View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9173_low_25 (Length: 350)
Name: NF9173_low_25
Description: NF9173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9173_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 344
Target Start/End: Original strand, 41074171 - 41074495
Alignment:
| Q |
18 |
cattggtgacattgagagttgtaatgtcccgatatttgataggaagagtgatattgagtgtgatgtcatcaaattcatttattttctcacattattttac |
117 |
Q |
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| T |
41074171 |
cattggtgacattgagagttgtaatgtcccgatatttgataggaagagtgatattgagtgtgatgtcatcaaattcatttattttctcacattattttac |
41074270 |
T |
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| Q |
118 |
ttgtgtcgacatgtcgttttttagtggcgttttttggtgtacatgtttgtgtccctaggtcatatgtttaaaaggttatcatagcttgctttggatacac |
217 |
Q |
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| T |
41074271 |
ttgtgtcgacatgtcgttttttagtggcgttttttggtgta--tgtttgtgtccctaggtcatatgtttaaaagtttatcataacttgctttggatacac |
41074368 |
T |
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| Q |
218 |
ataaaacatcattaagatttaagagtgaaataagtagaattgtgagagatttaattttttctgtcacagatttactattacagtgtcatcccctcttgca |
317 |
Q |
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| T |
41074369 |
ataaaacatcattaagatttaagagtgaaataagtagaattgtgagagatttaattttttctgtcacagatttactattacagtgtcatcccctcttgca |
41074468 |
T |
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| Q |
318 |
tatagagttggccctgagaattatcta |
344 |
Q |
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| T |
41074469 |
tatagagttggccctgagaattgtcta |
41074495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 339
Target Start/End: Complemental strand, 35053615 - 35053565
Alignment:
| Q |
289 |
ttactattacagtgtcatcccctcttgcatatagagttggccctgagaatt |
339 |
Q |
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| T |
35053615 |
ttactattacagtgtcatcctctcttgcatacaaagttggccctgggaatt |
35053565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 278
Target Start/End: Original strand, 41074094 - 41074136
Alignment:
| Q |
236 |
ttaagagtgaaataagtagaattgtgagagatttaattttttc |
278 |
Q |
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| T |
41074094 |
ttaagagtgaaataagtagattagtgagagatttaattttttc |
41074136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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