View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9173_low_4 (Length: 665)

Name: NF9173_low_4
Description: NF9173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9173_low_4
NF9173_low_4
[»] chr8 (13 HSPs)
chr8 (413-647)||(5688849-5689083)
chr8 (415-559)||(18141421-18141565)
chr8 (415-562)||(40320686-40320833)
chr8 (412-558)||(8149937-8150082)
chr8 (465-581)||(6127700-6127817)
chr8 (453-559)||(9765388-9765493)
chr8 (453-548)||(26402720-26402816)
chr8 (413-472)||(30291216-30291275)
chr8 (583-628)||(40320833-40320878)
chr8 (614-647)||(18141600-18141633)
chr8 (40-105)||(29858059-29858124)
chr8 (111-143)||(968444-968476)
chr8 (37-105)||(28783058-28783126)
[»] chr1 (19 HSPs)
chr1 (412-647)||(28265923-28266158)
chr1 (413-562)||(776847-776994)
chr1 (413-541)||(50167608-50167737)
chr1 (413-541)||(50169630-50169759)
chr1 (524-647)||(45644711-45644834)
chr1 (412-576)||(47255971-47256134)
chr1 (471-576)||(40816348-40816452)
chr1 (566-647)||(50167544-50167625)
chr1 (413-488)||(8871591-8871666)
chr1 (413-487)||(45644824-45644898)
chr1 (461-581)||(47703437-47703557)
chr1 (566-647)||(50169566-50169647)
chr1 (583-641)||(776994-777052)
chr1 (39-143)||(1094525-1094639)
chr1 (38-113)||(25297771-25297846)
chr1 (38-109)||(40257398-40257469)
chr1 (72-113)||(17439950-17439991)
chr1 (110-143)||(21547442-21547475)
chr1 (412-448)||(43342772-43342808)
[»] chr6 (10 HSPs)
chr6 (413-647)||(3039270-3039505)
chr6 (12-252)||(13441023-13441271)
chr6 (453-545)||(21800913-21801005)
chr6 (38-112)||(31622994-31623068)
chr6 (38-105)||(33549103-33549170)
chr6 (412-445)||(4045012-4045045)
chr6 (58-113)||(6776609-6776664)
chr6 (113-143)||(24641152-24641182)
chr6 (39-105)||(30127400-30127466)
chr6 (58-107)||(6758430-6758479)
[»] chr3 (15 HSPs)
chr3 (413-559)||(9666891-9667037)
chr3 (414-629)||(31314120-31314330)
chr3 (412-548)||(29196866-29197002)
chr3 (413-562)||(28073999-28074148)
chr3 (413-560)||(44700914-44701062)
chr3 (453-577)||(25796259-25796383)
chr3 (464-581)||(3715495-3715612)
chr3 (583-647)||(28074148-28074212)
chr3 (464-581)||(47650045-47650162)
chr3 (412-443)||(5372821-5372852)
chr3 (38-113)||(31520607-31520682)
chr3 (38-101)||(36720380-36720443)
chr3 (39-113)||(17108900-17108974)
chr3 (613-645)||(44700849-44700881)
chr3 (37-113)||(46518626-46518702)
[»] chr4 (11 HSPs)
chr4 (413-562)||(45687616-45687765)
chr4 (412-548)||(36463836-36463972)
chr4 (412-534)||(52467782-52467904)
chr4 (412-559)||(46147779-46147910)
chr4 (557-646)||(45687553-45687642)
chr4 (453-545)||(3793593-3793686)
chr4 (453-581)||(24334528-24334656)
chr4 (39-103)||(33619206-33619270)
chr4 (113-143)||(23491991-23492021)
chr4 (113-143)||(40283948-40283978)
chr4 (36-109)||(51250528-51250601)
[»] chr7 (11 HSPs)
chr7 (415-577)||(24526323-24526486)
chr7 (412-534)||(12098247-12098369)
chr7 (413-541)||(8152947-8153080)
chr7 (429-569)||(22269351-22269490)
chr7 (413-562)||(41317867-41318034)
chr7 (553-647)||(41317803-41317897)
chr7 (600-647)||(8153095-8153142)
chr7 (557-647)||(36146778-36146868)
chr7 (464-548)||(29160270-29160353)
chr7 (39-105)||(48771938-48772004)
chr7 (37-109)||(2446306-2446378)
[»] chr2 (14 HSPs)
chr2 (412-562)||(36773146-36773297)
chr2 (412-559)||(33162852-33162999)
chr2 (479-625)||(11066957-11067103)
chr2 (453-581)||(42269847-42269976)
chr2 (453-581)||(34681825-34681953)
chr2 (453-581)||(31056521-31056650)
chr2 (583-647)||(36773297-36773361)
chr2 (39-113)||(26545840-26545914)
chr2 (413-451)||(11066907-11066945)
chr2 (111-143)||(25637233-25637265)
chr2 (39-113)||(19016031-19016105)
chr2 (566-647)||(26352264-26352345)
chr2 (40-109)||(37755977-37756046)
chr2 (37-105)||(39714990-39715058)
[»] chr5 (7 HSPs)
chr5 (453-559)||(10282208-10282315)
chr5 (412-543)||(28277694-28277824)
chr5 (453-548)||(3881241-3881337)
chr5 (39-143)||(16773807-16773921)
chr5 (38-109)||(30883204-30883275)
chr5 (39-113)||(8278277-8278351)
chr5 (39-105)||(14495815-14495881)
[»] scaffold0477 (2 HSPs)
scaffold0477 (453-581)||(5447-5577)
scaffold0477 (607-647)||(5625-5665)
[»] scaffold0258 (1 HSPs)
scaffold0258 (39-143)||(15285-15399)
[»] scaffold0172 (1 HSPs)
scaffold0172 (37-113)||(32771-32847)
[»] scaffold0299 (1 HSPs)
scaffold0299 (58-105)||(11547-11594)
[»] scaffold0291 (1 HSPs)
scaffold0291 (39-105)||(2480-2546)


Alignment Details
Target: chr8 (Bit Score: 159; Significance: 2e-84; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 413 - 647
Target Start/End: Original strand, 5688849 - 5689083
Alignment:
Q  413 tgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgcc 512  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||| |||||||||||||||||||||||||| ||||| |    
T  5688849 tgttgaaatgtgtctcaaaattgatgttgaagtttggaaaaatcgtggcacgtttgcagggcaacgtggcacgattgaatggttcagttttttggttgtc 5688948  T
Q  513 actagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcaggaggaacgtgtcacgatgcaggggataagagcaagaaatatactgctaccaac 612  Q
    |||  ||||||||||||||||||||||||||||||| || |||||||||| |||||| |||| |||||| ||||||| |||| | | |||||||||||||    
T  5688949 actgaaaaaatcgtggcacgatccaggaggaacgtggcacgatgcaggagcaacgtggcacggtgcaggagataagatcaagtactgtactgctaccaac 5689048  T
Q  613 tccatcgtggcacgatgagctcgaaacgtggcacg 647  Q
    ||||||||||||||||| |||||||||||||||||    
T  5689049 tccatcgtggcacgatgggctcgaaacgtggcacg 5689083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 415 - 559
Target Start/End: Original strand, 18141421 - 18141565
Alignment:
Q  415 ttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgccac 514  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||| | ||||||||||| ||||||||||||||||||||||    
T  18141421 ttgaaatgtgtctcaaaattgatgttgaagtctggaacaatcgtggcacgtttgcagggcaacgtcgcacgattgaacggttcagtttttgggttgccac 18141520  T
Q  515 tagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcag 559  Q
    | |||||||  ||||||||||||||||||||||| || |||||||    
T  18141521 tggaaaaattatggcacgatccaggaggaacgtggcacgatgcag 18141565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 415 - 562
Target Start/End: Original strand, 40320686 - 40320833
Alignment:
Q  415 ttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgccac 514  Q
    ||||||||||||| |||||||| |||||||||||||| ||||||| ||  ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40320686 ttgaaatgtgtcttaaaattgaagttgaagtttggaaaaatcgtggcatgtttgcagggcaacgtggcacgattgaatggttcagtttttgggttgccac 40320785  T
Q  515 tagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcaggag 562  Q
    | ||||||||||||||| ||  |||||||||||| || ||||||||||    
T  40320786 tggaaaaatcgtggcacaatgtaggaggaacgtggcacgatgcaggag 40320833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 412 - 558
Target Start/End: Complemental strand, 8150082 - 8149937
Alignment:
Q  412 ttgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgc 511  Q
    |||||||||  || ||||||||||||| |||||| ||||| ||||||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||    
T  8150082 ttgttgaaaattgactcaaaattgatggtgaagtctggaa-aatcgtggcacgtttgcagggcaatgtggcacgattgaatggttcagtttttgggttgc 8149984  T
