View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9173_high_11 (Length: 220)
Name: NF9173_high_11
Description: NF9173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9173_high_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 24566943 - 24567144
Alignment:
| Q |
19 |
tcaaaaaggtgaattgaaatcaaaattctgaatatggagggatgaaatccgtgcatgattaattgggatgannnnnnnnnnnnnntaattgagattaatt |
118 |
Q |
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| T |
24566943 |
tcaaaaaggtgaattgaaatcaaaattctgaatatggagggatgaaatccgtgcatgattaattgggatgatttttttaaaaaaataattgagattaatt |
24567042 |
T |
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| Q |
119 |
aatgtatgaacatttaaagcttgcgctaaagatgaggcattgcatttttggtggggtttatgaaaattggcaagattcttctatgatttatgggtagctt |
218 |
Q |
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| T |
24567043 |
aatgtatgaacatttaaagcttgcgctaaagatgaggcattgcatttttggtggggtttatgaaaattggcaagattcttctatgatttatgggtagctt |
24567142 |
T |
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| Q |
219 |
ta |
220 |
Q |
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|| |
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| T |
24567143 |
ta |
24567144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 16615407 - 16615447
Alignment:
| Q |
19 |
tcaaaaaggtgaattgaaatcaaaattctgaatatggaggg |
59 |
Q |
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| T |
16615407 |
tcaaaaacttgaattgaaatcaaaattctgaatatggaggg |
16615447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 45532307 - 45532267
Alignment:
| Q |
19 |
tcaaaaaggtgaattgaaatcaaaattctgaatatggaggg |
59 |
Q |
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| T |
45532307 |
tcaaaaacttgaattgaaatcaaaattctaaatatggaggg |
45532267 |
T |
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