View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9173_low_5 (Length: 632)

Name: NF9173_low_5
Description: NF9173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9173_low_5
NF9173_low_5
[»] chr5 (34 HSPs)
chr5 (11-616)||(31331957-31332566)
chr5 (11-616)||(31380742-31381358)
chr5 (156-528)||(31368418-31368790)
chr5 (155-551)||(31317180-31317577)
chr5 (258-567)||(31284523-31284834)
chr5 (251-440)||(31279452-31279642)
chr5 (251-465)||(31281342-31281557)
chr5 (13-157)||(31317648-31317791)
chr5 (266-407)||(31643862-31644003)
chr5 (267-441)||(31378639-31378814)
chr5 (267-405)||(31475924-31476062)
chr5 (267-441)||(31329857-31330032)
chr5 (13-99)||(31330277-31330363)
chr5 (13-99)||(31379059-31379145)
chr5 (267-405)||(40843306-40843444)
chr5 (29-89)||(31285074-31285134)
chr5 (11-90)||(31368868-31368947)
chr5 (300-465)||(31288395-31288561)
chr5 (29-89)||(31281789-31281849)
chr5 (267-405)||(31407396-31407534)
chr5 (377-485)||(31313135-31313244)
chr5 (300-405)||(31494139-31494244)
chr5 (27-151)||(31407094-31407217)
chr5 (39-96)||(31288812-31288869)
chr5 (300-405)||(31416562-31416667)
chr5 (262-405)||(31395729-31395872)
chr5 (41-157)||(31643566-31643681)
chr5 (20-89)||(31505561-31505630)
chr5 (310-485)||(31362888-31363064)
chr5 (14-96)||(31279144-31279226)
chr5 (39-96)||(31475625-31475682)
chr5 (39-96)||(40843007-40843064)
chr5 (20-96)||(31363352-31363428)
chr5 (20-96)||(31313602-31313678)
[»] chr3 (1 HSPs)
chr3 (55-96)||(25708799-25708840)


Alignment Details
Target: chr5 (Bit Score: 480; Significance: 0; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 11 - 616
Target Start/End: Complemental strand, 31332566 - 31331957
Alignment:
Q  11 cagagaattataaggaaatagctaaaatctgctccaagaatgaataactgcaatttaatcttcatgagttgcacaattaggcatcctaggnnnnnnntaa 110  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||       |||    
T  31332566 cagagaattataaggaaatagctaaaacctgctccaagaatgaataactgcaatttaatcttcatgagttgcacaattaggcttcctaggaaaaaa-taa 31332468  T
Q  111 agaagatcgattttgattccgcactgagtttgccttgacaaactaagaaaaatgaatagattgaagtgagtgtcaataccaaaaatgccgc----gcttt 206  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     |||||    
T  31332467 agaagatcgatttcgaatccgcactgagtttgccttgacaaactaagaaaaatgaatagactgaagtgagtgtcaataccaaaaatgccgaatgagcttt 31332368  T
Q  207 aaatcagagacttctataatattgcaatttctttgcatataaattaaaatgaccaagcagatgatgaaactgaaagccctgtagagaaatattttcaaca 306  Q
    ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31332367 aaatcggagacttctattatgttgcaatttctttgcatataaattaaaatgaccaagcagatgatgaaactgaaagcactgtagagaaatattttcaaca 31332268  T
Q  307 aattccattctccaaagaggttgttgaatgaagagtttaaagcataacaaagcagtctaacaacagatgaagcaaagccaacaaatctccacacctttgg 406  Q
    ||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31332267 aattccattctccaaagaggtagttgaaggaagagcttaaagcataacaaagcagtccaacaacagatgaagcaaagccaacaaatctccacacctttgg 31332168  T
Q  407 caacatcatccatctccaatttggattagaatatgtgccatgttgtgtaaagtgtgtaatgatcaatttcaaagatggagtgggagaaagaccaaccatt 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31332167 caacatcatccatctccaatttggattagaatatgtgccatgttgtgtaaagtgtgtaatgatcaatttcaaagatggagtgggagagagaccaaccatt 31332068  T
Q  507 tttgacttcggctgcgagaagttgtcac-attccagctgaaatttcttggaagggactaaagcactggttatcacgtccgtgacgttaagttgggaatgt 605  Q
