View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9173_low_21 (Length: 391)

Name: NF9173_low_21
Description: NF9173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9173_low_21
NF9173_low_21
[»] chr6 (8 HSPs)
chr6 (163-389)||(23503954-23504180)
chr6 (5-125)||(23503796-23503916)
chr6 (23-104)||(10303157-10303238)
chr6 (23-108)||(24639198-24639283)
chr6 (24-111)||(31454029-31454116)
chr6 (67-108)||(18031727-18031768)
chr6 (67-108)||(34520372-34520413)
chr6 (23-63)||(22732627-22732667)
[»] chr5 (4 HSPs)
chr5 (23-108)||(14868201-14868286)
chr5 (25-108)||(6612398-6612481)
chr5 (65-95)||(29994682-29994712)
chr5 (67-108)||(8248463-8248504)
[»] chr1 (5 HSPs)
chr1 (23-108)||(3926582-3926665)
chr1 (169-227)||(9485010-9485068)
chr1 (25-108)||(9484869-9484952)
chr1 (35-90)||(52626540-52626595)
chr1 (67-108)||(10252286-10252327)
[»] chr4 (4 HSPs)
chr4 (23-108)||(19233455-19233540)
chr4 (35-95)||(9831418-9831478)
chr4 (35-95)||(13137114-13137174)
chr4 (66-114)||(29521675-29521723)
[»] chr3 (5 HSPs)
chr3 (66-115)||(35503992-35504041)
chr3 (23-104)||(7583162-7583243)
chr3 (67-108)||(44774519-44774560)
chr3 (36-108)||(39770946-39771018)
chr3 (67-110)||(19596282-19596325)
[»] chr2 (4 HSPs)
chr2 (66-95)||(9840831-9840860)
chr2 (33-114)||(13880757-13880838)
chr2 (33-114)||(14020882-14020963)
chr2 (35-107)||(726282-726354)


Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 163 - 389
Target Start/End: Original strand, 23503954 - 23504180
Alignment:
Q  163 ctgtcctgtaaatattttcttgactcttatgttcttccttggcacacctggtgttaggaaggacaattaggaatttttcttgtggcagtttggcttattt 262  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23503954 ctgtcctgtaaatattttattgactcttatgttcttccttggcacacctggtgttaggaaggacaattaggaatttttcttgtggcagtttggcttattt 23504053  T
Q  263 atgattgaaacatcaaacttaatcattagtgtcagcctcatatggatcttctttgcaagttttggatataccttcttttccctcttggtttgcttggttt 362  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23504054 atgattgaaacatcaaacttaatcaatagtgtcagtctcatatggatcttctttgcaagttttggatataccttcttttccctcttggtttgcttggttt 23504153  T
Q  363 gttgtcctctctgctttgctgtgattt 389  Q
    |||||||||||||||||||||||||||    
T  23504154 gttgtcctctctgctttgctgtgattt 23504180  T

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Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 5 - 125
Target Start/End: Original strand, 23503796 - 23503916
Alignment:
Q  5 ggtagataatactaggtgactttccttctcgtggttgaaggctaaattcgttaattttctcttcaattatcatggttggtggcttaatccgctcgcaatg 104  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  23503796 ggtagataatattaggtgactttccttctcgtggttgaaggctaaattcgttaattttcttttcaattatcatggttggtggcttagtccgctcgcaatg 23503895  T
Q  105 ttggacattggtttatggtta 125  Q
    ||||||||||||| |||||||    
T  23503896 ttggacattggttaatggtta 23503916  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 10303238 - 10303157
Alignment:
Q  23 actttccttctcgtggttgaaggctaaattcgttaattttctcttcaattatcatggttggtggcttaatccgctcgcaatg 104  Q
    ||||||||||||||||||||| || ||||| ||| |||||| ||||||||||||||| |||||||||| ||| |||||||||    
T  10303238 actttccttctcgtggttgaaagcaaaatttgttcattttcgcttcaattatcatggctggtggcttagtcctctcgcaatg 10303157  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 24639198 - 24639283
Alignment:
Q  23 actttccttctcgtggttgaaggctaaattcgttaattttctcttcaattatcatggttggtggcttaatccgctcgcaatgttgg 108  Q
    ||||||||||||||||||||| |  ||||| ||| | |||  |||||||||| |||| |||||||||| ||| || ||||||||||    
T  24639198 actttccttctcgtggttgaaagagaaatttgttcagttttccttcaattatgatggctggtggcttagtccccttgcaatgttgg 24639283  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 111
Target Start/End: Complemental strand, 31454116 - 31454029
Alignment:
Q  24 ctttccttctcgtggttgaaggctaaattcgttaattttctcttc-aattatcatggttggtggcttaatccgctcgcaatgttggaca 111  Q
    |||||||| |||||||| ||||  ||||| |||  |||||||||  |||||||||||||||||||||| ||| ||||| ||||||||||    
T  31454116 ctttccttttcgtggttaaaggagaaatttgttc-ttttctcttttaattatcatggttggtggcttagtcccctcgctatgttggaca 31454029  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 18031768 - 18031727
