View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9172_low_3 (Length: 571)
Name: NF9172_low_3
Description: NF9172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9172_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 326 - 557
Target Start/End: Complemental strand, 10314130 - 10313899
Alignment:
| Q |
326 |
acaaagtcgtatcttattcttaggtaaatgtcttgatcttgcactgtgattggtcttctattgtaatcttcaattcaatgtattcagtcctttaattggt |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10314130 |
acaaagtcgtatcttattcttaggtaaatgtcttgatcttgcactgtgattggtcttctattgtaatcttcaattcaatgtattcagtcctttaattggt |
10314031 |
T |
|
| Q |
426 |
tttaatttgtctttgtcgttactctccaaactcttatattgtggtaaaattcaaagcatgttctctatcaattcttgctgcaattaactaattattaatg |
525 |
Q |
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||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
10314030 |
tttaatttgtctttgtcgttactctgcaaactcttatactgtggtaaaattgaaagcatgttctctatcaattcttactgcaattaactaattattaatg |
10313931 |
T |
|
| Q |
526 |
acattgaaatcaaacatgtcttggggtctctg |
557 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
10313930 |
acattgaaatcaaacatgtcttggggtctctg |
10313899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 330
Target Start/End: Complemental strand, 15828833 - 15828501
Alignment:
| Q |
19 |
ggttggttcatgacttgtttcccccaaacccatcgatttaactgtcaaacccctcacccacccatcttctctgattgattcccta--------------- |
103 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
15828833 |
ggttggttcatgactggtttcccccaaacccatcgattcaaccgtcaaacccctcaa--acccatcttctctgattgattccctatgctcatcacttctc |
15828736 |
T |
|
| Q |
104 |
------atctcagtgtctctggccaccgccgtcaagccatcgtcgttgttattggttccagtccctcgtcgaagcctcctctta--aggttagtctgaag |
195 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||| | |
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| T |
15828735 |
acgctaatctcaatgtctctggccaccgccgtcaagccatcgtcgttgttattggtttcattccctcgtcgaagcctcctcttatcaggttagtctgacg |
15828636 |
T |
|
| Q |
196 |
tttgcgtagatggaataaaactaacccatttggtatttttcttcaatttagttggtgttgtgattattgatatattgtagaaaattacaaataagtgtga |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15828635 |
tttgcgtagatggaataaaactaacccatttggtatttttcttcaatttagttggtgttgtgattattgatatattgtagaaaattacaaataagtgtga |
15828536 |
T |
|
| Q |
296 |
ctaatgcaattgtatttgcagttgaaaatcacaaa |
330 |
Q |
| |
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|||||||||||||||||||||||| |||||||||| |
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| T |
15828535 |
ctaatgcaattgtatttgcagttggaaatcacaaa |
15828501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 326 - 557
Target Start/End: Complemental strand, 15828470 - 15828239
Alignment:
| Q |
326 |
acaaagtcgtatcttattcttaggtaaatgtcttgatcttgcactgtgattggtcttctattgtaatcttcaattcaatgtattcagtcctttaattggt |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15828470 |
acaaagtcgtatcttattcttaggtaaatgtcttgatcatgcactgtgattagtcttctattgtaatcttcaattcaatgtattcagtcctttaattggt |
15828371 |
T |
|
| Q |
426 |
tttaatttgtctttgtcgttactctccaaactcttatattgtggtaaaattcaaagcatgttctctatcaattcttgctgcaattaactaattattaatg |
525 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
15828370 |
tttaatttgtctttgtcgttactctgcaaactcttatattgtggtaaaattgaaagcatgttctctatcaattcttactgcaattaactatttattaatg |
15828271 |
T |
|
| Q |
526 |
acattgaaatcaaacatgtcttggggtctctg |
557 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
15828270 |
acattgaaatcaaacatgtcttggggtctctg |
15828239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 330
Target Start/End: Complemental strand, 10314489 - 10314161
Alignment:
| Q |
19 |
ggttggttcatgacttgtttcccccaaacccatcgatttaactgtcaaacccctcacccacccatcttctctgattgattcccta--------------- |
103 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
10314489 |
ggttggttcatgactggtttcccccaaacccatcgattcaaccgtcaaacccctcaa--acccatcttctctgattgattccctatgctcatcacttctc |