    ||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||    
T  31332067 ttttacttcggctgcgagaagttgtcactgttccagctgaaatttcttggaagggactaaagtactggttatcacgtccgtgacgttaaggcgggaatgt 31331968  T
Q  606 cacatcatatt 616  Q
    |||||||||||    
T  31331967 cacatcatatt 31331957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 11 - 616
Target Start/End: Complemental strand, 31381358 - 31380742
Alignment:
Q  11 cagagaattataaggaaatagctaaaatctgctccaag-------aatgaataactgcaatttaatcttcatgagttgcacaattaggcatcctaggnnn 103  Q
    ||||||||||||||||||| ||||||| ||||||||||       |||||||||||||||||||||||||||||||||||||||||||| |||||||       
T  31381358 cagagaattataaggaaatggctaaaacctgctccaagctccaagaatgaataactgcaatttaatcttcatgagttgcacaattaggcttcctaggaaa 31381259  T
Q  104 nnnntaaagaagatcgattttgattccgcactgagtttgccttgacaaactaagaaaaatgaatagattgaagtgagtgtcaataccaaaaatgccgc-- 201  Q
        |||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||       
T  31381258 aaa-taaagaagatcgatttcgaatccgcactgagttttccttgacaaactaagaaaaatgaatagactgaagtgagtgtcaataccaaaaatgccgaat 31381160  T
Q  202 --gctttaaatcagagacttctataatattgcaatttctttgcatataaattaaaatgaccaagcagatgatgaaactgaaagccctgtagagaaatatt 299  Q
      |||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  31381159 gagctttaaatcggagacttctataatgttgcaatttctttgaatataaattaaaatgaccaagcagatgatgaaactgaaagcactgtagagaaatatt 31381060  T
Q  300 ttcaacaaattccattctccaaagaggttgttgaatgaagagtttaaagcataacaaagcagtctaacaacagatgaagcaaagccaacaaatctccaca 399  Q
    ||||||||||||||||||||||||||||  ||||| |||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31381059 ttcaacaaattccattctccaaagaggtaattgaaggaagagctcaaagcataacaaagcagtccaacaacagatgaagcaaagccaacaaatctccaca 31380960  T
Q  400 cctttggcaacatcatccatctccaatttggattagaatatgtgccatgttgtgtaaagtgtgtaatgatcaatttcaaagatggagtgggagaaagacc 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31380959 cctttggcaacatcatccatctccaatttggattagaatatgtgccatgttgtgtaaagtgtgtaatgatcaatttcaaagatggagtgggagagagacc 31380860  T
Q  500 aaccatttttgacttcggctgcgagaagttgtcac-attccagctgaaatttcttggaagggactaaagcactggttatcacgtccgtgacgttaagttg 598  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  31380859 aaccatttttgacttcggctgcgagaagttgtcactattccagctgaaatttcttggaagggactaaagcactggttatcacgtccgtgacgttaaggcg 31380760  T
Q  599 ggaatgtcacatcatatt 616  Q
    ||||||||||||||||||    
T  31380759 ggaatgtcacatcatatt 31380742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 156 - 528
Target Start/End: Complemental strand, 31368790 - 31368418
Alignment:
Q  156 agaaaaatgaatagattgaagtgagtgtcaataccaaaaatgccgc----gctttaaatcagagacttctataatattgcaatttctttgcatataaatt 251  Q
    ||||||| ||||||||| |||||||||||||||||| ||||||||     ||||| |||| |||||||||| ||| ||||||||||| |||| |||||      
T  31368790 agaaaaaggaatagattaaagtgagtgtcaataccagaaatgccgaatgagctttgaatcggagacttctagaatgttgcaatttctgtgcaaataaa-- 31368693  T
Q  252 aaaatgaccaagcagatgatgaaactgaaagccctgtagagaaatattttcaacaaattccattctccaaagaggttgttgaatgaagagtttaaagcat 351  Q
       || |||||||||||||||||||||| ||| ||||| |||||||||||||||||||| |||||||||||||| | ||| || |||||| |||||||||    
T  31368692 ---atcaccaagcagatgatgaaactgacagcgctgtaaagaaatattttcaacaaatttcattctccaaagagatagttaaaggaagagcttaaagcat 31368596  T
