View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9171_high_6 (Length: 238)
Name: NF9171_high_6
Description: NF9171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9171_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 10 - 221
Target Start/End: Original strand, 5827118 - 5827329
Alignment:
| Q |
10 |
catcaccaacaaaaatagacgtttcatcaaaatctaatatgccccatgttgttccacaaaatcgtttccttctcattttcaaatttagtttgagagaaaa |
109 |
Q |
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| T |
5827118 |
catcaccaacaaaaatagacgtttcatcaaaatctaatatgccccatgttgttccacaaaatcgtttccttctcattttcaaatttagtttgagagaaaa |
5827217 |
T |
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| Q |
110 |
taagttgtttacttcttgatccaatgcggctgtagtctcctagtcctgagacttgtcaatgagctctaattagtgattcctcaggagccttagttcattg |
209 |
Q |
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||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5827218 |
taagttgtttacttcttgatccaatgctgttgtagtctcctagtcctgagacttgtcaatgagctctaattagtgattcctcaggagccttagttcattg |
5827317 |
T |
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| Q |
210 |
ggcctctcaccg |
221 |
Q |
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|||||||||||| |
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| T |
5827318 |
ggcctctcaccg |
5827329 |
T |
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