218 |
ttgcaagttgattgacttgaagtgtttgtttgaaacagttcaagaatgtggcaaaccttccttcatctccagaaataccaaatcattactttgtagaaga |
317 |
Q |
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| T |
47253126 |
ttgcaagttgattgacttgaagtgtttgtttgaaacagttcaagaatgtggcaaaccttccttcatctccagaaataccaaatcattactttgtagaaga |
47253027 |
T |
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| Q |
318 |
gtgacaatctaaatcagaaatactgtcttaggggttaagtggtgtttggcaatcaacttagttagccttaggcaaaatatgtttggtggcttagatactt |
417 |
Q |
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| T |
47253026 |
gtgacaatctgaatcagaaatactgtcttaggggttaagtggtgtttggcaatcaacttagttagccttaggcaaaatatgtttggtggcttagatactt |
47252927 |
T |
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| Q |
418 |
gaacctggatctctgtgcatatggttacttaattactcattttgtttggctatctc |
473 |
Q |
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| T |
47252926 |
gaacctggatctctgtgcatatggttacttaattactcattttgtttggctatctc |
47252871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 56 - 317
Target Start/End: Complemental strand, 47242038 - 47241780
Alignment:
| Q |
56 |
ttacaaatctgctgagttggaggaatgtgttctgattttgcatgatttgtatttggtaagaagggctgcatcattgaaagctgttagggagaaatacaag |
155 |
Q |
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| T |
47242038 |
ttacaagtcggctgaattggaagaatgtgttatgattttacatgacttgtatttgtcaagaagggcagcatccttcaaagctgttagggagaaatacaag |
47241939 |
T |
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| Q |
156 |
caacacaaggtgattgttttagccttt--------ctttgttatagttaatatatagctggttcttattattgcaagttgattgacttgaagtgtttgtt |
247 |
Q |
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| T |
47241938 |
caacaaaaggtgattgttttaacttttaacatttcatttgttatagttaa-----------ttcttattaatgcaagttggttgacttgaactcattgtc |
47241850 |
T |
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| Q |
248 |
tgaaacagttcaagaatgtggcaaaccttccttcatctccagaaataccaaatcattactttgtagaaga |
317 |
Q |
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| T |
47241849 |
tggaacagttcaaatatgtggcaaacctccctagctcgccagagataccaaattattactttgaagaaga |
47241780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 209 - 319
Target Start/End: Complemental strand, 47248337 - 47248227
Alignment:
| Q |
209 |
ttcttattattgcaagttgattgacttgaagtgtttgtttgaaacagttcaagaatgtggcaaaccttccttcatctccagaaataccaaatcattactt |
308 |
Q |
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| T |
47248337 |
ttcttattattgcaagttcattgacttgaaatcgttttctggaacagttaaaatgtgtggcaaacctgccttcatcgccagagataccaaatcattactt |
47248238 |
T |
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| Q |
309 |
tgtagaagagt |
319 |
Q |
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|| | |||||| |
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| T |
47248237 |
tgaaaaagagt |
47248227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 47248525 - 47248367
Alignment:
| Q |
18 |
aatctattgcagacctcatctttgagtgaatgcttgttttacaaatctgctgagttggaggaatgtgttctgattttgcatgatttgtatttggtaagaa |
117 |
Q |
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|||||||||||||| | || || ||||||||||| ||||| ||| ||| | || || || |||||| | ||||| |||||||||||| || ||||| |
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| T |
47248525 |
aatctattgcagactccttccctgtgtgaatgcttgggttacacatcggctaatttagaagattgtgttatcattttacatgatttgtatatgtcaagaa |
47248426 |
T |
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| Q |
118 |
gggctgcatcattgaaagctgttagggagaaatacaagcaacacaaggtgattgtttta |
176 |
Q |
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||| | ||| || ||||||||| | || ||||||||||| ||||||||||||||||| |
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| T |
47248425 |
aggcaggatccttcaaagctgttcgtgacaaatacaagcagaacaaggtgattgtttta |
47248367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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