View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9173_high_3 (Length: 560)
Name: NF9173_high_3
Description: NF9173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9173_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 335 - 549
Target Start/End: Complemental strand, 30916016 - 30915800
Alignment:
| Q |
335 |
ttgtcctcaggggttctctgacatggttgctttttcagttattcttggactttgtttgcccttttcacttgattagtggtcgatgagtgtatttaatatt |
434 |
Q |
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| T |
30916016 |
ttgtcctcaggggttctctgacatggttgctttttcagttattcttggactttgtttgcccttttcacttgattagtggtcgatgagcgtatttaatatt |
30915917 |
T |
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| Q |
435 |
gtcaaat--acactcttagtaattgtactttcttgattttgtatctaatcttagtttttctttgttgtggatgaaatgaccttctttaaagattttcata |
532 |
Q |
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| T |
30915916 |
gtcaaatacacactcttagtaattgtactttcttgattttgtatctaatcttagtttttcattgttgtagatgaaatgaccttctttaaagattttcata |
30915817 |
T |
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| Q |
533 |
ttgaagttgaacaccaa |
549 |
Q |
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| T |
30915816 |
ttgaagttgaacgccaa |
30915800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 30916338 - 30916126
Alignment:
| Q |
1 |
ccttcattttaccttcaagttcatctatgcacttcgaagctttttcaataacctaagtcgatgttttttcattgttctcaaggttcaagctttttgtcgt |
100 |
Q |
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| T |
30916338 |
ccttcattttaccttcaagttcatctatgcacttcgaagctttttcaataacctgagtcgatgttttttcattgttctcaagtttcaagctttttgtcgt |
30916239 |
T |
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| Q |
101 |
cgtaacctcattcctttgttggttaatacatgcttgatttcattttcnnnnnnngctttattacactttccaatttataaatgtttagaaaaaggaattt |
200 |
Q |
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| T |
30916238 |
cgtaacctcattcctttgttggttaatacatgcttgctttcattttc-tattttgctttattacaccttccaatttataaatgtttagaaaaagggattt |
30916140 |
T |
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| Q |
201 |
ccagaatggtggaa |
214 |
Q |
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| | | |||||||| |
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| T |
30916139 |
ctacagtggtggaa |
30916126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 224 - 289
Target Start/End: Complemental strand, 30916079 - 30916014
Alignment:
| Q |
224 |
ggttgtacttcctttttctatttggatgcagtattttatctgtaccttagggtttacttgatgttg |
289 |
Q |
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| T |
30916079 |
ggttgtacttcctttttctatttggatgcagtattttatctataccttagggtttacttgatgttg |
30916014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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