Q  352 aacaaagcagtctaacaacagatgaagcaaagccaacaaatctccacacctttggcaacatcatccatctcca-atttggattagaatatgtgccatgtt 450  Q
    | ||||  |||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  31368595 agcaaacaagtccaacaagagatgaagcaaagcccacaaatctccacacctttggcaacatcatccatctccatgtttggattagaatatgtgccatgtt 31368496  T
Q  451 gtgtaaagtgtgtaatgatcaatttcaaagatggagtgggagaaagaccaaccatttttgacttcggctgcgagaagt 528  Q
    |||| |||||||||| ||| |||||||||||||||||| |||  |||||||||| ||||||||||| ||| |||||||    
T  31368495 gtgtcaagtgtgtaaggattaatttcaaagatggagtgagagtgagaccaaccaattttgacttcgtctgtgagaagt 31368418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 155 - 551
Target Start/End: Complemental strand, 31317577 - 31317180
Alignment:
Q  155 aagaaaaatgaatagattgaagtgagtgtcaataccaaaaatgccgc----gctttaaatcagagacttctataatattgcaatttctttgcatataaat 250  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||     ||||| ||||  ||||| ||| ||| |||||||||||||||| |||||     
T  31317577 aagaaaaaggaatagattgaagtgagtgtcaataccagaaatgccgaatgagctttgaatcgaagactgctagaatgttgcaatttctttgcaaataaa- 31317479  T
Q  251 taaaatgaccaagcagatgatgaaactgaaagccctgtagagaaatattttcaacaaattccattctccaaagaggttgttgaatgaagagtttaaagca 350  Q
        || |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| | ||| || |||||| |||| |||    
T  31317478 ----atcaccaagcagatgatgaaactgaaagcgctgtaaagaaatattttcaacaaattccattctccaaagagatagttaaaggaagagcttaatgca 31317383  T
Q  351 taacaaagcagtctaacaacagatgaagcaaagccaacaaatctccacacctttggcaacatcatccatctcca-atttggattagaatatgtgccatgt 449  Q
    || ||||  |||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||  ||||||    
T  31317382 tagcaaacaagtccaacaagagatgaagcaaagcccacaaatctccacacctttggcaacatcatccatctccatgtttggattagagtatgcaccatgt 31317283  T
Q  450 tgtgtaaagtgtgtaatgatcaatttcaaagatggagtgggagaaagaccaaccatttttgacttcggctgcgagaagttgtcac-attccagctgaaat 548  Q
    ||||| |||||||||| ||| |||||||||||| ||||| |||  ||||||||||||||||||||||  || |||||||| ||||  || ||||||||||    
T  31317282 tgtgtcaagtgtgtaaggattaatttcaaagatagagtgagagtgagaccaaccatttttgacttcgtgtgtgagaagttatcactctttcagctgaaat 31317183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 258 - 567
Target Start/End: Complemental strand, 31284834 - 31284523
Alignment:
Q  258 accaagcagatgatgaaactgaaagccctgtagagaaatattttcaacaaattccattctccaaagaggttgttgaatgaagagtttaaagcataacaaa 357  Q
    ||||||| ||||||||| ||||||   |||||||| | ||| |||| || |||||| ||||||||||| | |||||| |||||| ||| |||||||||||    
T  31284834 accaagctgatgatgaagctgaaaatgctgtagaggattatcttcagcagattccagtctccaaagagatagttgaaggaagagcttagagcataacaaa 31284735  T
Q  358 gcagtctaacaacagatgaagcaaagccaacaaatctccacacctttggcaacatcatccatctcca-atttggattagaatatgtgccatgttgtgtaa 456  Q
    |||||| || | |||||||||||||||| |||||||||||||| ||||||  |||||||||||||||  ||||||||||||||||||||||||||||| |    
T  31284734 gcagtccaatagcagatgaagcaaagcccacaaatctccacacttttggctgcatcatccatctccatgtttggattagaatatgtgccatgttgtgtca 31284635  T
Q  457 agtgtgtaatgatcaatttcaaagatggagtgggagaaagaccaaccatttttgacttcggctgcgagaagttgtcac-attccagctgaaatttcttgg 555  Q
    | ||||||| ||| ||||||||||||||||||  |   | ||||||||||||| |||||   || |||||||| | ||  || |||||||||||||  ||    
