View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9171_high_7 (Length: 229)
Name: NF9171_high_7
Description: NF9171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9171_high_7 |
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| [»] scaffold0150 (1 HSPs) |
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| [»] scaffold1202 (1 HSPs) |
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Alignment Details
Target: scaffold0150 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 6481 - 6714
Alignment:
| Q |
1 |
tcatagattgtgatataagataaattagagtgttgttgtgagaatatttgtaaatgttgcttgtgggtgacgtgttagaacagtggtgtttaggtgggtt |
100 |
Q |
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| T |
6481 |
tcatagattgtgatataagataaattagagtgttgttgtgagaatatttgtaaatgttgcttgtggttgacgtgctagaacagtggtgtttaggtgggtt |
6580 |
T |
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| Q |
101 |
agtttatttaaagattaaaggaatttgggttctta-----nnnnnnnnacaattagaaaagaagtgtatgtaacgatgctttgagggacttggtcgggat |
195 |
Q |
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| T |
6581 |
agtttatttaaagattaaaggaatttgatttcttatttttttttttttacaattagaaaagaagtgtatgtaacgatgcttggagggaccttatcgggat |
6680 |
T |
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| Q |
196 |
tttacaaatttaactataagagataccaacatgt |
229 |
Q |
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| T |
6681 |
tttacaaatttaactaaaagagataccaacatgt |
6714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1202 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: scaffold1202
Description:
Target: scaffold1202; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 1512 - 1280
Alignment:
| Q |
1 |
tcatagattgtgatataagataaattagagtgttgttgtgagaatatttgtaaatgttgcttgtgggtgacgtgttagaacagtggtgtttaggtgggtt |
100 |
Q |
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| T |
1512 |
tcatagattgtgatataagataaattagagtgttgttgtgagaatatttgtaaatgttgcttgtggttgacgtgctagaacagtggtgtttaggtgggtt |
1413 |
T |
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| Q |
101 |
agtttatttaaagattaaaggaatttgggttctta----nnnnnnnnacaattagaaaagaagtgtatgtaacgatgctttgagggacttggtcgggatt |
196 |
Q |
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| T |
1412 |
agtttatttaaagattaaaggaatttgatttcttattttttttttttacaattagaaaagaagtgtatgtaacgatgcttggagggaccttatcaggatt |
1313 |
T |
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| Q |
197 |
ttacaaatttaactataagagataccaacatgt |
229 |
Q |
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| T |
1312 |
ttacaaatttaacttacagagataccaacatgt |
1280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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