View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9173_low_27 (Length: 349)
Name: NF9173_low_27
Description: NF9173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9173_low_27 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 12 - 349
Target Start/End: Complemental strand, 31004014 - 31003677
Alignment:
| Q |
12 |
attatactccctcaatatctttctataagtcaactttaataaaaacccannnnnnnaaggatttaataaaactgatttgtagggtatgagttagaaccaa |
111 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31004014 |
attatactccctcgatatctttctataagtcaactttaataaaaacccatttttttaaggatttaataaaactgatttgtagggtatgagttagaaccaa |
31003915 |
T |
|
| Q |
112 |
tccaaattttaaattggtaaccgagtttatctatgatttatttgtctctattatattacttttatcagaccattaaggtcacacactagatgagcattat |
211 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
31003914 |
tccaaattttaaattggtaatcgagtttatctatgatttatttgtctctattatattacttttatcagaccattagggtcgcacactagatgagcattat |
31003815 |
T |
|
| Q |
212 |
tcattagcgcacgagggaactgtgttgaagagttttgttgaattttgacgattatcacacgtctcagactataaaactctagtgttcacgcacatgactc |
311 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31003814 |
tcattagcacacgagggaactgtgttgaagagttttgttgaattttgacgattatcacacgtctcagactataaaactctagtgttcacgcacatgactc |
31003715 |
T |
|
| Q |
312 |
gtttgtggatcgtgattggtggtacatgaagagttcgc |
349 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31003714 |
gtttgtggatcatgattggtggtacatgaagagttcgc |
31003677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University