View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9173_high_9 (Length: 369)
Name: NF9173_high_9
Description: NF9173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9173_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 38074477 - 38074826
Alignment:
| Q |
1 |
aaaattaaggcaacatgttcctcgttagaaccttctgagttagttttgtgaaaagccttaacgacggagaaaaactactaatagatttgtcattggtgtg |
100 |
Q |
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| T |
38074477 |
aaaataaaggcaacatgttcctcgttagaaccttctgagttagttttgtggaaagccataacgacggagaaaaactactaatagatttgtcattggtgtg |
38074576 |
T |
|
| Q |
101 |
cttaactggattttcgacagaagggttgatagtttcgtcgtcatatctaagacctcaaacaaccaatcatgccatattgaaaatgaaaattactagtagt |
200 |
Q |
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| T |
38074577 |
cctaactggattttcgacagaagggttgatagtttcg-cgtcatatctaagacctctaacaaccaatcatgccatattgaaaatgaaaattactagtagt |
38074675 |
T |
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| Q |
201 |
gctattccaaaagaataaaaaagttataattaaaggcttttcgatttttcttgtcaaaaggggatatgatagaatgcatatttttcttgaaaacaacggt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38074676 |
gctattccaaaagaataaaaaagttataattaaaggcttttcgatttttcttgtcaaaaggggatctgatagaatgcatatttttcttgaaaacaacggt |
38074775 |
T |
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| Q |
301 |
ataattctttctggagtcctaaatacaagagacagttgaatcaacaaaagt |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38074776 |
ataattctttctggagtcctaaatacaagagacagttgaatcaacaaaagt |
38074826 |
T |
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