View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9173_high_6 (Length: 425)
Name: NF9173_high_6
Description: NF9173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9173_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 21 - 414
Target Start/End: Complemental strand, 302257 - 301863
Alignment:
| Q |
21 |
acacaagaaagacactgcccttggaatcaatcaaaattttataaaggatgcaactatttcaaaaagaaaatttgtaaaaagacat--taaaatttgaaca |
118 |
Q |
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| T |
302257 |
acacaagaaagatactgcc-ttggaatcaataaattttttataaaggatgcaactatttcaaaaagaaaatttgtaaaaagacatattaaaatttgaaca |
302159 |
T |
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| Q |
119 |
aggatttgcttaagctggaagatcagtctattgtaaaatgacaaatatgcacaccagaatatggatacaatatttttcacatgtctcgatcaaatgcctg |
218 |
Q |
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| T |
302158 |
aggatttgctgaagctggaagatcagtctattgtaaaatgacaaatattcacaccagaatatggatacaatatttttcacatgtctcgatcaaatgcctg |
302059 |
T |
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| Q |
219 |
cgattaggtaaaaatattaaaaataacagttcggctcatgtttctgcctaaaagaatgagaaatgagataacagttaaccgtataaaaacatacataaga |
318 |
Q |
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| T |
302058 |
cgattaggtaaaaatattaaaaataacagttcggctcatgtttctgcctaaaagaatgagaaatgagataacagttaaccgtataaaaacatacataaga |
301959 |
T |
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| Q |
319 |
gaatagcttcccaagaaaactatatctcaccagaatagaattaaacaaagacaacattgcggtagaaattgacagaactaaatagccaacaccaaa |
414 |
Q |
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| T |
301958 |
gaatagcttccaaagaaaactatatctcaccagaatagaattaaacaaagacaacattgcggtagaaattgacagaactaaataaccaacaccaaa |
301863 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 410
Target Start/End: Original strand, 27464479 - 27464527
Alignment:
| Q |
363 |
acaaagacaacattgcggtagaaattg-acagaactaaatagccaacac |
410 |
Q |
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| T |
27464479 |
acaaagacagcattgcggtagaagttgtacagaactaaataaccaacac |
27464527 |
T |
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