View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9173_low_11 (Length: 532)

Name: NF9173_low_11
Description: NF9173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9173_low_11
NF9173_low_11
[»] chr4 (5 HSPs)
chr4 (68-261)||(21347170-21347363)
chr4 (362-514)||(21346838-21346990)
chr4 (273-423)||(21346983-21347133)
chr4 (4-70)||(21347432-21347498)
chr4 (216-263)||(10983923-10983970)
[»] chr3 (3 HSPs)
chr3 (15-70)||(50725530-50725585)
chr3 (15-70)||(50787264-50787319)
chr3 (227-263)||(20588497-20588533)
[»] chr8 (1 HSPs)
chr8 (15-67)||(4037481-4037533)
[»] chr2 (1 HSPs)
chr2 (210-262)||(36038012-36038064)
[»] chr7 (2 HSPs)
chr7 (275-320)||(38372967-38373012)
chr7 (227-263)||(23636635-23636671)


Alignment Details
Target: chr4 (Bit Score: 157; Significance: 3e-83; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 68 - 261
Target Start/End: Complemental strand, 21347363 - 21347170
Alignment:
Q  68 gcaggctagatgccaccctcataacatgtttccattgctcataaaatgagggtccagtgacaaaatataaggattgttggattctaagcnnnnnnnttaa 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||       ||||    
T  21347363 gcaggctagatgccaccctcataacatgtttccattgctcataaaatgagggtccagtgaaaaaatataaggattgttggattctaagcaaaaaaattaa 21347264  T
Q  168 atctataaacaagtcattttagaacaagtgtaaaaatctttcagtgttaatttcaatgagttagtccatatagagctttgctctaactttaaat 261  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  21347263 atctataaacaagtcattttagaacaagtgtaaaaatcttccagtgttaatttcgatgagttagttcatatagagctttgctctaactttaaat 21347170  T

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Target: chr4; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 362 - 514
Target Start/End: Complemental strand, 21346990 - 21346838
Alignment:
Q  362 ttgataaaggcaaaatatgtaaagaatgtcaagaaaaataaagacaagaatgtaatgataaactcaacttgaataaccaacttcgaataaggaaaagata 461  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21346990 ttgataaaggcaaaaaatgtaaagaatgtcaagaaaaataaagacaagaatgtaatgataaactcaacttgaataaccaacttcgaataaggaaaagata 21346891  T
Q  462 aatagaaaaaactataaggtatgtgtgtgcataatctgaattggagtaaatga 514  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21346890 aatagaaaaaactataaggtatgtgtgtgcataatctgaattggagtaaatga 21346838  T

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Target: chr4; HSP #3
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 273 - 423
Target Start/End: Complemental strand, 21347133 - 21346983
Alignment:
Q  273 aaattagtccgtccttatgtcagatactgaattttcaaaacaaaaaatgtgtaaccggatacagagtaactcgtaggagtgcagttaatttgataaaggc 372  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21347133 aaattagtccgtccttatgtcatatactgaattttcaaaacaaaaaatgtgtaaccggatacagagtaactcgtaggagtgcagttaatttgataaaggc 21347034  T
Q  373 aaaatatgtaaagaatgtcaagaaaaataaagacaagaatgtaatgataaa 423  Q
    |||| |||||| ||||||||||||||||||||||||||||||| |||||||    
T  21347033 aaaaaatgtaaggaatgtcaagaaaaataaagacaagaatgtattgataaa 21346983  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 21347498 - 21347432
Alignment:
Q  4 tggtgggtagataatactattaaataaaatagttggggtgaatgttacaatctcacataaacctgca 70  Q
    ||||||||  |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  21347498 tggtgggtctataataatattaaataaaatagttggggtgaatgtcacaatctcacataaacctgca 21347432  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 263
Target Start/End: Original strand, 10983923 - 10983970
Alignment:
Q  216 aatttcaatgagttagtccatatagagctttgctctaactttaaatgg 263  Q
    |||||||| | |||||||||||||| ||||||||||| ||||||||||    
T  10983923 aatttcaaggtgttagtccatatagtgctttgctctagctttaaatgg 10983970  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 50725530 - 50725585
Alignment:
Q  15 taatactattaaataaaatagttggggtgaatgttacaatctcacataaacctgca 70  Q
    ||||||||||||||||||||||| |||||||||| | ||||||||||||| |||||    
T  50725530 taatactattaaataaaatagttagggtgaatgtcataatctcacataaatctgca 50725585  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 50787319 - 50787264
Alignment:
Q  15 taatactattaaataaaatagttggggtgaatgttacaatctcacataaacctgca 70  Q
    ||||||||||||||||||||||| |||||||||| | ||||||||||||| |||||    
T  50787319 taatactattaaataaaatagttagggtgaatgtcataatctcacataaatctgca 50787264  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 263
Target Start/End: Complemental strand, 20588533 - 20588497
Alignment:
Q  227 gttagtccatatagagctttgctctaactttaaatgg 263  Q
    ||||||||||| | |||||||||||||||||||||||    
T  20588533 gttagtccataaatagctttgctctaactttaaatgg 20588497  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 4037481 - 4037533
Alignment:
Q  15 taatactattaaataaaatagttggggtgaatgttacaatctcacataaacct 67  Q
    ||||| |||||||||||||| ||||||| ||||| | ||||||||||||||||    
T  4037481 taataatattaaataaaataattggggtaaatgtcataatctcacataaacct 4037533  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 36038064 - 36038012
Alignment:
Q  210 agtgttaatttcaatgagttagtccatatagagctttgctctaactttaaatg 262  Q
    ||||| |||||  ||| ||||||||||||||||||||||||| ||||||||||    
T  36038064 agtgtcaattttgatgggttagtccatatagagctttgctctgactttaaatg 36038012  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 320
Target Start/End: Complemental strand, 38373012 - 38372967
Alignment:
Q  275 attagtccgtccttatgtcagatactgaattttcaaaacaaaaaat 320  Q
    ||||||| ||||||  |||||||||||| |||||||||||||||||    
T  38373012 attagtcggtccttgggtcagatactgagttttcaaaacaaaaaat 38372967  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 263
Target Start/End: Complemental strand, 23636671 - 23636635
Alignment:
Q  227 gttagtccatatagagctttgctctaactttaaatgg 263  Q
    |||||||||||||||||||||||||  ||||||||||    
T  23636671 gttagtccatatagagctttgctctggctttaaatgg 23636635  T

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