Alignment:
Q  67 tcaattatcatggttggtggcttaatccgctcgcaatgttgg 108  Q
    |||||||||||||||||||||||| ||| || ||||||||||    
T  18031768 tcaattatcatggttggtggcttagtcccctagcaatgttgg 18031727  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 34520413 - 34520372
Alignment:
Q  67 tcaattatcatggttggtggcttaatccgctcgcaatgttgg 108  Q
    ||||||| |||||||||||||||| ||| |||||||||||||    
T  34520413 tcaattaccatggttggtggcttagtcctctcgcaatgttgg 34520372  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 22732667 - 22732627
Alignment:
Q  23 actttccttctcgtggttgaaggctaaattcgttaattttc 63  Q
    |||||||||||||||||||||||| ||||| ||| ||||||    
T  22732667 actttccttctcgtggttgaaggcgaaatttgtttattttc 22732627  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 23 - 108
Target Start/End: Complemental strand, 14868286 - 14868201
Alignment:
Q  23 actttccttctcgtggttgaaggctaaattcgttaattttctcttcaattatcatggttggtggcttaatccgctcgcaatgttgg 108  Q
    ||||||||||| |||||||||||| ||||| ||| |||||  ||||||||||||||| |||||||||| ||| || ||| ||||||    
T  14868286 actttccttcttgtggttgaaggcaaaatttgttcatttttccttcaattatcatggctggtggcttagtccccttgcattgttgg 14868201  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 6612398 - 6612481
Alignment:
Q  25 tttccttctcgtggttgaaggctaaattcgttaattttctcttcaattatcatggttggtggcttaatccgctcgcaatgttgg 108  Q
    |||||||||||||||||||||  ||||| ||| | |||  ||||||||| ||||| |||||||||| ||| |||||||||||||    
T  6612398 tttccttctcgtggttgaaggagaaatttgttcagttttccttcaattaccatggatggtggcttagtcccctcgcaatgttgg 6612481  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 95
Target Start/End: Original strand, 29994682 - 29994712
Alignment:
Q  65 cttcaattatcatggttggtggcttaatccg 95  Q
    |||||||||||||||||||||||||||||||    
T  29994682 cttcaattatcatggttggtggcttaatccg 29994712  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 8248504 - 8248463
Alignment:
Q  67 tcaattatcatggttggtggcttaatccgctcgcaatgttgg 108  Q
    ||||||| |||||||||||||||| ||| |||||||||||||    
T  8248504 tcaattaccatggttggtggcttagtcccctcgcaatgttgg 8248463  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 108
Target Start/End: Complemental strand, 3926665 - 3926582
Alignment:
Q  23 actttccttctcgtggttgaaggctaaattcgttaattttctcttcaattatcatggttggtggcttaatccgctcgcaatgttgg 108  Q
    |||||||||||||||||||||||  || ||  | ||||||||||  |||||||||||||||||||||| ||| || ||||||||||    
T  3926665 actttccttctcgtggttgaaggaaaattt--tcaattttctctcaaattatcatggttggtggcttagtcccctagcaatgttgg 3926582  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 9485010 - 9485068
Alignment:
Q  169 tgtaaatattttcttgactcttatgttcttccttggcacacctggtgttaggaaggaca 227  Q
    |||| ||||| | |||||||||||||||||||||||||||||| ||| |||||||||||    
T  9485010 tgtacatattgttttgactcttatgttcttccttggcacaccttgtgctaggaaggaca 9485068  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 9484869 - 9484952
Alignment:
Q  25 tttccttctcgtggttgaaggctaaattcgttaattttctcttcaattatcatggttggtggcttaatccgctcgcaatgttgg 108  Q
    ||||||||| |||||||||||| ||||| |||  | ||| |||||||||||||||||||||| ||| || | || |||||||||    
T  9484869 tttccttcttgtggttgaaggcgaaatttgtttctcttcccttcaattatcatggttggtggtttagtcagttcacaatgttgg 9484952  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 52626540 - 52626595
Alignment:
Q  35 gtggttgaaggctaaattcgttaattttctcttcaattatcatggttggtggctta 90  Q
    ||||||| |||| |||||||||  | ||| ||||||||||||||||||||||||||    
T  52626540 gtggttggaggcaaaattcgtttctcttcccttcaattatcatggttggtggctta 52626595  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 108
Target Start/End: Original strand, 10252286 - 10252327
Alignment:
Q  67 tcaattatcatggttggtggcttaatccgctcgcaatgttgg 108  Q
    ||||||| |||||||||||||||| ||| |||||||||||||    
T  10252286 tcaattaccatggttggtggcttagtcccctcgcaatgttgg 10252327  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 19233455 - 19233540
Alignment:
Q  23 actttccttctcgtggttgaaggctaaattcgttaattttctcttcaattatcatggttggtggcttaatccgctcgcaatgttgg 108  Q
    |||||||||||||||||||||||  ||||| ||| ||||||  |||||||| ||||| |||||||||| ||| ||| || ||||||    
