View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9172_low_6 (Length: 356)
Name: NF9172_low_6
Description: NF9172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9172_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 28476585 - 28476923
Alignment:
| Q |
1 |
gaacctacgtttctcggaacagaaatatctacgaagaggcgttttcctcccatttcttcgcttgctaaaggaagttccttaacattttgtttcaaaatca |
100 |
Q |
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| T |
28476585 |
gaacctacgtttctcggaacagaaatatctacgaagaggcgttttcctcccatttcttcgcttgctaaaggaagttccttaacattttgtttaaaaatca |
28476684 |
T |
|
| Q |
101 |
aaggattctctgatgcagtgctagtgaaaacaacatctgcttcaccaatacattcgagcatttccgaaagcggtttgtagattatctcaacatcatttat |
200 |
Q |
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| T |
28476685 |
aaggattctctgatgcagtgctagtgaaaacaacatctgcttcaccaatacattcaagcatttccgaaagcggtttgtagattatctcaacatcatttat |
28476784 |
T |
|
| Q |
201 |
ttcttcacggattgctgcgactctcccttcggttctattaacaactaccatctttttacacccttttgcaaccaaatgtttgatcacaagcttccccatt |
300 |
Q |
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| T |
28476785 |
ttcttcacggattgctgcgactctcccttcggttctattaacaactaccatctttttacacccttttgcaaccaaatgtttgatcacaagcttccccatt |
28476884 |
T |
|
| Q |
301 |
ttaccagctccaataacaagcattcttgcatttccatgt |
339 |
Q |
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| T |
28476885 |
ttaccagctccaataacaagcattcttgcatttccatgt |
28476923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 109 - 308
Target Start/End: Complemental strand, 51957961 - 51957762
Alignment:
| Q |
109 |
tctgatgcagtgctagtgaaaacaacatctgcttcaccaatacattcgagcatttccgaaagcggtttgtagattatctcaacatcatttatttcttcac |
208 |
Q |
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| T |
51957961 |
tctgatgctgtactggtgaatactacatctgcttcacaaacacaagagagcatttctgaaagaggtttgtaaattatttcaatatccttcagttcttcgc |
51957862 |
T |
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| Q |
209 |
ggattgctgcgactctcccttcggttctattaacaactaccatctttttacacccttttgcaaccaaatgtttgatcacaagcttccccattttaccagc |
308 |
Q |
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| T |
51957861 |
gtattgcagcaactctctcctcggtcctattgacaacaaccatccttgtgcaacctttcgaaaccaaatgtttgatcaccagctttcccatcttcccagc |
51957762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 233 - 299
Target Start/End: Complemental strand, 36828724 - 36828658
Alignment:
| Q |
233 |
ttctattaacaactaccatctttttacacccttttgcaaccaaatgtttgatcacaagcttccccat |
299 |
Q |
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| T |
36828724 |
ttctattaacaacaaccatttttcgacaccctttagcaaccaaatgtttaatcactagcttccccat |
36828658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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