Q  512 cactagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgca 558  Q
    |||||||||| ||||||||||||| |||||||| ||| || ||||||    
T  8149983 cactagaaaattcgtggcacgatctaggaggaatgtgacacgatgca 8149937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 465 - 581
Target Start/End: Complemental strand, 6127817 - 6127700
Alignment:
Q  465 tttgcagggcaacatggcacgattgaatggttcagtttttgggtt-gccactagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcaggagg 563  Q
    ||||||||||||  ||||||||||| ||||||||| ||||||||| | | |||||||||| |||||||||||||  ||||||||| || |||| | ||||    
T  6127817 tttgcagggcaatgtggcacgattggatggttcagattttgggtttgtcgctagaaaaattgtggcacgatccaataggaacgtgacacgatggaagagg 6127718  T
Q  564 aacgtgtcacgatgcagg 581  Q
    |||||| |||||| ||||    
T  6127717 aacgtggcacgatccagg 6127700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 453 - 559
Target Start/End: Original strand, 9765388 - 9765493
Alignment:
Q  453 aatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgccactagaaaaatcgtggcacgatccaggaggaacgtgtcat 552  Q
    ||||||| ||| ||||||||||||| ||||||||||| ||||||||  ||| || ||| |||  |||||||| ||||||||||||||||||||||| ||     
T  9765388 aatcgtggcacgtttgcagggcaacgtggcacgattggatggttcatatttgggtttgtcacg-gaaaaatcatggcacgatccaggaggaacgtggcac 9765486  T
Q  553 gatgcag 559  Q
    |||||||    
T  9765487 gatgcag 9765493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 453 - 548
Target Start/End: Original strand, 26402720 - 26402816
Alignment:
Q  453 aatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgcca-ctagaaaaatcgtggcacgatccaggaggaacgtg 548  Q
    ||||||| ||| ||||||||||||| ||||||||||| ||||||||| |||||||||   | || ||||| |||||||||||| ||||| |||||||    
T  26402720 aatcgtggcacgtttgcagggcaacgtggcacgattggatggttcagattttgggtttatagctggaaaattcgtggcacgattcaggatgaacgtg 26402816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 413 - 472
Target Start/End: Original strand, 30291216 - 30291275
Alignment:
Q  413 tgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagg 472  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||  ||| ||||||||    
T  30291216 tgttgaaatgtgtctcaaaattgatgttgaagtctggaaaaatcgtcgcacgtttgcagg 30291275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 583 - 628
Target Start/End: Original strand, 40320833 - 40320878
Alignment:
Q  583 gataagagcaagaaatatactgctaccaactccatcgtggcacgat 628  Q
    |||||||||||| | | |||||||||||||||||||||||||||||    
T  40320833 gataagagcaagtattgtactgctaccaactccatcgtggcacgat 40320878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 614 - 647
Target Start/End: Original strand, 18141600 - 18141633
Alignment:
Q  614 ccatcgtggcacgatgagctcgaaacgtggcacg 647  Q
    |||||||||||||||| |||||||||||||||||    
T  18141600 ccatcgtggcacgatgggctcgaaacgtggcacg 18141633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 29858124 - 29858059
Alignment:
Q  40 acccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctca 105  Q
    |||||||||||||||   |||||||||||||  ||| | ||||| |||||||||| ||||||||||    
T  29858124 acccacttggattggcctggtggtattggcttgggaccagggagtgtgctcctcctcgaggtctca 29858059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 111 - 143
Target Start/End: Original strand, 968444 - 968476
Alignment:
Q  111 gatgccaatttaggtgggctaatttaacttctt 143  Q
    |||||||||||||||||||||||||| ||||||    
T  968444 gatgccaatttaggtgggctaatttagcttctt 968476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 28783058 - 28783126
Alignment:
Q  37 gaaacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctca 105  Q
    ||||||||||||| |||| | |||||||||||||   || ||||||| |||||||||| | ||||||||    
T  28783058 gaaacccacttgggttggcttggtggtattggcttgagacctgggagtgtgctcctcctcaaggtctca 28783126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 140; Significance: 5e-73; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 412 - 647
Target Start/End: Complemental strand, 28266158 - 28265923
Alignment:
Q  412 ttgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgc 511  Q
    |||||||||||||||||||||||||||| |||||||| || |||| || ||| ||||||||||||| ||||||||||||||||||||| |||||||||||    
T  28266158 ttgttgaaatgtgtctcaaaattgatgtggaagtttgaaaaaatcatggcacgtttgcagggcaacgtggcacgattgaatggttcagattttgggttgc 28266059  T
Q  512 cactagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcaggaggaacgtgtcacgatgcaggggataagagcaagaaatatactgctaccaa 611  Q
    |||| ||||||||||||||||||||| ||||||| || || |||||||||| || ||| ||| ||||||| ||||||| |||| | | ||||||||||||    
T  28266058 cactggaaaaatcgtggcacgatccaagaggaacatggcacgatgcaggagcaatgtggcaccatgcaggagataagatcaagtattgtactgctaccaa 28265959  T
Q  612 ctccatcgtggcacgatgagctcgaaacgtggcacg 647  Q
    |||||||||||||||||| |||| ||||||||||||    
T  28265958 ctccatcgtggcacgatgggctcaaaacgtggcacg 28265923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 413 - 562
Target Start/End: Original strand, 776847 - 776994
Alignment:
Q  413 tgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgcc 512  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||| ||| |||| |||| ||| |||||||||||||||||||||||||| | |||||    
T  776847 tgttgaaatgtgtctcaaaattgaagttgaagtttggaaaaatcgtggcacgtttgtagggaaac-tggcacgattgaatggttcagttttt-gattgcc 776944  T
Q  513 actagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcaggag 562  Q
    | |  |||||||||||||||| |||||||||||||| || ||||||||||    
T  776945 attgaaaaaatcgtggcacgacccaggaggaacgtggcacgatgcaggag 776994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 413 - 541
Target Start/End: Complemental strand, 50167737 - 50167608
Alignment:
Q  413 tgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcag-tttttgggttgc 511  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||| ||| ||||||||||||| || ||  |||||||| ||||| ||||||||||||    
T  50167737 tgttgaaatgtgtctcaaaattaatgttgaagtttggaaaaatcgtggcacgtttgcagggcaacgtgacataattgaatgattcagttttttgggttgc 50167638  T
Q  512 cactagaaaaatcgtggcacgatccaggag 541  Q
    |||| |||||||||||||||||| ||||||    
T  50167637 cactggaaaaatcgtggcacgatgcaggag 50167608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 413 - 541
Target Start/End: Complemental strand, 50169759 - 50169630
Alignment:
Q  413 tgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagt-ttttgggttgc 511  Q
    ||||||||||| ||| ||||||||||||||||||| ||| ||||||| ||| ||||||||||||| || ||||||||||||||||||| |||||||||||    
T  50169759 tgttgaaatgtctcttaaaattgatgttgaagtttagaaaaatcgtggcacgtttgcagggcaacgtgacacgattgaatggttcagttttttgggttgc 50169660  T
Q  512 cactagaaaaatcgtggcacgatccaggag 541  Q
    ||||  ||||||||||||||||| ||||||    
T  50169659 cactgtaaaaatcgtggcacgatgcaggag 50169630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 524 - 647
Target Start/End: Complemental strand, 45644834 - 45644711
Alignment:
Q  524 cgtggcacgatccaggaggaacgtgtcatgatgcaggaggaacgtgtcacgatgcaggggataagagcaagaaatatactgctaccaactccatcgtggc 623  Q
    ||||||||||||||||||||||||| |  |||||||||| |||||| ||||||||||| |||||||| ||| | | ||||||| ||||||||||||| ||    