T  19233455 actttccttctcgtggttgaaggtaaaatttgttcattttccattcaattaccatggatggtggcttagtcccctcacagtgttgg 19233540  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 9831418 - 9831478
Alignment:
Q  35 gtggttgaaggctaaattcgttaattttctcttcaattatcatggttggtggcttaatccg 95  Q
    |||||||||||| ||||||||||   ||| ||||||||||||||| |||||||||| ||||    
T  9831418 gtggttgaaggcgaaattcgttacacttcccttcaattatcatggctggtggcttagtccg 9831478  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 13137114 - 13137174
Alignment:
Q  35 gtggttgaaggctaaattcgttaattttctcttcaattatcatggttggtggcttaatccg 95  Q
    |||||||||||  ||||| | || | || ||||||||||||||||||||||||||| ||||    
T  13137114 gtggttgaaggtgaaatttgctactcttttcttcaattatcatggttggtggcttagtccg 13137174  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 29521723 - 29521675
Alignment:
Q  66 ttcaattatcatggttggtggcttaatccgctcgcaatgttggacattg 114  Q
    ||||||||||||| ||||||| |||||||| || ||||||||| |||||    
T  29521723 ttcaattatcatgattggtggtttaatccgttcacaatgttgggcattg 29521675  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 35503992 - 35504041
Alignment:
Q  66 ttcaattatcatggttggtggcttaatccgctcgcaatgttggacattgg 115  Q
    |||||||||||||||||||||||||||||||| | |||||||| ||||||    
T  35503992 ttcaattatcatggttggtggcttaatccgcttgtaatgttgggcattgg 35504041  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 7583162 - 7583243
Alignment:
Q  23 actttccttctcgtggttgaaggctaaattcgttaattt-tctcttcaattatcatggttggtggcttaatccgctcgcaatg 104  Q
    |||||||||||| |||||||||   ||||| ||| |||| ||||| |||||| |||||||||||||||||||| |||||||||    
T  7583162 actttccttctcctggttgaagatgaaatttgttcatttatctct-caattaccatggttggtggcttaatcctctcgcaatg 7583243  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 44774560 - 44774519
Alignment:
Q  67 tcaattatcatggttggtggcttaatccgctcgcaatgttgg 108  Q
    |||||||||||||||||||||||| ||| |||||||||||||    
T  44774560 tcaattatcatggttggtggcttagtcccctcgcaatgttgg 44774519  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 39770946 - 39771018
Alignment:
Q  36 tggttgaaggctaaattcgttaattttctcttcaattatcatggttggtggcttaatccgctcgcaatgttgg 108  Q
    ||||||||||| ||||| ||| |||||| |||||||| | ||| ||||||||||| |||| | ||||||||||    
T  39770946 tggttgaaggcgaaatttgttgattttcccttcaattttgatgattggtggcttagtccgtttgcaatgttgg 39771018  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 19596282 - 19596325
Alignment:
Q  67 tcaattatcatggttggtggcttaatccgctcgcaatgttggac 110  Q
    |||||||||||||||||||||||| ||| || ||||||||||||    
T  19596282 tcaattatcatggttggtggcttagtcccctagcaatgttggac 19596325  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 95
Target Start/End: Original strand, 9840831 - 9840860
Alignment:
Q  66 ttcaattatcatggttggtggcttaatccg 95  Q
    ||||||||||||||||||||||||||||||    
T  9840831 ttcaattatcatggttggtggcttaatccg 9840860  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 114
Target Start/End: Original strand, 13880757 - 13880838
Alignment:
Q  33 tcgtggttgaaggctaaattcgttaattttctcttcaattatcatggttggtggcttaatccgctcgcaatgttggacattg 114  Q
    |||||||||||||| ||||| ||| |||||| || ||||| | ||| ||||||||||| |||| | | |||||||| |||||    
T  13880757 tcgtggttgaaggcgaaatttgttgattttccctccaatttttatgattggtggcttagtccgattgtaatgttgggcattg 13880838  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 114
Target Start/End: Original strand, 14020882 - 14020963
Alignment:
Q  33 tcgtggttgaaggctaaattcgttaattttctcttcaattatcatggttggtggcttaatccgctcgcaatgttggacattg 114  Q
    |||||||||||||| ||||| ||| |||||| || ||||| | ||| ||||||||||| |||| | | |||||||| |||||    
T  14020882 tcgtggttgaaggcgaaatttgttgattttccctccaatttttatgattggtggcttagtccgattgtaatgttgggcattg 14020963  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 726282 - 726354
Alignment:
Q  35 gtggttgaaggctaaattcgttaattttctcttcaattatcatggttggtggcttaatccgctcgcaatgttg 107  Q
    |||||||||||| ||| | ||| ||| ||  ||||||||| ||||||||| | |||||||||| |||||||||    
T  726282 gtggttgaaggcgaaaattgttgattgtcctttcaattataatggttggtagtttaatccgcttgcaatgttg 726354  T

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