View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9171_low_18 (Length: 219)
Name: NF9171_low_18
Description: NF9171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9171_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 26165662 - 26165516
Alignment:
| Q |
17 |
actcttaaattattaatttcacataaataaaagctattctcagggaga--aaaaaggggatcgtgtacatcgtaattgtcacactcatttcgaatttgtc |
114 |
Q |
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| T |
26165662 |
actcttaaattattaatttcacataaataaaagctattctcagggagagaaaaaaggggatcgtgtacatcgtaattgtcacactcatttcgaatttgtc |
26165563 |
T |
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| Q |
115 |
tttacaaaccatgtcgagggagcatattaaggaatgtattatcttaa |
161 |
Q |
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| T |
26165562 |
tttacaaaccatgtcgagggagcatattaaggaatgtattatcttaa |
26165516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 26183160 - 26183087
Alignment:
| Q |
88 |
aattgtcacactcatttcgaatttgtctttacaaaccatgtcgagggagcatattaaggaatgtattatcttaa |
161 |
Q |
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| T |
26183160 |
aattgtcacactcatttcaaatttgtctttacaaaccatgtcgagggagcatattaaggaatggattatcttaa |
26183087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 125
Target Start/End: Complemental strand, 26194256 - 26194184
Alignment:
| Q |
53 |
ttctcagggagaaaaaaggggatcgtgtacatcgtaattgtcacactcatttcgaatttgtctttacaaacca |
125 |
Q |
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| T |
26194256 |
ttctcggggagaaaaaaggggatcgtgtactgtgaaattgttacactaacttcaaattcgtctttacaaacca |
26194184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 26177849 - 26177782
Alignment:
| Q |
58 |
agggagaaaaaaggggatcgtgtacatcgtaattgtcacactcatttcgaatttgtctttacaaacca |
125 |
Q |
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| T |
26177849 |
agggagaaaaaaggggatcgtgtactgtgaaattgttacactaacttcaaattcgtctttacaaacca |
26177782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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