T  31284634 aatgtgtaaggattaatttcaaagatggagtgatactgaaaccaaccattttttacttcatgtgtgagaagttattactctttcagctgaaatttcgagg 31284535  T
Q  556 aagggactaaag 567  Q
    ||||||||||||    
T  31284534 aagggactaaag 31284523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 251 - 440
Target Start/End: Original strand, 31279452 - 31279642
Alignment:
Q  251 taaaatgaccaagcagatgatgaaactgaaagccctgtagagaaatattttcaacaaattccattctccaaagaggttgttgaatgaagagtttaaagca 350  Q
    ||||| ||||||||  |||||||| |||||| | | ||| || || || ||||| |||||||||||||||||||| | |||||| |||||| | | ||||    
T  31279452 taaaacgaccaagctaatgatgaagctgaaaacgccgtaaaggaaaatcttcaagaaattccattctccaaagagatagttgaaggaagagctgagagca 31279551  T
Q  351 taacaaagcagtctaacaacagatgaagcaaagccaacaaatctccacacctttggcaacatcatccatctcca-atttggattagaatat 440  Q
    ||||||| ||||| |||||||  |||||||||||| |||||||||||||| ||||||  ||||| ||||||||| ||||||||||||||||    
T  31279552 taacaaaccagtccaacaacaactgaagcaaagcctacaaatctccacacttttggctgcatcaaccatctccatatttggattagaatat 31279642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 251 - 465
Target Start/End: Complemental strand, 31281557 - 31281342
Alignment:
Q  251 taaaatgaccaagcagatgatgaaactgaaagccctgtagagaaatattttcaacaaattccattctccaaagaggttgttgaatgaagagtttaaagca 350  Q
    ||||| ||||||||  |||||||| |||||| | | ||| || || || |||||||||||||| ||||||||||| |  ||||| |||||| ||||||||    
T  31281557 taaaacgaccaagctaatgatgaagctgaaaacgccgtaaaggaaaatcttcaacaaattccaatctccaaagagataattgaaggaagagcttaaagca 31281458  T
Q  351 taacaaagcagtctaacaacagatgaagcaaagccaacaaatctccacacctttggcaacatcatccatctcca-atttggattagaatatgtgccatgt 449  Q
    |||||||| |||| || ||||| |||||||||||| ||||| || ||||| || ||   ||||| ||||||||| ||||||||||||||| ||| ||| |    
T  31281457 taacaaagaagtccaagaacagctgaagcaaagcctacaaacctgcacactttcgggtgcatcaaccatctccatatttggattagaatacgtgtcatat 31281358  T
Q  450 tgtgtaaagtgtgtaa 465  Q
    ||| | ||||||||||    
T  31281357 tgtctcaagtgtgtaa 31281342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 13 - 157
Target Start/End: Complemental strand, 31317791 - 31317648
Alignment:
Q  13 gagaattataaggaaatagctaaaatctgctccaagaatgaataactgcaatttaatcttcatgagttgcacaattaggcatcctaggnnnnnnntaaag 112  Q
    |||||| |||||| ||||||||||| | ||||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||| |||       |||||    
T  31317791 gagaatgataaggcaatagctaaaaccagctccaagaattaataactgcaacttaatcttcatgagttgaacaattagacatcccagg-aaaaaataaag 31317693  T
Q  113 aagatcgattttgattccgcactgagtttgccttgacaaactaag 157  Q
    |||||| ||||  | ||| ||||||||||||||||||||||||||    
T  31317692 aagatcaatttcaaatccccactgagtttgccttgacaaactaag 31317648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 266 - 407
Target Start/End: Original strand, 31643862 - 31644003
Alignment:
Q  266 gatgatgaaactgaaagccctgtagagaaatattttcaacaaattccattctccaaagaggttgttgaatgaagagtttaaagcataacaaagcagtcta 365  Q
    |||||||||||||||| | ||||| || || || ||||||| |||||| |||||||| || | |||||| |||||| | | |||||||||||| |||| |    
T  31643862 gatgatgaaactgaaaacgctgtaaaggaaaatcttcaacagattccaatctccaaatagatagttgaaggaagagctaagagcataacaaagtagtcca 31643961  T
Q  366 acaacagatgaagcaaagccaacaaatctccacacctttggc 407  Q
    |||| ||||||||||||||| ||||||||||| |||||||||    