T  45644834 cgtggcacgatccaggaggaacgtggctcgatgcaggagaaacgtggcacgatgcaggagataagagtaagtactgtactgctgccaactccatcgtagc 45644735  T
Q  624 acgatgagctcgaaacgtggcacg 647  Q
    |||||| |||||||||||||||||    
T  45644734 acgatgggctcgaaacgtggcacg 45644711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 412 - 576
Target Start/End: Complemental strand, 47256134 - 47255971
Alignment:
Q  412 ttgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgc 511  Q
    |||||||||  || ||||||||||||| |||||| ||||| ||||||| ||| ||||||| ||||| ||||||||||| |||||||||  |||| ||||     
T  47256134 ttgttgaaaattgactcaaaattgatggtgaagtctggaaaaatcgtggcacgtttgcagtgcaacgtggcacgattggatggttcag-gtttgagttgt 47256036  T
Q  512 cactagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcaggaggaacgtgtcacgat 576  Q
    |||| ||||||||||||||||||| |||||||  ||| || ||| ||||||||||||| ||||||    
T  47256035 cactggaaaaatcgtggcacgatctaggaggagtgtggcacgattcaggaggaacgtgacacgat 47255971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 471 - 576
Target Start/End: Original strand, 40816348 - 40816452
Alignment:
Q  471 gggcaacatggcacgattgaatggttcagtttttgggttgccactagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcaggaggaacgtgt 570  Q
    ||||||||||| ||||||| ||||||||| ||| || ||| || | |||||||||||||||||||||||||||||||| || |||||||||||||| ||     
T  40816348 gggcaacatggtacgattggatggttcaggttt-ggtttgtcattggaaaaatcgtggcacgatccaggaggaacgtggcacgatgcaggaggaacatga 40816446  T
Q  571 cacgat 576  Q
    ||||||    
T  40816447 cacgat 40816452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 566 - 647
Target Start/End: Complemental strand, 50167625 - 50167544
Alignment:
Q  566 cgtgtcacgatgcaggggataagagcaagaaatatactgctaccaactccatcgtggcacgatgagctcgaaacgtggcacg 647  Q
    |||| ||||||||||| |||||||  ||| | |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  50167625 cgtggcacgatgcaggagataagattaagtactatactgctaccaactccatcgtggcacgatgggctcgaaacgtggcacg 50167544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 413 - 488
Target Start/End: Complemental strand, 8871666 - 8871591
Alignment:
Q  413 tgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgatt 488  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||| ||| ||||||||||||| || |||||||    
T  8871666 tgttgaaatgtgtctcaaaattgatgttgaagtctggaaaaatcgtggcacgtttgcagggcaacgtgacacgatt 8871591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 413 - 487
Target Start/End: Complemental strand, 45644898 - 45644824
Alignment:
Q  413 tgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgat 487  Q
    |||||||||||||||||||||||| |||||||  ||||| ||||||| ||| ||||||||||||| |||||||||    
T  45644898 tgttgaaatgtgtctcaaaattgaagttgaagcctggaaaaatcgtggcacgtttgcagggcaacgtggcacgat 45644824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 461 - 581
Target Start/End: Original strand, 47703437 - 47703557
Alignment:
Q  461 cacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgccactagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcagg 560  Q
    ||||||||||||||||| ||||||||||| ||||||||  ||| || ||| | || ||||| |||| ||||||||||| ||||||||| || |||| | |    
T  47703437 cacatttgcagggcaacgtggcacgattggatggttcaaatttgggtttgtcgctggaaaattcgtagcacgatccagaaggaacgtggcacgatggaag 47703536  T
Q  561 aggaacgtgtcacgatgcagg 581  Q
    | ||| |||||||||| ||||    
T  47703537 atgaatgtgtcacgatccagg 47703557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 566 - 647
Target Start/End: Complemental strand, 50169647 - 50169566
Alignment:
Q  566 cgtgtcacgatgcaggggataagagcaagaaatatactgctaccaactccatcgtggcacgatgagctcgaaacgtggcacg 647  Q
    |||| ||||||||||| ||||||| |||| | | ||||||||| | |||||||||||||||||| |||| ||||||||||||    
T  50169647 cgtggcacgatgcaggagataagatcaagtattgtactgctacaacctccatcgtggcacgatgggctcaaaacgtggcacg 50169566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 583 - 641
Target Start/End: Original strand, 776994 - 777052
Alignment:
Q  583 gataagagcaagaaatatactgctaccaactccatcgtggcacgatgagctcgaaacgt 641  Q
    ||||||| |||| | | |||||||||||||||||||||||||||||| |||||||||||    
T  776994 gataagatcaagtattgtactgctaccaactccatcgtggcacgatgggctcgaaacgt 777052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 143
Target Start/End: Original strand, 1094525 - 1094639
Alignment:
Q  39 aacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctcaagtttgat----------gccaatttaggtggg 128  Q
    ||||||||||| |||||| | |||||||| ||  | | ||| ||| |||||||||||||||||||||| || |||          |||||||||||||||    
T  1094525 aacccacttgggttggtttgttggtattgacttggaacctgtgagtgtgctcctccacgaggtctcaaattcgattctctccggtgccaatttaggtggg 1094624  T
Q  129 ctaatttaacttctt 143  Q
    |||||||||||||||    
T  1094625 ctaatttaacttctt 1094639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 25297771 - 25297846
Alignment:
Q  38 aaacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctcaagtttgat 113  Q
    |||||||||||| |||||   ||||||||| || |||||||| ||| |||||||||| |||||||| | |||||||    
T  25297771 aaacccacttgggttggtctagtggtattgacttaggatctgagagtgtgctcctcctcgaggtctgaggtttgat 25297846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 40257398 - 40257469
Alignment:
Q  38 aaacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctcaagtt 109  Q
    |||||||||||| ||||   |||||||||||||   || ||||||| |||||||||| ||||||||||||||    
T  40257398 aaacccacttgggttggcctggtggtattggcttgagacctgggagtgtgctcctcctcgaggtctcaagtt 40257469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 113
Target Start/End: Original strand, 17439950 - 17439991
Alignment:
Q  72 aggatctgggagcgtgctcctccacgaggtctcaagtttgat 113  Q
    |||||||||||| |||||||||| |||||||||| |||||||    
T  17439950 aggatctgggagtgtgctcctcctcgaggtctcatgtttgat 17439991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 143
Target Start/End: Complemental strand, 21547475 - 21547442
Alignment:
Q  110 tgatgccaatttaggtgggctaatttaacttctt 143  Q
    |||||||||||||||||||||| |||||||||||    
T  21547475 tgatgccaatttaggtgggctagtttaacttctt 21547442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 412 - 448
Target Start/End: Complemental strand, 43342808 - 43342772
Alignment:
Q  412 ttgttgaaatgtgtctcaaaattgatgttgaagtttg 448  Q
    |||||||||| |||| |||||||||||||||||||||    
T  43342808 ttgttgaaatttgtcccaaaattgatgttgaagtttg 43342772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 132; Significance: 3e-68; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 413 - 647
Target Start/End: Complemental strand, 3039505 - 3039270
Alignment:
Q  413 tgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggtt-gc 511  Q
    |||||||||||||||||||||| |||||||||||||| | ||||||| ||| ||||||||||||| ||||||||||| ||||||||| ||||||||| |     
T  3039505 tgttgaaatgtgtctcaaaatttatgttgaagtttgggaaaatcgtggcacgtttgcagggcaacgtggcacgattggatggttcagattttgggtttgt 3039406  T
Q  512 cactagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcaggaggaacgtgtcacgatgcaggggataagagcaagaaatatactgctaccaa 611  Q
    | || ||||||||||||||  |||||||||||||||| || |||| |||||||||||| ||||||||||| |||||||||||| | | || |||||||||    
