View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9173_low_16 (Length: 437)
Name: NF9173_low_16
Description: NF9173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9173_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 17 - 430
Target Start/End: Complemental strand, 30916537 - 30916126
Alignment:
| Q |
17 |
acattatatgtgttgttttttcaaggatacttttgaattattgggtaagttccatgtttcatatgttatgttggtcggatttatggattgttgcatcatt |
116 |
Q |
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| T |
30916537 |
acattatatgtgttgttttttcaaggatacttttgaattattgggtaagttccatgtttcatatgttatgttggtcatttttatggattgttgcatcatt |
30916438 |
T |
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| Q |
117 |
tcgtgacttgtaggttttgtatgttgatatctttgttgtaaaaggaggatttggagggacattcaaataattcattattcatgtttcaccannnnnnnnn |
216 |
Q |
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| T |
30916437 |
tcgtgacttgtaggttttgtatgttgatatctttgttgtaaaaggaggatttggagggacattcaaataattcattattcatatttcacca-tttttttt |
30916339 |
T |
|
| Q |
217 |
ccttcattttaccttcaagttcatctatgcacttcgaagctttttcaataacctaagtcgatgttttttcattgttctcaaggttcaagctttttgtcgt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30916338 |
ccttcattttaccttcaagttcatctatgcacttcgaagctttttcaataacctgagtcgatgttttttcattgttctcaagtttcaagctttttgtcgt |
30916239 |
T |
|
| Q |
317 |
cgtaacctcattcctttgttggttaatacatgcttgatttcattttcnnnnnnngctttattacactttccaatttataaatgtttagaaaaaggaattt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
30916238 |
cgtaacctcattcctttgttggttaatacatgcttgctttcattttc-tattttgctttattacaccttccaatttataaatgtttagaaaaagggattt |
30916140 |
T |
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| Q |
417 |
ccagaatggtggaa |
430 |
Q |
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| T |
30916139 |
ctacagtggtggaa |
30916126 |
T |
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