T  31643962 acaatagatgaagcaaagcccacaaatctccatacctttggc 31644003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 267 - 441
Target Start/End: Complemental strand, 31378814 - 31378639
Alignment:
Q  267 atgatgaaactgaaagccctgtagagaaatattttcaacaaattccattctccaaagaggttgttgaatgaagagtttaaagcataacaaagcagtctaa 366  Q
    |||||||| |||||| |  | ||||||| ||| || ||||||||||| ||||||||||| | |||||| |||||  | | |||||  |||||||||| ||    
T  31378814 atgatgaagctgaaaacagtatagagaattatcttgaacaaattccaatctccaaagagatagttgaaggaagaactgagagcattgcaaagcagtccaa 31378715  T
Q  367 caacagatgaagcaaagccaacaaatctccacacctttggcaacatcatccatctcc-aatttggattagaatatg 441  Q
    |||||| || |||||| || | |||||||||||||||||||  |||||||||||||| |||||||| |||||||||    
T  31378714 caacagctgcagcaaatcccagaaatctccacacctttggctgcatcatccatctccaaatttggaatagaatatg 31378639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 267 - 405
Target Start/End: Original strand, 31475924 - 31476062
Alignment:
Q  267 atgatgaaactgaaagccctgtagagaaatattttcaacaaattccattctccaaagaggttgttgaatgaagagtttaaagcataacaaagcagtctaa 366  Q
    ||||||||||||||| |  |||| |||| ||| |||||||||||||| | |||||| || | ||| || |||||| ||| ||||||||||||||||| ||    
T  31475924 atgatgaaactgaaaacagtgtaaagaattatcttcaacaaattccagtttccaaatagatagttaaaggaagagcttagagcataacaaagcagtccaa 31476023  T
Q  367 caacagatgaagcaaagccaacaaatctccacacctttg 405  Q
    || ||| |||||||||||| ||||||||||| |||||||    
T  31476024 cagcagctgaagcaaagcccacaaatctccatacctttg 31476062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 267 - 441
Target Start/End: Complemental strand, 31330032 - 31329857
Alignment:
Q  267 atgatgaaactgaaagccctgtagagaaatattttcaacaaattccattctccaaagaggttgttgaatgaagagtttaaagcataacaaagcagtctaa 366  Q
    |||||||| |||||| |  |||| |||| ||| || ||||||||||| ||||||||||| | |||||| |||||  | | |||||  |||||||||| ||    
T  31330032 atgatgaagctgaaaacagtgtaaagaattatcttgaacaaattccaatctccaaagagatagttgaaggaagaactgagagcattgcaaagcagtccaa 31329933  T
Q  367 caacagatgaagcaaagccaacaaatctccacacctttggcaacatcatccatctcc-aatttggattagaatatg 441  Q
    |||||| || || ||| || | |||||||||||||||||||  |||||||||||||| |||||||| |||||||||    
T  31329932 caacagctgcagaaaatcccagaaatctccacacctttggctgcatcatccatctccaaatttggaatagaatatg 31329857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 31330363 - 31330277
Alignment:
Q  13 gagaattataaggaaatagctaaaatctgctccaagaatgaataactgcaatttaatcttcatgagttgcacaattaggcatcctag 99  Q
    |||||| ||||| |||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||  ||||| ||||||||    
T  31330363 gagaataataagaaaatagctaaaaactgctccaagaatgaataatttcaatttaatcttcatgagttgcatcattagacatcctag 31330277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 31379145 - 31379059
Alignment:
Q  13 gagaattataaggaaatagctaaaatctgctccaagaatgaataactgcaatttaatcttcatgagttgcacaattaggcatcctag 99  Q
    |||||| ||||| |||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||  ||||| ||||||||    
T  31379145 gagaataataagaaaatagctaaaaactgctccaagaatgaataatttcaatttaatcttcatgagttgcatcattagacatcctag 31379059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 267 - 405
Target Start/End: Original strand, 40843306 - 40843444
Alignment:
Q  267 atgatgaaactgaaagccctgtagagaaatattttcaacaaattccattctccaaagaggttgttgaatgaagagtttaaagcataacaaagcagtctaa 366  Q