T  3039405 cgctggaaaaatcgtggcaaaatccaggaggaacgtggcacgatggaggaggaacgtggcacgatgcaggagataagagcaagtattgtattgctaccaa 3039306  T
Q  612 ctccatcgtggcacgatgagctcgaaacgtggcacg 647  Q
    |||||||||||||||||| || ||||||||||||||    
T  3039305 ctccatcgtggcacgatgggcacgaaacgtggcacg 3039270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 12 - 252
Target Start/End: Original strand, 13441023 - 13441271
Alignment:
Q  12 ataatactacaaaattggcttcactgaaacccacttggattggttcggtggtattggctgaggatctgggagcgtgctc-------ctccacgaggtctc 104  Q
    ||||||||||||||||||||||||||||| |||||||| |||||  |||||||||||||  ||| ||||||| ||||||       ||||||||||||||    
T  13441023 ataatactacaaaattggcttcactgaaatccacttgggttggtcgggtggtattggcttgggacctgggagtgtgctctgtgctcctccacgaggtctc 13441122  T
Q  105 aagtttgat----------gccaatttaggtgggctaatttaacttcttnnnnnnnnnnnnnnnggattggcttcagtgacctatacagtggaagggctg 194  Q
    ||||| |||          ||||||||| ||||||||||||||||||||                 |||||||||| ||||||||| | |||||||||||    
T  13441123 aagttcgattcttctcagtgccaatttaagtgggctaatttaacttcttaaaaaaaaaaaa-----attggcttcactgacctatataatggaagggctg 13441217  T
Q  195 catttggagatccctctataaggttttgaaaaataggtgagataaatatgtgtctgag 252  Q
    |||||||||||||||||    ||||||||||||||||||| |||||||| ||||||||    
T  13441218 catttggagatccctct----ggttttgaaaaataggtgatataaatatttgtctgag 13441271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 453 - 545
Target Start/End: Original strand, 21800913 - 21801005
Alignment:
Q  453 aatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgccactagaaaaatcgtggcacgatccaggaggaac 545  Q
    ||||||| ||| ||||||||||||| ||| ||||||| ||||||||| ||| || ||| |||| ||||||||||||||||||||| |||||||    
T  21800913 aatcgtggcacgtttgcagggcaacgtggtacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccaagaggaac 21801005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 38 - 112
Target Start/End: Complemental strand, 31623068 - 31622994
Alignment:
Q  38 aaacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctcaagtttga 112  Q
    |||||||||||| ||||| ||||||||||||||  ||| ||||||| |||||||||| |||||||||| ||||||    
T  31623068 aaacccacttgggttggtccggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggtttga 31622994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 33549103 - 33549170
Alignment:
Q  38 aaacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctca 105  Q
    |||||||||||| |||||  |||||||||||||  ||| ||||||| |||||||||| ||||||||||    
T  33549103 aaacccacttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctca 33549170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 412 - 445
Target Start/End: Original strand, 4045012 - 4045045
Alignment:
Q  412 ttgttgaaatgtgtctcaaaattgatgttgaagt 445  Q
    ||||||||||||||||||||||||||||||||||    
T  4045012 ttgttgaaatgtgtctcaaaattgatgttgaagt 4045045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 6776664 - 6776609
Alignment:
Q  58 ggtggtattggctgaggatctgggagcgtgctcctccacgaggtctcaagtttgat 113  Q
    |||||||||||||  ||||||||| | |||||||||| ||| ||||||||||||||    
T  6776664 ggtggtattggcttgggatctgggggtgtgctcctcctcgatgtctcaagtttgat 6776609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 113 - 143
Target Start/End: Complemental strand, 24641182 - 24641152
Alignment:
Q  113 tgccaatttaggtgggctaatttaacttctt 143  Q
    |||||||||||||||||||||||||||||||    
T  24641182 tgccaatttaggtgggctaatttaacttctt 24641152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 30127400 - 30127466
Alignment:
Q  39 aacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctca 105  Q
    ||||||||||| |||||  |||||||||||||  || |||||||| |||||||||  ||||||||||    
T  30127400 aacccacttgggttggtctggtggtattggcttggggtctgggagtgtgctcctcttcgaggtctca 30127466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 6758479 - 6758430
Alignment:
Q  58 ggtggtattggctgaggatctgggagcgtgctcctccacgaggtctcaag 107  Q
    ||||||||||||| ||||| |||||| ||||||| || ||||||||||||    
T  6758479 ggtggtattggcttaggatttgggagtgtgctccacctcgaggtctcaag 6758430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 4e-58; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 413 - 559
Target Start/End: Complemental strand, 9667037 - 9666891
Alignment:
Q  413 tgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgcc 512  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  9667037 tgttgaaatgtgtctcaaaattaatgttgaagtttggaacaatcgtggcacgtttgcagggcaacgtggcacgattgaagggttcagtttttgggttgcc 9666938  T
Q  513 actagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcag 559  Q
    ||| |||||||||||||||||||||||||||||||| || |||||||    
T  9666937 actggaaaaatcgtggcacgatccaggaggaacgtggcacgatgcag 9666891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 414 - 629
Target Start/End: Original strand, 31314120 - 31314330
Alignment:
Q  414 gttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgcca 513  Q
    ||||||||||||||||||||||||||||||||||| || ||||||| ||| ||||||||| ||   | ||||||     |||||||||||||||| ||||    
T  31314120 gttgaaatgtgtctcaaaattgatgttgaagtttgaaaaaatcgtggcacgtttgcagggtaatgcgacacgat-----ggttcagtttttgggtcgcca 31314214  T
Q  514 ctagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcaggaggaacgtgtcacgatgcaggggataagagcaagaaatatactgctaccaact 613  Q
    || ||||||||||||||||||||| |||||||||| || ||||||||||||||||| ||||||||||| ||||||| |||| | | ||||||||||||||    
T  31314215 ctggaaaaatcgtggcacgatccaagaggaacgtggcacgatgcaggaggaacgtggcacgatgcaggagataagatcaagtattgtactgctaccaact 31314314  T
Q  614 ccatcgtggcacgatg 629  Q
    ||||| ||||||||||    
T  31314315 ccatcatggcacgatg 31314330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 412 - 548
Target Start/End: Complemental strand, 29197002 - 29196866
Alignment:
Q  412 ttgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgc 511  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||| ||| ||||||||||||| |||||||||||||||||||| ||||||||||||    
T  29197002 ttgttgaaatgtgtctcaaaattgatgttgaagtttgggaaaatcgtggcacgtttgcagggcaacgtggcacgattgaatggttcaatttttgggttgc 29196903  T
Q  512 cactagaaaaatcgtggcacgatccaggaggaacgtg 548  Q
    |||| ||||||||||||||||||||||||||||||||    
T  29196902 cactggaaaaatcgtggcacgatccaggaggaacgtg 29196866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 413 - 562
Target Start/End: Original strand, 28073999 - 28074148
Alignment:
Q  413 tgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgcc 512  Q
    ||||||||  || |||||||||||||||||||||| ||| ||| ||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28073999 tgttgaaaattgactcaaaattgatgttgaagtttagaaaaattgtggcacgtttgcagggcaacgtggcacgattgaatggttcagtttttgggttgcc 28074098  T
Q  513 actagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcaggag 562  Q
    ||| |||||||||||||||||||||||||||||||| || ||||||||||    
T  28074099 actggaaaaatcgtggcacgatccaggaggaacgtggcacgatgcaggag 28074148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 413 - 560
Target Start/End: Complemental strand, 44701062 - 44700914
Alignment:
Q  413 tgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatc-gtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgc 511  Q