10314392 |
T |
|
| Q |
104 |
------atctcagtgtctctggccaccgccgtcaagccatcgtcgttgttattggttccagtccctcgtcgaagcctcctctta--aggttagtctgaag |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||| |
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| T |
10314391 |
acgctaatctcagtgtctctggccaccgccgtcaagccatcgtcgttgttattggttcgattccctcgtcgaagcctcctcttatcaggttagtctgaag |
10314292 |
T |
|
| Q |
196 |
tttgcgtagatggaataaaactaacccatttggtatttttcttcaatttagttggtgttgtgattattgatatattgtagaaaattacaaataagtgtga |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
10314291 |
tttgcgtagatggaataaaactaacccatttggtatttttcttcaatttagttggtgttgtgattattgatatattgtagaaaattac----aagtgtga |
10314196 |
T |
|
| Q |
296 |
ctaatgcaattgtatttgcagttgaaaatcacaaa |
330 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
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| T |
10314195 |
ctaatgcaattgtatttgcagttggaaatcacaaa |
10314161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 538
Target Start/End: Complemental strand, 52220111 - 52220054
Alignment:
| Q |
481 |
gcatgttctctatcaattcttgctgcaattaactaattattaatgacattgaaatcaa |
538 |
Q |
| |
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||||||||||| ||||| ||| ||||||||||||||||| | || |||||||||||| |
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| T |
52220111 |
gcatgttctctttcaatgcttattgcaattaactaattatcagtggcattgaaatcaa |
52220054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 19 - 330
Target Start/End: Complemental strand, 16428669 - 16428337
Alignment:
| Q |
19 |
ggttggttcatgacttgtttcccccaaacccatcgatttaactgtcaaacccctcacccacccatcttctctgattgattcccta--------------- |
103 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
16428669 |
ggttggttcatgactggtttcccccaaacccatcgattcaaccgtcaaacccctcaa--acccatcttctctgattgattccctatgctcatcacttctc |
16428572 |
T |
|
| Q |
104 |
------atctcagtgtctctggccaccgccgtcaagccatcgtcgttgttattggttccagtccctcgtcgaagcctcctctta--aggttagtctgaag |
195 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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|
| T |
16428571 |
acgctaatctcaatgtctctggccaccgccgtcaagccatcgtcgttgttattggttccattccctcgtcgaagcctcctcttatcaggttagtctgaag |
16428472 |
T |
|
| Q |
196 |
tttgcgtagatggaataaaactaacccatttggtatttttcttcaatttagttggtgttgtgattattgatatattgtagaaaattacaaataagtgtga |
295 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16428471 |
tttacgtagatggaataaaactaacccatttggtatttttcttcaatttagttggtgttgtgattattgatatattgtagaaaattacaaataagtgtga |
16428372 |
T |
|
| Q |
296 |
ctaatgcaattgtatttgcagttgaaaatcacaaa |
330 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
|
|
| T |
16428371 |
ctaatgcaattgtatttgcagttggaaatcacaaa |
16428337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 326 - 557
Target Start/End: Complemental strand, 16428306 - 16428074
Alignment:
| Q |
326 |
acaaagtcgtatctta-ttcttaggtaaatgtcttgatcttgcactgtgattggtcttctattgtaatcttcaattcaatgtattcagtcctttaattgg |
424 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
16428306 |
acaaagtcgtatcttaattcttaggtaaatgtcttgatcttgcactgtgattggtcttctattgtaatcttcaattcaatgtattcaatcctttaattgg |
16428207 |
T |
|
| Q |
425 |
ttttaatttgtctttgtcgttactctccaaactcttatattgtggtaaaattcaaagcatgttctctatcaattcttgctgcaattaactaattattaat |
524 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
16428206 |
ttttaatttgtctttgtcgttactctgcaaactcttatattgtggtaaaattgaaagcatgttctctatcaattcttactgcaattaactaattattaat |
16428107 |
T |
|
| Q |
525 |
gacattgaaatcaaacatgtcttggggtctctg |
557 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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|
| T |
16428106 |
gacattgaaatcaaacatgtcttggggtctctg |
16428074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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