View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9173_high_4 (Length: 446)
Name: NF9173_high_4
Description: NF9173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9173_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 421; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 18 - 438
Target Start/End: Original strand, 1801275 - 1801695
Alignment:
| Q |
18 |
aaacatatataaccatgatcaagactgtattctatattattcaactaacccttattaatccatcatatactgtgtataataaatgtgagaaaaagacaaa |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1801275 |
aaacatatataaccatgatcaagactgtattctatattattcaactaacccttattaatccatcatatactgtgtataataaatgtgagaaaaagacaaa |
1801374 |
T |
|
| Q |
118 |
gcaaagtacctcttgattaaaacttgtgaaattaagattttcactaagcaccaatgcagtgataaaaactgcaacagaaattttcttagggaatttttcc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1801375 |
gcaaagtacctcttgattaaaacttgtgaaattaagattttcactaagcaccaatgcagtgataaaaactgcaacagaaattttcttagggaatttttcc |
1801474 |
T |
|
| Q |
218 |
atagcaacagataagggtatccctccaaaactatgacccacaagaatcaccttctcctttggaggaagagattccataaatgtcatgaaaggttcataat |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1801475 |
atagcaacagataagggtatccctccaaaactatgacccacaagaatcaccttctcctttggaggaagagattccataaatgtcatgaaaggttcataat |
1801574 |
T |
|
| Q |
318 |
attgtgaaattgaatgaatctcttgaacctggattggactgataccacaagcagccaagtcaatagttgtaacattatgaccagctaatttaagcatagt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1801575 |
attgtgaaattgaatgaatctcttgaacctggattggactgataccacaagcagccaagtcaatagttgtaacattatgaccagctaatttaagcatagt |
1801674 |
T |
|
| Q |
418 |
tgcaaccttataccaacacca |
438 |
Q |
| |
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||||||||||||||||||||| |
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| T |
1801675 |
tgcaaccttataccaacacca |
1801695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 96 - 438
Target Start/End: Original strand, 1784545 - 1784885
Alignment:
| Q |
96 |
ataaatgtgagaaaaagacaaagcaaagtacctcttgattaaaacttgtgaaattaagattttcactaagcaccaatgcagtgataaaaactgcaacaga |
195 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||| | | ||||||||||||||| ||||||| | |||| |||||||| |||||||||||| || |
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| T |
1784545 |
ataaatgtgagaaaaagaca--gcaaagtacctcttgaattacacttgtgaaattaagggtttcactcataaccagtgcagtgacaaaaactgcaaccga |
1784642 |
T |
|
| Q |
196 |
aattttcttagggaatttttccatagcaacagataagggtatccctccaaaactatgacccacaagaatcaccttctcctttggaggaagagattccata |
295 |
Q |
| |
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|| |||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1784643 |
aactttcttagagaacttttccatagcaacagataagggtatccctccataactatgacccacaagaatcaccttctcctttggaggaagagattccata |
1784742 |
T |
|
| Q |
296 |
aatgtcatgaaaggttcataatattgtgaaattgaatgaatctcttgaacctggattggactgataccacaagcagccaagtcaatagttgtaacattat |
395 |
Q |
| |
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|||||||| || ||||||||||||| |||||||||||||||||||||||| || |||||| ||||||| ||||||||| |||||||||||||||||||| |
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| T |
1784743 |
aatgtcatcaatggttcataatattttgaaattgaatgaatctcttgaacttgtattggattgatacctgaagcagccatgtcaatagttgtaacattat |
1784842 |
T |
|
| Q |
396 |
gaccagctaatttaagcatagttgcaaccttataccaacacca |
438 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1784843 |
gaccagctgatttaagcatagttgcaaccttataccaacacca |
1784885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 94 - 438
Target Start/End: Original strand, 1777304 - 1777651
Alignment:
| Q |
94 |
taataaatgtgagaaaaagacaaagcaaagtacctcttgattaaaacttgtgaaattaagattttcactaagcaccaatgcagtgataaaaactgcaaca |
193 |
Q |
| |
|
|||||||||| | ||||||||||| ||||||||||||||| |||||||||||||| || |||||||||| ||| |||||||||| ||||||||||| | |
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| T |
1777304 |
taataaatgtaataaaaagacaaaacaaagtacctcttgaagtaaacttgtgaaattcaggttttcactaatcacgaatgcagtgacaaaaactgcaaga |
1777403 |
T |
|
| Q |
194 |
gaaattttcttagggaatttttccatagcaacagataagggtatccctccaaaactatgacccacaagaatcaccttctcctttggaggaagagattcca |
293 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
1777404 |
gaaattttcttagggaacttttccatagcaacagataagggtatccctccaaaactatgacccacaagaatcaccttttcctttggaggaagagattcta |
1777503 |
T |
|
| Q |
294 |
taaatgtcatgaaaggttcataatattgtgaaat---tgaatgaatctcttgaacctggattggactgataccacaagcagccaagtcaatagttgtaac |
390 |
Q |
| |
|
|||||| || |||||||||| ||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||| || ||||| |
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|
| T |
