View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9171_low_6 (Length: 387)
Name: NF9171_low_6
Description: NF9171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9171_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 102 - 370
Target Start/End: Original strand, 11905364 - 11905632
Alignment:
| Q |
102 |
cccgctaccatgttgagattctgtgcatatttttagccgttggattcattataatctgagggctaagaagtgatgaccgtggaacaatgtgaaccatgtg |
201 |
Q |
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| T |
11905364 |
cccgctaccatgttgagattctgtgcatatttttagccgttggattcattataatctgagggctaagaagtgatgaccgtggaacaatgtgaaccatgtg |
11905463 |
T |
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| Q |
202 |
gaatctgagtaatcaaaggtttatatctaagatcgtggatgagtttaaaccgttggatttgtgtttgaatcggagggatgagaatttggagtatggggga |
301 |
Q |
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| T |
11905464 |
gaatctgagtaatcaaaggtttatgtctaagatcgtggatgagtttaaaccgttggatttgtgtttgaatcggagggatgagaatttggagtatggggga |
11905563 |
T |
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| Q |
302 |
ccatgcgtggtgtgtgcaagaatggggcaattctggatggttcttcaattacatcaaaggtataaatgc |
370 |
Q |
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| T |
11905564 |
ccatgcgtggtgtgtgcaagaatggggcaattctggatggttcttcaattacatcaaaggtataaatgc |
11905632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 11905279 - 11905320
Alignment:
| Q |
17 |
cctgtttctattccttccatcttcttcttccaaatcttctca |
58 |
Q |
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| T |
11905279 |
cctgtttctactccttccatcttcttcttccaaatcttctca |
11905320 |
T |
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