View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9171_low_2 (Length: 497)
Name: NF9171_low_2
Description: NF9171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9171_low_2 |
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| [»] scaffold1075 (1 HSPs) |
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Alignment Details
Target: scaffold1075 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: scaffold1075
Description:
Target: scaffold1075; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 8 - 486
Target Start/End: Complemental strand, 1601 - 1123
Alignment:
| Q |
8 |
atagagtttgcttgtatgtgcttttatgaataagaatgtgactaattgtatattttatggtgtttagatctgcaacaatcttgacaccattgatggacca |
107 |
Q |
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| T |
1601 |
atagagtttgcttgtatgtgcctttaagaataagcatgtgactaactgtatattttatggtgtttagatctgcaacaatcttgacaccattgatggacca |
1502 |
T |
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| Q |
108 |
gataaagatgttctgattagtcttgctcaatgtccttttgataaactaagaaggtacaatgcatacaatgtcaatggattcaaatttcgaacaatggcgc |
207 |
Q |
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|||||||||||||| ||||||||||||||| |||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1501 |
gataaagatgttctcattagtcttgctcaaggtccttttgataaagtaagaaggttcactgcatacaatgtcaatggattcaaatttcgaacaatggcgc |
1402 |
T |
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| Q |
208 |
gagacgagttactaaaaacacaaaactgtggagtttttggcatgtttgggacacgaagttattcaagcaatagtgatgcccaaatgagatttggaggggt |
307 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1401 |
gagacgagttattaaaaacacaaaactgtggagtttttggcatgtttgggactcgaagttattcaagcaatagtgatgcccaaatgagatttggaggggt |
1302 |
T |
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| Q |
308 |
gccttactatggaagattaatagacatcattgaacctcgttatgatggcttcacagtgccaatgtttaaatgtgaatgggctaataccacaaacccaaga |
407 |
Q |
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||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1301 |
gccttactatggaagattaatagacatcattgagcttcgctatgatggcttcacagtgccaatgtttaaatgtgaatgggctaataccacaaacccaaga |
1202 |
T |
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| Q |
408 |
aacattaaaatagataagttgggttttaagtctataaaccttacaagattaacacatactggacaacatgaagatgatg |
486 |
Q |
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| T |
1201 |
aacattaaaatagataagttgggttttaagtctataaactttacaagattaacacatactggacaacatgaagatgatg |
1123 |
T |
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