    ||||||||||||||||||||||||| ||||||| ||||| || | ||| ||| ||||||||||||| ||||||||||||||||||||||||||||||| |    
T  44701062 tgttgaaatgtgtctcaaaattgattttgaagtctggaaaaaaccgtggcacgtttgcagggcaacgtggcacgattgaatggttcagtttttgggttac 44700963  T
Q  512 cactagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcagg 560  Q
    |||| |||||||||||||||||||||||||||||||  || ||||||||    
T  44700962 cactggaaaaatcgtggcacgatccaggaggaacgtagcacgatgcagg 44700914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 453 - 577
Target Start/End: Complemental strand, 25796383 - 25796259
Alignment:
Q  453 aatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgccactagaaaaatcgtggcacgatccaggaggaacgtgtcat 552  Q
    ||||||| ||| ||||||||||||| ||||||||||| ||| ||||| |||||| ||| |||| ||||||||||| |||||||||||||||||||| ||     
T  25796383 aatcgtggcacgtttgcagggcaacgtggcacgattggatgattcaggttttggtttgtcactggaaaaatcgtgacacgatccaggaggaacgtggcac 25796284  T
Q  553 gatgcaggaggaacgtgtcacgatg 577  Q
    |||| | |||||| ||| |||||||    
T  25796283 gatggaagaggaatgtggcacgatg 25796259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 464 - 581
Target Start/End: Original strand, 3715495 - 3715612
Alignment:
Q  464 atttgcagggcaacatggcacgattgaatggttcagtttttgggttgccactagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcaggagg 563  Q
    |||||||||||||| |||||||||||  |||||||| |||  | ||| | || ||||||| |||||||||||||||||||||||| ||||||| | || |    
T  3715495 atttgcagggcaacgtggcacgattggttggttcagatttgtgtttgtcgctggaaaaattgtggcacgatccaggaggaacgtgacatgatggaagatg 3715594  T
Q  564 aacgtgtcacgatgcagg 581  Q
    |||||| |||||| ||||    
T  3715595 aacgtggcacgatccagg 3715612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 583 - 647
Target Start/End: Original strand, 28074148 - 28074212
Alignment:
Q  583 gataagagcaagaaatatactgctaccaactccatcgtggcacgatgagctcgaaacgtggcacg 647  Q
    ||||||| |||| | | |||||||||||||||||||||||||||||| |||||||||||||||||    
T  28074148 gataagatcaagtattgtactgctaccaactccatcgtggcacgatgggctcgaaacgtggcacg 28074212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 464 - 581
Target Start/End: Complemental strand, 47650162 - 47650045
Alignment:
Q  464 atttgcagggcaacatggcacgattgaatggttcagtttttgggttgccactagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcaggagg 563  Q
    |||||||||||||| |||||||||||  |||||||| ||| || ||| |  | |||||||  ||||||||||||||||||||||| ||  ||| | || |    
T  47650162 atttgcagggcaacgtggcacgattggttggttcagatttgggtttgtcgttggaaaaattatggcacgatccaggaggaacgtggcacaatggaagatg 47650063  T
Q  564 aacgtgtcacgatgcagg 581  Q
    |||||| |||||| ||||    
T  47650062 aacgtggcacgatccagg 47650045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 412 - 443
Target Start/End: Original strand, 5372821 - 5372852
Alignment:
Q  412 ttgttgaaatgtgtctcaaaattgatgttgaa 443  Q
    ||||||||||||||||||||||||||||||||    
T  5372821 ttgttgaaatgtgtctcaaaattgatgttgaa 5372852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 31520682 - 31520607
Alignment:
Q  38 aaacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctcaagtttgat 113  Q
    |||||||||||| ||||   ||||| |||||||  ||||||||||| |||||||||| |||||||| | |||||||    
T  31520682 aaacccacttgggttggcctggtggcattggcttgggatctgggagtgtgctcctcctcgaggtcttaggtttgat 31520607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 101
Target Start/End: Original strand, 36720380 - 36720443
Alignment:
Q  38 aaacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggt 101  Q
    |||||||||||| |||||  |||||||||||||  |||| |||||| |||||||||| ||||||    
T  36720380 aaacccacttgggttggtctggtggtattggcttgggatatgggagtgtgctcctcctcgaggt 36720443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 17108974 - 17108900
Alignment:
Q  39 aacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctcaagtttgat 113  Q
    ||||||||||| || ||| |||||||||| |||  ||| |||||| |||||||||| | |||||||| |||||||    
T  17108974 aacccacttgggttagtttggtggtattgactggagatgtgggagtgtgctcctcctcaaggtctcaggtttgat 17108900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 613 - 645
Target Start/End: Complemental strand, 44700881 - 44700849
Alignment:
Q  613 tccatcgtggcacgatgagctcgaaacgtggca 645  Q
    ||||||||||||||||| |||||||||||||||    
T  44700881 tccatcgtggcacgatgggctcgaaacgtggca 44700849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 46518626 - 46518702
Alignment:
Q  37 gaaacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctcaagtttgat 113  Q
    ||||||||||||| ||||    ||||||||||||  ||||||||||| |||||||||| | |||| ||| |||||||    
T  46518626 gaaacccacttgggttggcatagtggtattggcttgggatctgggagtgtgctcctcctcaaggtttcaggtttgat 46518702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 2e-57; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 413 - 562
Target Start/End: Complemental strand, 45687765 - 45687616
Alignment:
Q  413 tgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgcc 512  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  45687765 tgttgaaatgtgtctcaaaattgatgttgaagtttggaaaaatcgtggcacgtttgcagggcaacgtggtacgattgaatggttcagtttttgggttgcc 45687666  T
Q  513 actagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcaggag 562  Q
    ||| ||||| |||||||||||||||||||||||||| || ||||||||||    
T  45687665 actggaaaagtcgtggcacgatccaggaggaacgtgacacgatgcaggag 45687616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 412 - 548
Target Start/End: Complemental strand, 36463972 - 36463836
Alignment:
Q  412 ttgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgc 511  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||| || ||||||||||||||||||||||||||||||    
T  36463972 ttgttgaaatgtgtctcaaaattgatattgaagtttggaacaatcgtggcacgtttgcagggcaacgtgacacgattgaatggttcagtttttgggttgc 36463873  T
Q  512 cactagaaaaatcgtggcacgatccaggaggaacgtg 548  Q
    || |  ||||||||||||||||| |||||||||||||    
T  36463872 cattgaaaaaatcgtggcacgatgcaggaggaacgtg 36463836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 412 - 534
Target Start/End: Complemental strand, 52467904 - 52467782
Alignment:
Q  412 ttgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgc 511  Q
    |||||||||||||||||||||||||||||||||| |  |||||||||| ||| ||||||||||||| ||||||||||||||||||||| |||||||||||    
T  52467904 ttgttgaaatgtgtctcaaaattgatgttgaagtctaaaacaatcgtggcacgtttgcagggcaacgtggcacgattgaatggttcaggttttgggttgc 52467805  T
Q  512 cactagaaaaatcgtggcacgat 534  Q
    || |  |||||||| ||||||||    
T  52467804 cattgaaaaaatcgaggcacgat 52467782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 412 - 559
Target Start/End: Complemental strand, 46147910 - 46147779
Alignment:
Q  412 ttgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgc 511  Q
    |||||||||||||||||||||||||||||||||||||||| |||| || ||| |||                |||||||||||||||| ||| || |||     
T  46147910 ttgttgaaatgtgtctcaaaattgatgttgaagtttggaaaaatcatggcacgttt----------------cgattgaatggttcaggtttgggtttgt 46147827  T
Q  512 cactagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcag 559  Q
    |||| |||||||||||||||||||||||||||||||| || |||||||    