    ||||||||||||||| |  |||| |||| ||| |||||||||||||| | |||||| || | |||||| |||||| ||| ||||||||||| ||||| ||    
T  40843306 atgatgaaactgaaaacagtgtaaagaattatcttcaacaaattccaatttccaaatagatagttgaaggaagagcttagagcataacaaaccagtccaa 40843405  T
Q  367 caacagatgaagcaaagccaacaaatctccacacctttg 405  Q
    || ||| ||||||||| || ||||||||||| |||||||    
T  40843406 cagcagctgaagcaaatcccacaaatctccatacctttg 40843444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 31285134 - 31285074
Alignment:
Q  29 tagctaaaatctgctccaagaatgaataactgcaatttaatcttcatgagttgcacaatta 89  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  31285134 tagctaaaacctgctccaacaatgaataactgcaatttaatcttcatgagttgcacaatta 31285074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 31368947 - 31368868
Alignment:
Q  11 cagagaattataaggaaatagctaaaatctgctccaagaatgaataactgcaatttaatcttcatgagttgcacaattag 90  Q
    |||||||| |||||| ||||||||||| | ||||||||||| ||||||||||| ||||||||||||||||| ||||||||    
T  31368947 cagagaatgataaggcaatagctaaaaccagctccaagaattaataactgcaacttaatcttcatgagttgaacaattag 31368868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 300 - 465
Target Start/End: Complemental strand, 31288561 - 31288395
Alignment:
Q  300 ttcaacaaattccattctccaaagaggttgttgaatgaagagtttaaagcataacaaagcagtctaacaacagatgaagcaaagccaacaaatctccaca 399  Q
    ||||||| |||||| |||||| |||| |  ||||| ||||||  || | ||||| | ||||||| |||||||| |||||||||||| |||||||||||||    
T  31288561 ttcaacagattccagtctccagagagataattgaaggaagagcatagaccataatagagcagtccaacaacagctgaagcaaagcctacaaatctccaca 31288462  T
Q  400 cctttggcaacatcatccatctcca-atttggattagaatatgtgccatgttgtgtaaagtgtgtaa 465  Q
    | ||||||  ||||| ||||||| | |||||||||||| |||| | ||| |||| | ||||||||||    
T  31288461 cttttggctgcatcaaccatctctatatttggattagagtatgcgtcatattgtctcaagtgtgtaa 31288395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 31281849 - 31281789
Alignment:
Q  29 tagctaaaatctgctccaagaatgaataactgcaatttaatcttcatgagttgcacaatta 89  Q
    ||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31281849 tagctaaaaccagctccaagaatgaataactgcaatttaaccttcatgagttgcacaatta 31281789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 267 - 405
Target Start/End: Original strand, 31407396 - 31407534
Alignment:
Q  267 atgatgaaactgaaagccctgtagagaaatattttcaacaaattccattctccaaagaggttgttgaatgaagagtttaaagcataacaaagcagtctaa 366  Q
    |||||||||||||||    |||| |||||||| |||||||||||||| | |||||| || | |||||| |||| | | | ||||||||| |||| || ||    
T  31407396 atgatgaaactgaaaagagtgtaaagaaatatcttcaacaaattccaatttccaaatagatggttgaaggaagtgctgagagcataacagagcaatccaa 31407495  T
Q  367 caacagatgaagcaaagccaacaaatctccacacctttg 405  Q
    || ||| |||||||||||| |||||||||||||| ||||    
T  31407496 cagcagctgaagcaaagcccacaaatctccacacttttg 31407534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 377 - 485
Target Start/End: Complemental strand, 31313244 - 31313135
Alignment:
Q  377 agcaaagccaacaaatctccacacctttggcaacatcatccatctcc-aatttggattagaatatgtgccatgttgtgtaaagtgtgtaatgatcaattt 475  Q
    |||||| || |||||||||||||||||||||| |||||| ||||||| |||||||| ||||||||||| ||| |||| | ||||| ||||  || |||||    
T  31313244 agcaaatcccacaaatctccacacctttggcagcatcatacatctccaaatttggaatagaatatgtgtcatattgtttgaagtgagtaagaattaattt 31313145  T
Q  476 caaagatgga 485  Q
