View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9173_low_29 (Length: 277)
Name: NF9173_low_29
Description: NF9173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9173_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 22 - 261
Target Start/End: Complemental strand, 54892935 - 54892696
Alignment:
| Q |
22 |
attttgtaaaagtaagtttatgattcaagattaaaatgagacgtaattgatagatggagaaatgaaatttgatcttacaatgttggattttgcagcagag |
121 |
Q |
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| T |
54892935 |
attttgtaaaagtaagtttatgattcaagattaaaatgagacgtaattgatagatggagaaatgaaatttgatcttacaatgttggattttgcagcagag |
54892836 |
T |
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| Q |
122 |
tccatctgattaaccaaggagcatcaaagccatgaaagttactccagtcttggagctgtttcatcgagaagtttaactagaagcttggatttatcttaaa |
221 |
Q |
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| T |
54892835 |
tccatctgattaaccaaggagcatcaaagccatgaaagttactccagtcttggagctgtttcatcgagaagtttaactagaagcttggatttatcttaaa |
54892736 |
T |
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| Q |
222 |
attttatttcttgcatcccaagactatttgaactagaatt |
261 |
Q |
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| T |
54892735 |
attttatttcttgcatcccaagactatttgaactagaatt |
54892696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 54887324 - 54887237
Alignment:
| Q |
22 |
attttgtaaaagtaagtttatgattcaagattaaaatgagacgtaattgatagatggagaaatgaaatttgatcttacaatgttggat |
109 |
Q |
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| T |
54887324 |
attttgtgaaattatgtttatgattcaggattaaaatgaaacgtagttgatagatggagaaatgcaatttgatcttaccatgttggat |
54887237 |
T |
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