T  46147826 cactggaaaaatcgtggcacgatccaggaggaacgtggcacgatgcag 46147779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 557 - 646
Target Start/End: Complemental strand, 45687642 - 45687553
Alignment:
Q  557 caggaggaacgtgtcacgatgcaggggataagagcaagaaatatactgctaccaactccatcgtggcacgatgagctcgaaacgtggcac 646  Q
    ||||||||||||| ||||||||||| |||||||  ||| | | |||| |||||||||||||||||  |||||| ||||||||||||||||    
T  45687642 caggaggaacgtgacacgatgcaggagataagataaagtattgtactactaccaactccatcgtgctacgatgggctcgaaacgtggcac 45687553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 453 - 545
Target Start/End: Original strand, 3793593 - 3793686
Alignment:
Q  453 aatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgc-cactagaaaaatcgtggcacgatccaggaggaac 545  Q
    ||||||| ||| ||||||||| ||||||| ||||||| ||||||||| | |||||||   | || |||||||||||||||||||||||||||||    
T  3793593 aatcgtggcacgtttgcagggaaacatggtacgattggatggttcagatattgggtttttcgctggaaaaatcgtggcacgatccaggaggaac 3793686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 453 - 581
Target Start/End: Complemental strand, 24334656 - 24334528
Alignment:
Q  453 aatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgccactagaaaaatcgtggcacgatccaggaggaacgtgtcat 552  Q
    ||||||| ||| ||||||||||||| || |||||||| ||||||||| ||| |  ||| |  | ||||| | |||||||||||||| ||||||||| ||     
T  24334656 aatcgtggcacgtttgcagggcaacgtgtcacgattggatggttcagatttggatttgtcgttggaaaatttgtggcacgatccagaaggaacgtggcac 24334557  T
Q  553 gatgcaggaggaacgtgtcacgatgcagg 581  Q
    |||| | || ||||||| |||||| ||||    
T  24334556 gatggaagatgaacgtggcacgatccagg 24334528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 33619206 - 33619270
Alignment:
Q  39 aacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtct 103  Q
    ||||||||||| |||  | ||||||||||||| |||||||||||||||| ||||||  |||||||    
T  33619206 aacccacttgggttgccttggtggtattggcttaggatctgggagcgtggtcctccttgaggtct 33619270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 113 - 143
Target Start/End: Complemental strand, 23492021 - 23491991
Alignment:
Q  113 tgccaatttaggtgggctaatttaacttctt 143  Q
    |||||||||||||||||||||||||||||||    
T  23492021 tgccaatttaggtgggctaatttaacttctt 23491991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 113 - 143
Target Start/End: Complemental strand, 40283978 - 40283948
Alignment:
Q  113 tgccaatttaggtgggctaatttaacttctt 143  Q
    |||||||||||||||||||||||||||||||    
T  40283978 tgccaatttaggtgggctaatttaacttctt 40283948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 51250601 - 51250528
Alignment:
Q  36 tgaaacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctcaagtt 109  Q
    |||||||||||||| ||||   |||||||||||||  ||||||||||| ||||||| || | || |||||||||    
T  51250601 tgaaacccacttgggttggcctggtggtattggcttgggatctgggagtgtgctccgcctcaagatctcaagtt 51250528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 2e-51; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 415 - 577
Target Start/End: Complemental strand, 24526486 - 24526323
Alignment:
Q  415 ttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttggg-ttgcca 513  Q
    |||||||||||||||||||||| |||||||||||||| ||||||| ||| ||||||||||||| ||||||||||| ||||||||| ||||||| ||| ||    
T  24526486 ttgaaatgtgtctcaaaattgaagttgaagtttggaaaaatcgtggcacgtttgcagggcaacgtggcacgattggatggttcaggttttgggtttgtca 24526387  T
Q  514 ctagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcaggaggaacgtgtcacgatg 577  Q
    || |||||||||||||||||||||||||||||||| ||||||| | |||||||||| |||||||    
T  24526386 ctggaaaaatcgtggcacgatccaggaggaacgtggcatgatggaagaggaacgtggcacgatg 24526323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 412 - 534
Target Start/End: Complemental strand, 12098369 - 12098247
Alignment:
Q  412 ttgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgc 511  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||| || ||||||||||||||||||||||||| ||||    
T  12098369 ttgttgaaatgtgtctcaaaattgatgttgaagtttggaaaaatcgtggcacgtttgcagggcaacgtgacacgattgaatggttcagtttttggattgc 12098270  T
Q  512 cactagaaaaatcgtggcacgat 534  Q
    |||| ||||||||||||||||||    
T  12098269 cactggaaaaatcgtggcacgat 12098247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 413 - 541
Target Start/End: Original strand, 8152947 - 8153080
Alignment:
Q  413 tgttgaaatgtgtctcaaaattgat-----gttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttggg 507  Q
    |||||||||||||||||||||||||     |||||||||||||| | ||||| ||| ||||||||||||||||||| |||||||||||||| ||||||||    
T  8152947 tgttgaaatgtgtctcaaaattgatgtgatgttgaagtttggaaaactcgtggcacgtttgcagggcaacatggcaggattgaatggttcaatttttggg 8153046  T
Q  508 ttgccactagaaaaatcgtggcacgatccaggag 541  Q
    ||| |||| ||||||| |||||||||| ||||||    
T  8153047 ttgacactggaaaaattgtggcacgatgcaggag 8153080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 429 - 569
Target Start/End: Original strand, 22269351 - 22269490
Alignment:
Q  429 aaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgccactagaaaaatcgtgg 528  Q
    |||||||||| |||||| ||||| ||||||| ||| ||||||||||||| ||||||||||  ||||||||  ||| |||||| |||| ||||||||||||    
T  22269351 aaaattgatggtgaagtctggaaaaatcgtggcacgtttgcagggcaacgtggcacgatttgatggttcaagttt-gggttgtcactggaaaaatcgtgg 22269449  T
Q  529 cacgatccaggaggaacgtgtcatgatgcaggaggaacgtg 569  Q
    ||||||||||||||| | || || ||| |||||||||||||    
T  22269450 cacgatccaggaggagcatgacacgattcaggaggaacgtg 22269490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 413 - 562
Target Start/End: Complemental strand, 41318034 - 41317867
Alignment:
Q  413 tgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatg------------------g 494  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||| ||| |||| |||||||| |||||||||||||||                  |    
T  41318034 tgttgaaatgtgtctcaaaattgaagttgaagtttggaaaaatcgtggcacgtttgtagggcaacgtggcacgattgaatgacgtggcacgattgaattg 41317935  T
Q  495 ttcagtttttgggttgccactagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcaggag 562  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||  ||||| || ||||||||||    
T  41317934 ttcagtttttgggttgccactcgaaaaatcgtggcacgatgcaggagatacgtggcacgatgcaggag 41317867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 553 - 647
Target Start/End: Complemental strand, 41317897 - 41317803
Alignment:
Q  553 gatgcaggaggaacgtgtcacgatgcaggggataagagcaagaaatatactgctaccaactccatcgtggcacgatgagctcgaaacgtggcacg 647  Q
    ||||||||||  ||||| ||||||||||| |||||||||||| | | ||||||||||||||||||||||||| |||| |||||||||||||||||    
T  41317897 gatgcaggagatacgtggcacgatgcaggagataagagcaagtactgtactgctaccaactccatcgtggcaggatgggctcgaaacgtggcacg 41317803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 600 - 647
Target Start/End: Original strand, 8153095 - 8153142
Alignment:
Q  600 tactgctaccaactccatcgtggcacgatgagctcgaaacgtggcacg 647  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||    
T  8153095 tactgctaccaactccatcgtggcacgatgggctcgaaacgtggcacg 8153142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 557 - 647
