View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9170_low_9 (Length: 484)
Name: NF9170_low_9
Description: NF9170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9170_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 250 - 468
Target Start/End: Original strand, 6610680 - 6610895
Alignment:
| Q |
250 |
taaataaatgactagcgctgaaccaacccactggagaagccactagaaagcccataaattgtccacttaatgctgctggtatcataagatatattgctat |
349 |
Q |
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| T |
6610680 |
taaataaatgactagcgctgaaccaacccactggagaagccactagaaagcccataaattgtccacttaatgttg---gtatcataagatatattgctat |
6610776 |
T |
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| Q |
350 |
aattgatacagtaaagggatacaagtttacaattaaaaacaaaaggaattcatatcctgacaagaccgatttcccagcatttcctggagcagaaatagta |
449 |
Q |
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| T |
6610777 |
aattgatacagtaaagggatacaagtttacaattaaaaacaaaaagaattcatatccaggcatgaccgatttcccagcattttctggagtagaaatagta |
6610876 |
T |
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| Q |
450 |
gaatttgaggaagtgatgt |
468 |
Q |
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||||||||||||||||||| |
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| T |
6610877 |
gaatttgaggaagtgatgt |
6610895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 6626946 - 6626717
Alignment:
| Q |
18 |
agatctcagtagtcatagttctcgtaccaataacctttattgatatttctcctactgcaccaatgcatgctttaacaatcatctattaaatttaacttag |
117 |
Q |
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| T |
6626946 |
agatctcagtagtcatagttcacgtaccaataacctttattgatatttctcctactgcaccaatgc----tttaacaatcatctattaaatttaacttag |
6626851 |
T |
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| Q |
118 |
ccattctgcgtttagccgttgagaataagactccattacaaatgacgtgaaacaacacactaaataaaaatgaagcaaaaactatgaataaaatcaggga |
217 |
Q |
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| T |
6626850 |
caattctgcgttcagcccttgagtataagactccattaaaaatgacgtgaaacaccacggtaaataaaaatgaaacaaaaactatgaataaaatcaagga |
6626751 |
T |
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| Q |
218 |
attgacatgtgtaggggatatcctccacatattaaataaa |
257 |
Q |
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| T |
6626750 |
attgac------aggggatatcctccacatattaaataaa |
6626717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 3e-46; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 203 - 468
Target Start/End: Complemental strand, 30649210 - 30648957
Alignment:
| Q |
203 |
gaataaaatcagggaattgacatgtgtaggggatatcctccacatattaaataaatgactagcgctgaaccaacccactggagaagccactagaaagccc |
302 |
Q |
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| T |
30649210 |
gaataaaatcacggaattgacatgtgtaggggatatcctccacatagaaaataaataactagcggtaaaccaacccattggagaacccactagaaagcat |
30649111 |
T |
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| Q |
303 |
ataaattgtccacttaatgctgctggtatcataagatatattgctataattgatacagtaaagggatacaagtttacaattaaaaacaaaaggaattcat |
402 |
Q |
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|| || |||| || ||||| ||||| | |||| |||| ||||||||||| ||||| ||||| || | || ||||||||||| |||||||| |
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| T |
30649110 |
at---ttttcca--ta-------tggtaacataataaatatcgctaaaattgatacagaaaaggaatacatattaataaataaaaacaaaaagaattcat |
30649023 |
T |
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| Q |
403 |
atcctgacaagaccgatttcccagcatttcctggagcagaaatagtagaatttgaggaagtgatgt |
468 |
Q |
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| T |
30649022 |
aacctgacaagactgatttcccagcatttcctggggcagaaatggtaaaattggaggaagtgatgt |
30648957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 201 - 468
Target Start/End: Complemental strand, 26089557 - 26089302
Alignment:
| Q |
201 |
atgaataaaatcagggaattgacatgtgtaggggatatcctccacatattaaataaatgactagcgctgaaccaacccactggagaagccactagaaagc |
300 |
Q |
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||||||||||| | |||||||||||||||||||||||||||||||||| |||||||| ||| || | | ||| | || |||||| || |||||||| | |
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| T |
26089557 |
atgaataaaataatggaattgacatgtgtaggggatatcctccacatagaaaataaatagctaacggtaagccatctcattggagaggctactagaaacc |
26089458 |
T |
|
| Q |
301 |
ccataaattgtccacttaatgctgctggtatcataagatatattgctataattgatacagtaaagggatacaagtttacaattaaaaacaaaaggaattc |
400 |
Q |
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| || || |||| || ||||||||||| | |||| |||| ||||||||||| ||||| ||||| ||||| || ||||||||||| |||||| |
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| T |
26089457 |
ctat---ttttcca--ta-------tggtatcataaaaaatatcgctaaaattgatacagaaaaggaatacatgtttataaataaaaacaaaaagaattc |
26089370 |
T |
|
| Q |
401 |
atatcctgacaagaccgatttcccagcatttcctggagcagaaatagtagaatttgaggaagtgatgt |
468 |
Q |
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|||||||||||| || |||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
26089369 |
atatcctgacaaaacagatttcccagcatttcctggagtagaaatagtagaattggaggaagtgatgt |
26089302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 406 - 468
Target Start/End: Complemental strand, 29552922 - 29552860
Alignment:
| Q |
406 |
ctgacaagaccgatttcccagcatttcctggagcagaaatagtagaatttgaggaagtgatgt |
468 |
Q |
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| T |
29552922 |
ctgacatgaccgattttccagcatttcctagggtagaaatagtagaattggaggaagtgatgt |
29552860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 407 - 464
Target Start/End: Complemental strand, 24509460 - 24509400
Alignment:
| Q |
407 |
tgacaagaccgatttcccagcatttcctgg---agcagaaatagtagaatttgaggaagtg |
464 |
Q |
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|||||||||||||||||||||||||||| | || |||||||||||||| ||||||||| |
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| T |
24509460 |
tgacaagaccgatttcccagcatttccttggtcagaagaaatagtagaatcggaggaagtg |
24509400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 468
Target Start/End: Original strand, 28693130 - 28693178
Alignment:
| Q |
420 |
ttcccagcatttcctggagcagaaatagtagaatttgaggaagtgatgt |
468 |
Q |
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|||||| ||||| |||| | |||||||||||| |||||||||||||||| |
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| T |
28693130 |
ttcccaacatttgctggggtagaaatagtagagtttgaggaagtgatgt |
28693178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 468
Target Start/End: Complemental strand, 28866078 - 28866018
Alignment:
| Q |
408 |
gacaagaccgatttcccagcatttcctggagcagaaatagtagaatttgaggaagtgatgt |
468 |
Q |
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|||||||| ||||||||| ||||| | | | ||||||||||||||| ||||||||||||| |
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| T |
28866078 |
gacaagacagatttcccaacattttttagggtagaaatagtagaattggaggaagtgatgt |
28866018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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