    || |||||||    
T  31313144 cacagatgga 31313135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 300 - 405
Target Start/End: Original strand, 31494139 - 31494244
Alignment:
Q  300 ttcaacaaattccattctccaaagaggttgttgaatgaagagtttaaagcataacaaagcagtctaacaacagatgaagcaaagccaacaaatctccaca 399  Q
    |||||||||||||| | |||||| || | |||||| |||||| ||| |||||||||||||| || || ||||| |||| |||||| ||||||||||||||    
T  31494139 ttcaacaaattccaatttccaaatagatggttgaacgaagagcttagagcataacaaagcaatccaataacagctgaaacaaagctaacaaatctccaca 31494238  T
Q  400 cctttg 405  Q
    | ||||    
T  31494239 cttttg 31494244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 27 - 151
Target Start/End: Original strand, 31407094 - 31407217
Alignment:
Q  27 aatagctaaaatctgctccaagaatgaataactgcaatttaatcttcatgagttgcacaattaggcatcctaggnnnnnnntaaagaagatcgattttga 126  Q
    ||||||| ||| ||||||||| ||||| ||| |||| |||||||||||||||||||| |||||| ||||| |||       ||||||||||| | || ||    
T  31407094 aatagctgaaacctgctccaacaatgactaattgcagtttaatcttcatgagttgcataattagacatccaagg-aaaaagtaaagaagatccacttcga 31407192  T
Q  127 ttccgcactgagtttgccttgacaa 151  Q
    |||| ||||||| ||||||||||||    
T  31407193 ttccacactgagattgccttgacaa 31407217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 31288869 - 31288812
Alignment:
Q  39 ctgctccaagaatgaataactgcaatttaatcttcatgagttgcacaattaggcatcc 96  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| ||||| |||||    
T  31288869 ctgctccaaaaatgaataactgcaatttaatcttcaagagttgcaccattagacatcc 31288812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 300 - 405
Target Start/End: Original strand, 31416562 - 31416667
Alignment:
Q  300 ttcaacaaattccattctccaaagaggttgttgaatgaagagtttaaagcataacaaagcagtctaacaacagatgaagcaaagccaacaaatctccaca 399  Q
    |||||||||||||| | |||||| || | |||||| |||||| ||| ||||||||||| ||||| |||| |||  ||| ||||||| |||||||||||||    
T  31416562 ttcaacaaattccaatttccaaatagatggttgaaagaagagcttagagcataacaaatcagtccaacagcagcggaaacaaagcctacaaatctccaca 31416661  T
Q  400 cctttg 405  Q
    | ||||    
T  31416662 cttttg 31416667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 262 - 405
Target Start/End: Complemental strand, 31395872 - 31395729
Alignment:
Q  262 agcagatgatgaaactgaaagccctgtagagaaatattttcaacaaattccattctccaaagaggttgttgaatgaagagtttaaagcataacaaagcag 361  Q
    |||||||||||||||||||| |  |||| |||| ||| ||| ||||  |||| | |||||| || |  ||||| |||||| | | |||||||||||  ||    
T  31395872 agcagatgatgaaactgaaaactgtgtaaagaactatcttccacaatctccagtttccaaatagatgattgaaggaagagctgagagcataacaaacaag 31395773  T
Q  362 tctaacaacagatgaagcaaagccaacaaatctccacacctttg 405  Q
    || |||||||| ||||||| | |||||||||||||| |||||||    
T  31395772 tccaacaacagctgaagcacatccaacaaatctccatacctttg 31395729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 157
Target Start/End: Original strand, 31643566 - 31643681
Alignment:
Q  41 gctccaagaatgaataactgcaatttaatcttcatgagttgcacaattaggcatcctaggnnnnnnntaaagaagatcgattttgattccgcactgagtt 140  Q
    |||||||||||||||||  ||| |||||||||||||||||| |||||||| ||||| |||       ||||||||||||| ||  | |||||||| ||||    
T  31643566 gctccaagaatgaataagggcagtttaatcttcatgagttggacaattagacatccaagg-aaaaagtaaagaagatcgaattcaaatccgcactcagtt 31643664  T
Q  141 tgccttgacaaactaag 157  Q