Target Start/End: Complemental strand, 36146868 - 36146778
Alignment:
Q  557 caggaggaacgtgtcacgatgcaggggataagagcaagaaatatactgctaccaactccatcgtggcacgatgagctcgaaacgtggcacg 647  Q
    ||||||||||||| ||||||||||| ||||||| |||| | | |||||||||||||  ||| |||| ||||||  ||||||||||||||||    
T  36146868 caggaggaacgtgacacgatgcaggagataagatcaagtattgtactgctaccaacctcattgtggtacgatggactcgaaacgtggcacg 36146778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 464 - 548
Target Start/End: Complemental strand, 29160353 - 29160270
Alignment:
Q  464 atttgcagggcaacatggcacgattgaatggttcagtttttgggttgccactagaaaaatcgtggcacgatccaggaggaacgtg 548  Q
    |||||||||||||| |||||||||||  |||||||| ||| |  ||| |||| ||||||||  ||||||||||||||||||||||    
T  29160353 atttgcagggcaacgtggcacgattggttggttcaggtttggctttgtcact-gaaaaatcaaggcacgatccaggaggaacgtg 29160270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 48771938 - 48772004
Alignment:
Q  39 aacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctca 105  Q
    ||||||||||| |||| | |||||||||||||  ||||||||||| ||||||||||  |||||||||    
T  48771938 aacccacttgggttggcttggtggtattggcttgggatctgggagtgtgctcctccttgaggtctca 48772004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 37 - 109
Target Start/End: Original strand, 2446306 - 2446378
Alignment:
Q  37 gaaacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctcaagtt 109  Q
    ||||||||||||| |||||  | |||||||||||  |||  |||||| |||||||||| |||| |||||||||    
T  2446306 gaaacccacttgggttggtctgatggtattggcttgggacttgggagtgtgctcctcctcgagatctcaagtt 2446378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 2e-51; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 412 - 562
Target Start/End: Original strand, 36773146 - 36773297
Alignment:
Q  412 ttgttgaaatgtgtctcaaaattgatgtt-gaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttg 510  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||||| ||  ||||||||||||| ||||||||||||||||||||||||||||||||    
T  36773146 ttgttgaaatgtgtctcaaaattgatgtttgaagtttgaaaaaatcgtggcatgtttgcagggcaacgtggcacgattgaatggttcagtttttgggttg 36773245  T
Q  511 ccactagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcaggag 562  Q
    ||||| ||||||| |||||||||||||||||||||||| || ||||||||||    
T  36773246 ccactggaaaaattgtggcacgatccaggaggaacgtgacacgatgcaggag 36773297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 412 - 559
Target Start/End: Complemental strand, 33162999 - 33162852
Alignment:
Q  412 ttgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgc 511  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||| ||  |||| |||| ||| |||||||||||||||||||||||||||||||||    
T  33162999 ttgttgaaatgtgtctcaaaattgatgatgaagtttggaaaaatcgtggcatgtttgtagggaaacgtggcacgattgaatggttcagtttttgggttgc 33162900  T
Q  512 cactagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcag 559  Q
    |||| ||||||||||||||||||||||||||||| || || |||||||    
T  33162899 cactggaaaaatcgtggcacgatccaggaggaacatggcacgatgcag 33162852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 479 - 625
Target Start/End: Original strand, 11066957 - 11067103
Alignment:
Q  479 tggcacgattgaatggttcagtttttgggttgccactagaaaaatcgtggcacgatccaggaggaacgtgtcatgatgcaggaggaacgtgtcacgatgc 578  Q
    ||||||||||||| |||||||||||||||||||||||  |||||||||||||||||| ||||||||||||  | ||||||||||||||||| ||||||||    
T  11066957 tggcacgattgaagggttcagtttttgggttgccactgaaaaaatcgtggcacgatctaggaggaacgtgatacgatgcaggaggaacgtgacacgatgc 11067056  T
Q  579 aggggataagagcaagaaatatactgctaccaactccatcgtggcac 625  Q
    | | |||||||||||| | | ||||||||||||||||||||||||||    
T  11067057 atgagataagagcaagtactgtactgctaccaactccatcgtggcac 11067103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 453 - 581
Target Start/End: Complemental strand, 42269976 - 42269847
Alignment:
Q  453 aatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggtt-gccactagaaaaatcgtggcacgatccaggaggaacgtgtca 551  Q
    ||||||| ||| ||||||||||||| ||||||||||| ||||||||| ||||| ||| | | || |||||||||||||| ||||||||||||||||| ||    
T  42269976 aatcgtggcacgtttgcagggcaacgtggcacgattggatggttcaggttttgcgtttgtcgctggaaaaatcgtggcaggatccaggaggaacgtggca 42269877  T
Q  552 tgatgcaggaggaacgtgtcacgatgcagg 581  Q
    ||||| | |||||||||| |||||| ||||    
T  42269876 tgatggaagaggaacgtgacacgatccagg 42269847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 453 - 581
Target Start/End: Original strand, 34681825 - 34681953
Alignment:
Q  453 aatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgccactagaaaaatcgtggcacgatccaggaggaacgtgtcat 552  Q
    ||||||| ||| ||||||||||||| ||||||||||| ||||||||| ||| || ||| |||| |||||||||||||||||||||| ||||||||| ||     
T  34681825 aatcgtggcacgtttgcagggcaacgtggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccagtaggaacgtggcac 34681924  T
Q  553 gatgcaggaggaacgtgtcacgatgcagg 581  Q
    |||| | || ||||||| |||||| ||||    
T  34681925 gatggaagatgaacgtgacacgatccagg 34681953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 453 - 581
Target Start/End: Complemental strand, 31056650 - 31056521
Alignment:
Q  453 aatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttggg-ttgccactagaaaaatcgtggcacgatccaggaggaacgtgtca 551  Q
    ||||||| ||||||||||||||||| |||||| |||| ||||||||| ||||||| ||| |||| |||||||| ||||||||||||| |||||| || ||    
T  31056650 aatcgtggcacatttgcagggcaacgtggcacaattggatggttcagattttgggtttgtcactggaaaaatcatggcacgatccagaaggaacatggca 31056551  T
Q  552 tgatgcaggaggaacgtgtcacgatgcagg 581  Q
     |||| | |||||||||| |||||| ||||    
T  31056550 cgatggaagaggaacgtggcacgatccagg 31056521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 583 - 647
Target Start/End: Original strand, 36773297 - 36773361
Alignment:
Q  583 gataagagcaagaaatatactgctaccaactccatcgtggcacgatgagctcgaaacgtggcacg 647  Q
    ||||||| |||| | | |||||||||||||||||||||||||||||| |||||||||||||||||    
T  36773297 gataagatcaagtactttactgctaccaactccatcgtggcacgatgggctcgaaacgtggcacg 36773361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 26545840 - 26545914
Alignment:
Q  39 aacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctcaagtttgat 113  Q
    ||||||||||| |||||| ||||||||| |||  |||||||| || |||||||| | ||||||||||||||||||    
T  26545840 aacccacttgggttggtttggtggtattagcttgggatctggaagtgtgctccttctcgaggtctcaagtttgat 26545914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 451
Target Start/End: Original strand, 11066907 - 11066945
Alignment:
Q  413 tgttgaaatgtgtctcaaaattgatgttgaagtttggaa 451  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  11066907 tgttgaaatttgtctcaaaattgatgttgaagtttggaa 11066945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 143
Target Start/End: Original strand, 25637233 - 25637265
Alignment:
Q  111 gatgccaatttaggtgggctaatttaacttctt 143  Q
    |||||||||||||||||||||||||||||||||    
T  25637233 gatgccaatttaggtgggctaatttaacttctt 25637265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 19016031 - 19016105
Alignment:
Q  39 aacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctcaagtttgat 113  Q
    ||||||||||| |||||  | |||||||||||   ||  |||||| |||||||||| ||||||||||||||||||    
