View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9172_high_2 (Length: 369)
Name: NF9172_high_2
Description: NF9172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9172_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 4884421 - 4884778
Alignment:
| Q |
1 |
attattacttgcatatttctaatcacaatgagtttgacaaaaccacatttcgatggaagtttttacatagatacaccgtaattcagacaaactcaccgtc |
100 |
Q |
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| T |
4884421 |
attattaattgcatatttctaatcacaatgagtttgacaaaaccacgtttcgatggaagtttttacatagatacactgtaattcagacaaactcaccgtc |
4884520 |
T |
|
| Q |
101 |
aatctaaaaatgtatagttggatcgttggacacatcaacctcttacaagtatgtgatctataagctta----gtgtcaactttcaagatgatttcttcct |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4884521 |
aatctaaaaatgtatagttggatcgttggacacatcaacctcttacaagtatgtgatctataagcttaattagtgtcaactttcaagatgatttcttcct |
4884620 |
T |
|
| Q |
197 |
tctagttcaagtcttcaacttaacaaaatcaaaaccatatataacattttatcatagcactaaaattttaaccatatgtacacaaaattgacagaaacaa |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4884621 |
tctagttcaagtcttcaacttaacaaaatcaaaaccatatataacattttatcatagcactaaaattttaaccatatgtacacaaaattgacagaaacaa |
4884720 |
T |
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| Q |
297 |
agtttattttcttctttactaagaaaataataagaaaaagagaaag-agacaagtaat |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4884721 |
agtttattttcttctttactaagaaaataataagaaaaagagaaagaagacaagtaat |
4884778 |
T |
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