1777504 |
taaatgaaatcaaaggttcatgatattttgaaattgatgaatgaatctcttgaacctgtattggactgataccacaagcagccaattcaattgtggtaac |
1777603 |
T |
|
| Q |
391 |
attatgaccagctaatttaagcatagttgcaaccttataccaacacca |
438 |
Q |
| |
|
||||||||||||| |||| | ||| ||||||||||||||||||||||| |
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|
| T |
1777604 |
attatgaccagctgatttcaacatggttgcaaccttataccaacacca |
1777651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 155 - 438
Target Start/End: Original strand, 1772402 - 1772685
Alignment:
| Q |
155 |
ttttcactaagcaccaatgcagtgataaaaactgcaacagaaattttcttagggaatttttccatagcaacagataagggtatccctccaaaactatgac |
254 |
Q |
| |
|
|||| ||||||||| | ||||| | |||||||||||| || ||||| | ||||| |||||||||||||||||| | | ||| || | |||||||| |
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| T |
1772402 |
ttttgactaagcacataagcagtaacaaaaactgcaactgagattttttgtgggaacttttccatagcaacagatgtagacaccccacccagactatgac |
1772501 |
T |
|
| Q |
255 |
ccacaagaatcaccttctcctttggaggaagagattccataaatgtcatgaaaggttcataatattgtgaaattgaatgaatctcttgaacctggattgg |
354 |
Q |
| |
|
| |||||||| |||||||| ||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||| || || ||||| |
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| T |
1772502 |
caacaagaattaccttctcatttggaggaagagattccataaatgtcatcaagggttcataatattttgaaattgaatgaatctcttggacttgtattgg |
1772601 |
T |
|
| Q |
355 |
actgataccacaagcagccaagtcaatagttgtaacattatgaccagctaatttaagcatagttgcaaccttataccaacacca |
438 |
Q |
| |
|
| ||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||| |
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|
| T |
1772602 |
attgatacctgaagcagccaattcaatagttgtaacattatgaccagctgatttaagcatagttaccaccttataccaacacca |
1772685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 176 - 438
Target Start/End: Original strand, 1768752 - 1769014
Alignment:
| Q |
176 |
gtgataaaaactgcaacagaaattttcttagggaatttttccatagcaacagataagggtatccctccaaaactatgacccacaagaatcaccttctcct |
275 |
Q |
| |
|
||||| |||||||||||| | ||||| | |||| | ||||||||||||| ||| | | | |||||||| ||||||||| ||||||| ||| ||||||| |
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|
| T |
1768752 |
gtgatgaaaactgcaacaaagattttgtgagggtagttttccatagcaatagacacagacaaccctccaagactatgaccaacaagaaccactttctcct |
1768851 |
T |
|
| Q |
276 |
ttggaggaagagattccataaatgtcatgaaaggttcataatattgtgaaattgaatgaatctcttgaacctggattggactgataccacaagcagccaa |
375 |
Q |
| |
|
||||||| || |||||||||||||| ||||||| || |||| ||||||||||||| |||||| | ||| ||||| || ||||||||||||||| |
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|
| T |
1768852 |
caagaggaagtgactccataaatgtcatcaaaggttgatggtattcagaaattgaatgaacctcttgcatctgctttggattggtaccacaagcagccat |
1768951 |
T |
|
| Q |
376 |
gtcaatagttgtaacattatgaccagctaatttaagcatagttgcaaccttataccaacacca |
438 |
Q |
| |
|
||| | | ||| || |||||||||||| |||| || |||||||||||||||||||||||| |
|
|
| T |
1768952 |
gtctagtgctgtgactttatgaccagctgattttagatcagttgcaaccttataccaacacca |
1769014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 65 - 438
Target Start/End: Complemental strand, 25727936 - 25727563
Alignment:
| Q |
65 |
acccttattaatccatcatatactgtgtataataaatgtgagaaaaagacaaagcaaagtacctcttgattaaaacttgtgaaattaagattttcactaa |
164 |
Q |
| |
|
|||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| || || || |||||| || |||||||||| |
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|
| T |
25727936 |
acccttattaattcatcatatactatgtatagtaaatgtgagaaaaagacaaagcaaagtacctcttgaatataatttctgaaatcaaatttttcactaa |
25727837 |
T |
|
| Q |
165 |
gcaccaatgcagtgataaaaactgcaacagaaattttcttagggaatttttccatagcaacagataagggtatccctccaaaactatgacccacaagaat |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25727836 |
gcaccaatgcagtgataaaaactgcaacagaaattttgttagggaatttttccatagcaacagataagggtatccctccaaaactatgacccacaagaat |
25727737 |
T |
|
| Q |
265 |
caccttctcctttggaggaagagattccataaatgtcatgaaaggttcataatattgtgaaattgaatgaatctcttgaacctggattggactgatacca |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
25727736 |
caccttctcctttggaggaagagattccataaatgtcataaaaggttcataatattgtgaaattgaatgaatctcttgaacctgtattggactgatacca |
25727637 |
T |
|
| Q |
365 |
caagcagccaagtcaatagttgtaacattatgaccagctaatttaagcatagttgcaaccttataccaacacca |
438 |
Q |
| |
|
||| ||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||| |
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|
| T |
25727636 |
caaccagccaattcaatagttgtaacattatgaccagctgatttcagcatagttgcaaccttataccaagacca |
25727563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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