T  19016031 aacccacttgggttggtctgatggtattggcttgagacttgggagtgtgctcctcctcgaggtctcaagtttgat 19016105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 566 - 647
Target Start/End: Original strand, 26352264 - 26352345
Alignment:
Q  566 cgtgtcacgatgcaggggataagagcaagaaatatactgctaccaactccatcgtggcacgatgagctcgaaacgtggcacg 647  Q
    |||| ||||||||||| ||||||| |||| | | ||||| |||||||||||  ||||||||||| | | | |||||||||||    
T  26352264 cgtggcacgatgcaggagataagatcaagtattgtactgttaccaactccaatgtggcacgatgggttggcaacgtggcacg 26352345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 109
Target Start/End: Complemental strand, 37756046 - 37755977
Alignment:
Q  40 acccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctcaagtt 109  Q
    |||||||||| |||| | |||||||||||||  ||| ||||||  |||||||| | ||||||||||||||    
T  37756046 acccacttgggttggcttggtggtattggcttgggacctgggaatgtgctcctactcgaggtctcaagtt 37755977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 39714990 - 39715058
Alignment:
Q  37 gaaacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctca 105  Q
    ||||||||||||| ||||   |||||||||| ||  ||| ||||||| |||||||||| ||||||||||    
T  39714990 gaaacccacttgggttggcatggtggtattgacttgggacctgggagtgtgctcctcctcgaggtctca 39715058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 453 - 559
Target Start/End: Complemental strand, 10282315 - 10282208
Alignment:
Q  453 aatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttggg-ttgccactagaaaaatcgtggcacgatccaggaggaacgtgtca 551  Q
    ||||||| ||| ||||||||||||| ||||||||||| ||||||||| ||||||| ||| | || |||||||||||||||||||||||||||||||| ||    
T  10282315 aatcgtggcacgtttgcagggcaacgtggcacgattggatggttcaggttttgggtttgtcgctggaaaaatcgtggcacgatccaggaggaacgtggca 10282216  T
Q  552 tgatgcag 559  Q
     |||||||    
T  10282215 cgatgcag 10282208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 412 - 543
Target Start/End: Original strand, 28277694 - 28277824
Alignment:
Q  412 ttgttgaaatgtgtctcaaaattgatgttgaagtttggaacaatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttgggttgc 511  Q
    |||||||||  || ||||||||||||| |||||| | ||| ||||||| ||| ||||||||||||| ||||||||||| |||||| ||  |||||||||     
T  28277694 ttgttgaaaattgactcaaaattgatggtgaagtctagaaaaatcgtggcacgtttgcagggcaacgtggcacgattggatggtttag-gtttgggttgt 28277792  T
Q  512 cactagaaaaatcgtggcacgatccaggagga 543  Q
    || | ||||||| |||||||||||||||||||    
T  28277793 cattggaaaaattgtggcacgatccaggagga 28277824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 453 - 548
Target Start/End: Complemental strand, 3881337 - 3881241
Alignment:
Q  453 aatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttggg-ttgccactagaaaaatcgtggcacgatccaggaggaacgtg 548  Q
    ||||||| ||| ||||||||||||| ||||||||||| ||||||||| ||||||| ||  |  | ||||||||||||||||||||||||||||||||    
T  3881337 aatcgtggcacgtttgcagggcaacgtggcacgattggatggttcaggttttgggtttatcgttggaaaaatcgtggcacgatccaggaggaacgtg 3881241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 143
Target Start/End: Original strand, 16773807 - 16773921
Alignment:
Q  39 aacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctcaagtt----------tgatgccaatttaggtggg 128  Q
    ||||||||||  |||||  |||||||||| ||  ||| ||||||| |||||||||| |||||||||| |||          |||||||||||||||||||    
T  16773807 aacccacttgagttggtctggtggtattgacttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctctgatgccaatttaggtggg 16773906  T
Q  129 ctaatttaacttctt 143  Q
    |||||||| ||||||    
T  16773907 ctaatttagcttctt 16773921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 109
Target Start/End: Complemental strand, 30883275 - 30883204
Alignment:
Q  38 aaacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctcaagtt 109  Q
    |||||||||||| |||||   ||||||||||||  ||| ||||||| |||||||||| | ||||||||||||    
T  30883275 aaacccacttgggttggtctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaagtt 30883204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 8278351 - 8278277
Alignment:
Q  39 aacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctcaagtttgat 113  Q
    ||||||||||| |||||  | |||||||||||  |||  |||||| |||||||||| |||| |||||||||||||    
T  8278351 aacccacttgggttggtctgatggtattggcttgggacttgggagtgtgctcctcctcgagatctcaagtttgat 8278277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 14495881 - 14495815
Alignment:
Q  39 aacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctca 105  Q
    |||||| |||| |||||  |||||||||| ||  ||||||||||| |||||||||| ||||||||||    
T  14495881 aacccatttgggttggtctggtggtattgacttgggatctgggagtgtgctcctcctcgaggtctca 14495815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 453 - 581
Target Start/End: Original strand, 5447 - 5577
Alignment:
Q  453 aatcgtgacacatttgcagggcaacatggcacgattgaatggttcagtttttggg-ttgccactagaaaaat-cgtggcacgatccaggaggaacgtgtc 550  Q
    |||| |||||| ||||||||||||| ||||||||||  ||||||||| ||||||| ||| | || ||||||| ||||||||||| ||| | ||||||| |    
T  5447 aatcatgacacgtttgcagggcaacgtggcacgattagatggttcagattttgggtttgtcgctggaaaaatacgtggcacgatgcagaaagaacgtggc 5546  T
Q  551 atgatgcaggaggaacgtgtcacgatgcagg 581  Q
    | |||| | |||||||||| |||||| ||||    
T  5547 acgatggaagaggaacgtggcacgatccagg 5577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 607 - 647
Target Start/End: Original strand, 5625 - 5665
Alignment:
Q  607 accaactccatcgtggcacgatgagctcgaaacgtggcacg 647  Q
    ||||||||||||||||||||||| || || |||||||||||    
T  5625 accaactccatcgtggcacgatgggcacgtaacgtggcacg 5665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 39 - 143
Target Start/End: Complemental strand, 15399 - 15285
Alignment:
Q  39 aacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctcaagtt----------tgatgccaatttaggtggg 128  Q
    ||||||||||| |||||  |||||||||||||  ||| ||||||| |||||||||| |||||||||| |||           ||||||||||||||||||    
T  15399 aacccacttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctcggatgccaatttaggtggg 15300  T
Q  129 ctaatttaacttctt 143  Q
    |||||||| ||||||    
T  15299 ctaatttagcttctt 15285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 32847 - 32771
Alignment:
Q  37 gaaacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctcaagtttgat 113  Q
    ||||||||||||| ||||   |||||||||||||||||||||||| | | |||||||| | |||| | |||||||||    
T  32847 gaaacccacttgggttggcctggtggtattggctgaggatctgggggtgcgctcctcctcaaggttttaagtttgat 32771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 11547 - 11594
Alignment:
Q  58 ggtggtattggctgaggatctgggagcgtgctcctccacgaggtctca 105  Q
    |||||||||||||  ||||||||||| |||||||||| ||||||||||    
T  11547 ggtggtattggcttgggatctgggagtgtgctcctcctcgaggtctca 11594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 2546 - 2480
Alignment:
Q  39 aacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctca 105  Q
    |||||| |||| ||||| |||||||||||| |  ||||||||||| |||||||||| | ||||||||    
T  2546 aacccatttgggttggtccggtggtattggttttggatctgggagtgtgctcctcctcaaggtctca 2480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University