    ||| | |||||||||||    
T  31643665 tgcgtcgacaaactaag 31643681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 31505561 - 31505630
Alignment:
Q  20 ataaggaaatagctaaaatctgctccaagaatgaataactgcaatttaatcttcatgagttgcacaatta 89  Q
    |||||| |||| || ||| | ||||||| ||||||||||||||||||||||||||| ||||| |||||||    
T  31505561 ataagggaataactgaaaccagctccaacaatgaataactgcaatttaatcttcattagttgtacaatta 31505630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 485
Target Start/End: Complemental strand, 31363064 - 31362888
Alignment:
Q  310 tccattctccaaagaggttgttgaatgaagagtttaaagcataacaaagcagtctaacaacagatgaagcaaagccaacaaatctccacacctttggcaa 409  Q
    ||||| |||||||||| | |||||| |||||  ||| |||||  || ||||||| | |||||   | |||||| || |||||||||||||||||||||      
T  31363064 tccatcctccaaagagatagttgaaggaagaacttagagcattgcagagcagtccagcaacaacagcagcaaatcccacaaatctccacacctttggctg 31362965  T
Q  410 catcatccatctcc-aatttggattagaatatgtgccatgttgtgtaaagtgtgtaatgatcaatttcaaagatgga 485  Q
    |||||| ||||||| |||||||| ||||| | ||| ||| |||| |  |||||||||  || ||||||| |||||||    
T  31362964 catcatacatctccaaatttggaatagaacacgtgacatattgtttgcagtgtgtaacaattaatttcacagatgga 31362888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 31279144 - 31279226
Alignment:
Q  14 agaattataaggaaatagctaaaatctgctccaagaatgaataactgcaatttaatcttcatgagttgcacaattaggcatcc 96  Q
    ||||| ||||| || ||||| ||| | |||||||||||||||||   || |||||||||||||||||| |||||||| |||||    
T  31279144 agaataataagcaagtagctgaaaccagctccaagaatgaataataacagtttaatcttcatgagttgtacaattagacatcc 31279226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 31475625 - 31475682
Alignment:
Q  39 ctgctccaagaatgaataactgcaatttaatcttcatgagttgcacaattaggcatcc 96  Q
    ||||||||| ||||||||||| |||||||||||||||||||  |||| |||| |||||    
T  31475625 ctgctccaataatgaataactccaatttaatcttcatgagtaacacagttagacatcc 31475682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 40843007 - 40843064
Alignment:
Q  39 ctgctccaagaatgaataactgcaatttaatcttcatgagttgcacaattaggcatcc 96  Q
    ||||||||| |||||||||||| ||||||||||||||||||  |||| |||| |||||    
T  40843007 ctgctccaataatgaataactggaatttaatcttcatgagtaacacagttagacatcc 40843064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 31363428 - 31363352
Alignment:
Q  20 ataaggaaatagctaaaatctgctccaagaatgaataactgcaatttaatcttcatgagttgcacaattaggcatcc 96  Q
    ||||| |||||||| ||| ||||||||| ||||||||| | |||| ||||||||||||| ||||  ||||| |||||    
T  31363428 ataagaaaatagctgaaaactgctccaaaaatgaataatttcaatgtaatcttcatgagctgcatcattagacatcc 31363352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 31313678 - 31313602
Alignment:
Q  20 ataaggaaatagctaaaatctgctccaagaatgaataactgcaatttaatcttcatgagttgcacaattaggcatcc 96  Q
    ||||| |||||||| |||  ||| |||| ||||||||| | |||| ||||||||||||||||||  ||||| |||||    
T  31313678 ataagaaaatagctgaaaattgccccaaaaatgaataatttcaatgtaatcttcatgagttgcatcattagacatcc 31313602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 25708840 - 25708799
Alignment:
Q  55 taactgcaatttaatcttcatgagttgcacaattaggcatcc 96  Q
    |||||||||||| | ||||||||||||||||||||| |||||    
T  25708840 taactgcaattttaccttcatgagttgcacaattagacatcc 25708799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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