View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9171_low_12 (Length: 259)

Name: NF9171_low_12
Description: NF9171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9171_low_12
NF9171_low_12
[»] chr5 (3 HSPs)
chr5 (17-199)||(8239119-8239299)
chr5 (86-189)||(17192991-17193096)
chr5 (86-168)||(37330800-37330886)
[»] chr6 (1 HSPs)
chr6 (86-199)||(15058823-15058936)
[»] chr8 (2 HSPs)
chr8 (96-198)||(29421889-29421987)
chr8 (86-166)||(1193023-1193105)
[»] chr2 (2 HSPs)
chr2 (86-199)||(7727484-7727598)
chr2 (86-197)||(4834534-4834646)
[»] chr7 (1 HSPs)
chr7 (145-197)||(30393241-30393293)


Alignment Details
Target: chr5 (Bit Score: 134; Significance: 8e-70; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 8239119 - 8239299
Alignment:
Q  17 aattttaaccatatttaatagagtctcgtctcacatttttt-aattcatacggcttgaagnnnnnnnnnntagcaccacaacctcctgtatttcaataaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||           ||||||||||||||||||||||||||||||    
T  8239119 aattttaaccatatttaatagagtctcgtctcacatttttttaattcatacggtttgaa---aaaaaaaatagcaccacaacctcctgtatttcaataaa 8239215  T
Q  116 agcggactttacaccaatgcacaataaacacatgcattcgtgaattttcaagaagaaatttgtcgcactatatagcagtgctgt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8239216 agcggactttacaccaatgcacaataaacacatgcattcgtgaattttcaagaagaaatttgtcgcactatatagcagtgctgt 8239299  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 86 - 189
Target Start/End: Complemental strand, 17193096 - 17192991
Alignment:
Q  86 tagcaccacaacctcctgtatttcaataaaagcggactttacaccaatgcacaataaacac--atgcattcgtgaattttcaagaagaaatttgtcgcac 183  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||  |||||||||||||||||||| ||  ||||| ||||||    
T  17193096 tagcaccacaaccttctgtatttcgataaaagcggactttacaccaatgcaaaataaacacatatgcattcgtgaattttcaaaaaacaatttatcgcac 17192997  T
Q  184 tatata 189  Q
    ||||||    
T  17192996 tatata 17192991  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 168
Target Start/End: Original strand, 37330800 - 37330886
Alignment:
Q  86 tagcaccacaacctcctgtatttcaataaaagcggactttacaccaatgcacaataaac----acatgcattcgtgaattttcaaga 168  Q
    |||||||||||||||||||||| || ||| | || ||||||||| ||| |||| |||||    | ||||||| ||||||||||||||    
T  37330800 tagcaccacaacctcctgtattccattaataccgaactttacactaatacacattaaacatatatatgcatttgtgaattttcaaga 37330886  T

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Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 86 - 199
Target Start/End: Original strand, 15058823 - 15058936
Alignment:
Q  86 tagcaccacaacctcctgtatttcaataaaagcggactttacaccaatgcacaataaacacatgcattcgtgaattttcaagaagaaatttgtcgcacta 185  Q
    |||||||| | ||||||||||| || ||| | ||||||||||||||||||| | ||||||||||||||||||||||||||||| | ||||||||||||||    
T  15058823 tagcaccatatcctcctgtattccactaataccggactttacaccaatgcatattaaacacatgcattcgtgaattttcaagaggcaatttgtcgcacta 15058922  T
Q  186 tatagcagtgctgt 199  Q
    |||||||| |||||    
T  15058923 tatagcagcgctgt 15058936  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 96 - 198
Target Start/End: Complemental strand, 29421987 - 29421889
Alignment:
Q  96 acctcctgtatttcaataaaagcggactttacaccaatgcacaataaacacatgcattcgtgaattttcaagaagaaatttgtcgcactatatagcagtg 195  Q
    ||||||| |||| ||||||||| |||||||||||||||||||||    || ||||||||||||||||||||||||  ||||| |||||||||||||||||    
T  29421987 acctcctatattccaataaaagtggactttacaccaatgcacaa----catatgcattcgtgaattttcaagaagctatttgacgcactatatagcagtg 29421892  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 166
Target Start/End: Original strand, 1193023 - 1193105
Alignment:
Q  86 tagcaccacaacctcctgtatttcaataaaagcggactttacaccaatgcacaataaacacat--gcattcgtgaattttcaa 166  Q
    ||||||||||||||| |||| | || ||  | |||||||||||||||| |||| |||||||||  ||||||||||||||||||    
T  1193023 tagcaccacaacctcttgtactccactagtaccggactttacaccaatacacattaaacacatacgcattcgtgaattttcaa 1193105  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 199
Target Start/End: Original strand, 7727484 - 7727598
Alignment:
Q  86 tagcaccacaacctcctgtatttcaataaaagcggactttacaccaatgcacaataaacacat--gcattcgtgaattttcaagaagaaatttgtcgcac 183  Q
    ||||||||||||||||| |||| ||  || ||||||||||||||||||||| | |||||||||  ||||  | |||||||||||| | ||||||||||||    
T  7727484 tagcaccacaacctcctctattccacaaatagcggactttacaccaatgca-attaaacacatatgcatctgggaattttcaagaggcaatttgtcgcac 7727582  T
Q  184 tatatagcagtgctgt 199  Q
    ||||||||||||||||    
T  7727583 tatatagcagtgctgt 7727598  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 86 - 197
Target Start/End: Original strand, 4834534 - 4834646
Alignment:
Q  86 tagcaccacaacctcctgtatttcaataaaagcggactttacaccaatgcacaataaacacat--gcattcgtgaattttcaagaagaaatttgtcgcac 183  Q
    ||||||||||||||| |||||| || ||| | |||||||||||||||| |||| |||||||||  ||| |||||||||||||||| | |||| ||||| |    
T  4834534 tagcaccacaacctc-tgtattccactaataccggactttacaccaatacacattaaacacatatgcaatcgtgaattttcaagaggcaattagtcgcgc 4834632  T
Q  184 tatatagcagtgct 197  Q
    ||||||||||||||    
T  4834633 tatatagcagtgct 4834646  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 30393241 - 30393293
Alignment:
Q  145 acatgcattcgtgaattttcaagaagaaatttgtcgcactatatagcagtgct 197  Q
    ||||||||| |||||||||||||| | ||||||| ||||| ||||||||||||    
T  30393241 acatgcatttgtgaattttcaagaggcaatttgtggcactgtatagcagtgct 30393293  T

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