View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9172_low_1 (Length: 721)
Name: NF9172_low_1
Description: NF9172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9172_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 347 - 686
Target Start/End: Original strand, 21031836 - 21032172
Alignment:
| Q |
347 |
catgaattgaagtcaaggtaaggtacaagttaattagagcactgaaaaagagagagaaa-gggagagatgtggtaaagattaaattggtgtgaaatgtca |
445 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21031836 |
catgaattgaagtcaaggtaaggtacaagttaattagagcactgaaaaagagagagaaaagggagagatgtggtaaagattaaattggtgtgaaatgtca |
21031935 |
T |
|
| Q |
446 |
tttcaatatacagtatatgtatccagcagaagggatatttacactgttgtattcatctgtatatatcagctagcccaaacaacaaaacatgggctccaca |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21031936 |
tttcaatatacagtatatgtatccagcagaagggatatttacactgttgtattcatctgtatatatcagctagcccaaacaacaaaacatgggctccaca |
21032035 |
T |
|
| Q |
546 |
tcttgtagttttaacctttttcccattctttgtttcnnnnnnnnnnnnnnnnttactcaaagctgcaaataagatcgacccacttcatttcatctgcagc |
645 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21032036 |
tcttgtagttttaacctttttcccattctttgtttc----ctctctctctctttactcaaagctgcaaataagatcgacccacttcgtttcatctgcagc |
21032131 |
T |
|
| Q |
646 |
atataccttattacaaacttgagggaccattaatatgatat |
686 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
21032132 |
atataccttattacaaacatgagggaccattaatatgatat |
21032172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 55 - 250
Target Start/End: Original strand, 21031541 - 21031739
Alignment:
| Q |
55 |
ttgcaattatagttatcccatgaacc---ttattatggtaaaaagctgataaatgcaaccacaattatatttgtgatgcagttgctaaggcctataaaac |
151 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
21031541 |
ttgcaattatagttatctcatgaaccatcttattatggtaaaacgctggtaaatgcaaccacaattatatttgtgatgcagttgctaatgcctataaaac |
21031640 |
T |
|
| Q |
152 |
tgttataatgcagccgaaattatggttgtgaactgcaattttaaaactaagaataatgctaataacagtcattcaaatacacaacaagacataaaatgg |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
21031641 |
tgttataatgcagccgaaattatggttgtgaactgcaattttaaaactaagaataatgctaataacagttattcaaatacacaacaagacataaaatgg |
21031739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University