View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9173_low_2 (Length: 666)
Name: NF9173_low_2
Description: NF9173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9173_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 569; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 35 - 648
Target Start/End: Original strand, 34990624 - 34991247
Alignment:
| Q |
35 |
cacatttcctaaatatataattaatccagcaacaaattttctactgtgccacaagtccatacacatacttatgagtcatgaccaagtaatgctatgtttg |
134 |
Q |
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| T |
34990624 |
cacatttcctaaatatataattaatccagcaacaaattttctactgtgccacaagtccatacacatacttatgagtcatgaccaagtaatgctatgtttg |
34990723 |
T |
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| Q |
135 |
gatacacggtgtcttagtagatctagcatcctatggactaagttaatcataatttttcatgaagctacaaattaaagcttctgagaaccacatagtgt-- |
232 |
Q |
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| T |
34990724 |
gatacacggtgtcttagtagatctaacatcctatggactaagttaatcataatttttcatgaagctacaaattaaaggttctgagaaccacatagtgtcg |
34990823 |
T |
|
| Q |
233 |
--------ttgttaaaatccaaatattggctaaataaagtcaagacatgagaattttaataaataaaaaggtggtgttgtgaaaaaacctaacttgttac |
324 |
Q |
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| T |
34990824 |
ccacaattttgttaaaatccaaatattggctaaataaagtcaagacatgagaattttaataaataaaaaggtggtgttgtgaaaaaacctaacttgttac |
34990923 |
T |
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| Q |
325 |
cattaaaatcattgtgctcaaaagacattaaaagagtacctgagttcaaagtatgttcttgttgcaaattgtgtttaactccttgacttagtccagtatc |
424 |
Q |
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| T |
34990924 |
cattaaaatcattgtgctcaaaagacattaaaagagtacctgagttcaaagtatgttcttgttgcaaattgtgtttaactccttgacttagtccagtatc |
34991023 |
T |
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| Q |
425 |
cggaaaatcatcaacagcatctgaataaacctcactttctgatctactaaatttcctttcaattccatcattgtttgaacctaactcaaccaaacctaaa |
524 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34991024 |
cggaaaatcatcaacagcatctgaataaacctcactttctgatctactaaatttcctttcaattccaccattgtttgaacctaactcaaccaaacctaaa |
34991123 |
T |
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| Q |
525 |
aaatatcaacacattatttagcaaatcgtctattttggaatgttaaagtaaacaaagcatatcttaattgtaatttcctattatttctcaacaacgatgt |
624 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34991124 |
aaatatcaacacattatttagcaaatcgtctattttggaatgttaaattaaacaaagcatatcttaattgtaatttcctattatttctcaacaacaatgt |
34991223 |
T |
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| Q |
625 |
tgcatattgtaactgtaaacatac |
648 |
Q |
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| T |
34991224 |
tgcatattgtaactgtaaacatac |
34991247 |
T |
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